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Homology
BLAST of mRNA_L-elsbetiae_contig5752.14156.1 vs. uniprot
Match: A0A7R9YY20_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YY20_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 3.170e-7 Identity = 29/64 (45.31%), Postives = 35/64 (54.69%), Query Frame = 1
Query: 58 MCPGGVPGIPSVRGEVCCPTSCLNCGGRGCGTFPGGQGNCCIGGRNGILANSDF-CSQTMAAPC 246
C G+ G+ S EVCC +SC CGG GC FPGG NCC G +A+SD CS+ C
Sbjct: 252 FCYNGIEGVSSSGVEVCCASSCGQCGGSGCWQFPGGSANCCTG----AIASSDIVCSEFTDVGC 311
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 321 |
| Cds size | 321 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816616.048671-CDS-L-elsbetiae_contig5752:3863..3925 | 1622816616.048671-CDS-L-elsbetiae_contig5752:3863..3925 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5752 3864..3925 - |
| 1691683686.975082-CDS-L-elsbetiae_contig5752:3863..3925 | 1691683686.975082-CDS-L-elsbetiae_contig5752:3863..3925 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5752 3864..3925 - |
| 1622816616.0612702-CDS-L-elsbetiae_contig5752:4467..4677 | 1622816616.0612702-CDS-L-elsbetiae_contig5752:4467..4677 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5752 4468..4677 - |
| 1691683686.9860196-CDS-L-elsbetiae_contig5752:4467..4677 | 1691683686.9860196-CDS-L-elsbetiae_contig5752:4467..4677 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5752 4468..4677 - |
| 1622816616.073291-CDS-L-elsbetiae_contig5752:4925..4974 | 1622816616.073291-CDS-L-elsbetiae_contig5752:4925..4974 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5752 4926..4974 - |
| 1691683686.9993339-CDS-L-elsbetiae_contig5752:4925..4974 | 1691683686.9993339-CDS-L-elsbetiae_contig5752:4925..4974 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5752 4926..4974 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5752.14156.1 >prot_L-elsbetiae_contig5752.14156.1 ID=prot_L-elsbetiae_contig5752.14156.1|Name=mRNA_L-elsbetiae_contig5752.14156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
ESATPDPTAATPPPVAGGEMCPGGVPGIPSVRGEVCCPTSCLNCGGRGCG
TFPGGQGNCCIGGRNGILANSDFCSQTMAAPCRIDDDPTPAPTVEVIPAP
ADEVAPA back to topmRNA from alignment at L-elsbetiae_contig5752:3864..4974- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5752.14156.1 ID=mRNA_L-elsbetiae_contig5752.14156.1|Name=mRNA_L-elsbetiae_contig5752.14156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1111bp|location=Sequence derived from alignment at L-elsbetiae_contig5752:3864..4974- (Laminarionema elsbetiae ELsaHSoW15)
GAATCGGCGACTCCTGACCCGACTGCGGCGACACCACCTCCGGTTGCAGG
TGGGTGAATCAATTGTGACGACGTTCAATTCACCACGCCTGGCCGCATCT
TTCATGATCGGCTTGACCTTGTACATACACATGCAAAACAATCTGCTGGC
ACGTATTTTTCAACCGGGCGTAGCGCAAGACACATCGAAGATGTGATGCG
CTCGCTTCGCTCTCGTGCATGAATCGATCGATGTGTGGAAAAAGCTTGGC
ATTCAGGCAACGATACACCATCTGTATACGCACACCTCTTGTTTCAGGCG
GCGAGATGTGCCCCGGAGGCGTTCCCGGCATCCCCTCCGTCCGCGGCGAG
GTTTGCTGCCCCACTTCGTGCCTAAACTGCGGAGGAAGGGGCTGCGGTAC
CTTCCCCGGTGGTCAGGGCAACTGTTGCATCGGCGGGAGGAATGGAATCC
TGGCCAACTCAGACTTCTGCAGCCAGACGATGGCTGCCCCGTGCAGAATC
GACGACGGTGAGATGTTTCCTAGAGCAGCAATACACATGCGAGTCATCGC
GCCAGAGTTTGGGCGTTTGTTTTTAGTGAAGCAATGCAGTTATATTCACA
CCAAGGGGTTTGTGTCGACGAACGTGCAGAACCCTCATGGAACACTCCGT
TGACGGACTGAACAGCAAACATTGAAAAGTCGTTCTGTGCCTAACCTCCC
CAGAACCGGCGACACCCGTTCCCGCTGACGGACCGACCCCCGCCCCGGTT
GCAGTTGCGCCAATCAGTTGTCATGGCGCGAACTTATCACCTCTGGCTTC
GTCTTTGATGTTCTTGATTGTTCGTTTTGAAGAGGTGGGTGGCCAGCTCT
CGCGCACGCTTCATGTAGTCTAGACCCCAAGGCATCTCGCACGCTTCAGA
GCAATGCATAGAAGCGTTACTCTCCGCGTTGGGGTACATTCTGGAAGCGC
TTGCGGCCCCCTCGAGTTTTTCGTTTCGTTTTCCTTCAGCGATCCACGTG
TCCCAACTAAAAACGGGGATGCCCCTGCCTTCCTTGCTCCCCTCCACAGA
TCCCACCCCGGCTCCCACCGTTGAGGTCATCCCGGCTCCCGCCGACGAGG
TGGCCCCAGCC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5752:3864..4974- >mRNA_L-elsbetiae_contig5752.14156.1 ID=mRNA_L-elsbetiae_contig5752.14156.1|Name=mRNA_L-elsbetiae_contig5752.14156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig5752:3864..4974- (Laminarionema elsbetiae ELsaHSoW15)
GAATCGGCGACTCCTGACCCGACTGCGGCGACACCACCTCCGGTTGCAGG
AATCGGCGACTCCTGACCCGACTGCGGCGACACCACCTCCGGTTGCAGGC
GGCGAGATGTGCCCCGGAGGCGTTCCCGGCATCCCCTCCGTCCGCGGCGA
GGTTTGCTGCCCCACTTCGTGCCTAAACTGCGGAGGAAGGGGCTGCGGTA
CCTTCCCCGGTGGTCAGGGCAACTGTTGCATCGGCGGGAGGAATGGAATC
CTGGCCAACTCAGACTTCTGCAGCCAGACGATGGCTGCCCCGTGCAGAAT
CGACGACGGCGGCGAGATGTGCCCCGGAGGCGTTCCCGGCATCCCCTCCG
TCCGCGGCGAGGTTTGCTGCCCCACTTCGTGCCTAAACTGCGGAGGAAGG
GGCTGCGGTACCTTCCCCGGTGGTCAGGGCAACTGTTGCATCGGCGGGAG
GAATGGAATCCTGGCCAACTCAGACTTCTGCAGCCAGACGATGGCTGCCC
CGTGCAGAATCGACGACGATCCCACCCCGGCTCCCACCGTTGAGGTCATC
CCGGCTCCCGCCGACGAGGTGGCCCCAGCCATCCCACCCCGGCTCCCACC
GTTGAGGTCATCCCGGCTCCCGCCGACGAGGTGGCCCCAGCC back to top
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