mRNA_L-elsbetiae_contig576.14170.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig576.14170.1 vs. uniprot
Match: D7FZ90_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ90_ECTSI) HSP 1 Score: 329 bits (844), Expect = 3.540e-96 Identity = 269/439 (61.28%), Postives = 301/439 (68.56%), Query Frame = 1 Query: 64 DVVDLSTMDNGEKSGSDGSPS--ANVKPEKQGXXXXXXXXXXPNDDADARKRDQRARAAERXXXXXXXXXXXXEAQENKPTAADMATDKLPPLRVAINSPGMGWLQPVRKPSQGVVGASGGXXXXXXXXXXXSPAATXXXXXXXXXXXXXXXXXXXXXXAA-SPEARARIDRVTTAADALAAKVTSGVVAXXXXXXXXXXXXXXXAYMLQNVGGPWAHAAGVKNVPADGGGXXXXXXXXXXXXXXXXXFFGRNGGPMCPEAVRVLLASPDRSKILISNLLAERTREVESAKRKRDQLLGERKRLARDRSKAAQRHHAIFERRSQPVLPVDDALLGKLKPLGGGKVNKPLGGAGGTAAAAAAVERPLVLKKLSIAAGVSGSILRAWDFLHLNSQMITLTPFGLDDFADSLHYTKGASVMVAEVHTRLLSVILRDGKFPKS 1371 DVVDLST+DN +GSDGS + A+ +K+G DDA+A+KR+QRARA E XXXXXXX A++ D TDKLPPLRVAINSPGMGWLQPVR S A G XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXAA SP+++ARI+RV +AADA+AA+V+SG + XXXXXXXX + VGGPWAHAAGVKNV GG FF ++ PMCPEAV+ LLA P++SK +SNLL E REVESAKRKRDQ+ GERKRLARDRSKA QRH+AI ERR QPVLPVDDALLG LKP G + P PLVLKKLSIA V+G ILRAWDFLHLNSQ I LTPFGLDDFADSLHY GASVMVAEVHTRLLS+I R P S Sbjct: 262 DVVDLSTLDN-SSAGSDGSDADGASGTEKKKGGGGDTGKHKNGADDAEAKKREQRARANEXXXXXXXXVRAQALAKDTSTNNGDKTTDKLPPLRVAINSPGMGWLQPVRTSS-----AQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACSPKSKARIERVASAADAIAARVSSGAMGGXXXXXXXXAN----SNATHGVGGPWAHAAGVKNVAGGGG--------------TAAGFFAKSITPMCPEAVKALLADPEKSKTFLSNLLGESVREVESAKRKRDQVNGERKRLARDRSKAHQRHNAILERRKQPVLPVDDALLGNLKPPEEGTLAAP----------------PLVLKKLSIATNVAGPILRAWDFLHLNSQTIMLTPFGLDDFADSLHYGAGASVMVAEVHTRLLSLIFRSKLGPPS 660
BLAST of mRNA_L-elsbetiae_contig576.14170.1 vs. uniprot
Match: A0A6H5L6S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S8_9PHAE) HSP 1 Score: 170 bits (430), Expect = 2.330e-44 Identity = 167/276 (60.51%), Postives = 190/276 (68.84%), Query Frame = 1 Query: 190 DDADARKRDQRARAAERXXXXXXXXXXXXEAQENKPTAADMATDKLPPLRVAINSPGMGWLQPVRKPS-QGVVGASGGXXXXXXXXXXXSPAATXXXXXXXXXXXXXXXXXXXXXXAASPEARARIDRVTTAADALAAKVTSGVVAXXXXXXXXXXXXXXXAYMLQNVGGPWAHAAGVKNVPADGGGXXXXXXXXXXXXXXXXXFFGRNGGPMCPEAVRVLLASPDRSKILISNLLAERTREVESAKRKRDQLLGERKRLARDRSKAAQRHHAIFE 1014 DDA+A+KR+QRARA XXXXXX A++ D TDKLPPLRVAINSPGMGWLQPVR S QG XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXA SP+++ARI+RV +AADA+AA+V+SG + XXXXXXXX + VGGPWAHAAGVKNV GG FF R+ PMCPEAV+ LLA P++SK+ +SNLL E REVESAKRKRDQ+ GERKRLARDRSKA Q + E Sbjct: 125 DDAEAKKREQRARANXXXXXXXXEVRAQALAKDTATINGDETTDKLPPLRVAINSPGMGWLQPVRTSSAQGXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACSPKSKARIERVASAADAIAARVSSGAMGGXXXXXXXXAD----SNATHGVGGPWAHAAGVKNVAGGGG--------------TAAGFFSRSSTPMCPEAVKALLADPEKSKMFLSNLLGESVREVESAKRKRDQVKGERKRLARDRSKAQQARVRVKE 380 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig576.14170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig576.14170.1 >prot_L-elsbetiae_contig576.14170.1 ID=prot_L-elsbetiae_contig576.14170.1|Name=mRNA_L-elsbetiae_contig576.14170.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=506bp GNESWPLYTDSRPLRLMMSANDVVDLSTMDNGEKSGSDGSPSANVKPEKQback to top mRNA from alignment at L-elsbetiae_contig576:13378..22721+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig576.14170.1 ID=mRNA_L-elsbetiae_contig576.14170.1|Name=mRNA_L-elsbetiae_contig576.14170.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9344bp|location=Sequence derived from alignment at L-elsbetiae_contig576:13378..22721+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig576:13378..22721+ >mRNA_L-elsbetiae_contig576.14170.1 ID=mRNA_L-elsbetiae_contig576.14170.1|Name=mRNA_L-elsbetiae_contig576.14170.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3036bp|location=Sequence derived from alignment at L-elsbetiae_contig576:13378..22721+ (Laminarionema elsbetiae ELsaHSoW15)back to top |