mRNA_L-elsbetiae_contig575.14148.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig575.14148.1 vs. uniprot
Match: A0A6H5JT44_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT44_9PHAE) HSP 1 Score: 1113 bits (2880), Expect = 0.000e+0 Identity = 754/1038 (72.64%), Postives = 824/1038 (79.38%), Query Frame = 3 Query: 309 RRRTRSDEMEKVTAQRMQTLKRLLPGLEAGQLVSRAPALLGSTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLYHEDTLAPRIEFIKRLFPETPKLLSRAPVLLTHDPETFLLPKIKQLESLLPGVDVLKVVRTEPTILYLDIGGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKIETTVAAKFQQLQELFPDANVVSMVESDATVLLYDYTSVSIKVDCWRERVSNVTELNQLIQDYPLLLSYSLDTSVSRLDFLIESNGAKFSAPHLRKMVRMAKRDWMALHGDKYRRFLERKVEGPSSMRLWPGLYFDSDTKDTKGGAGGKKLLQGEGMSAKFQDDGSVEVSSAAELKATNAYIKSLEKQYGKTIKETQLRFSPALRRGKYGDNPSEVDMILYDIKSFDQQVRKFATGYRVKRFKELLPGLETKTLFTDYPKVLMMDLKKASHLAPCSVSYCTQVEEKVEELRELLPGECVARVVSSAPDLLLNDVQTCLRPRMTRLVAALTTVKQFEGIIDADKVRAXXXXXXXXXXXXXXNVVVPSLQYMLQSTSDHDELGKRLFRDPSLLVVGVGPLARLQYTLEQHRNGTASIATGYLGAAV--VSTSTAAYFDNPWVGAGSSGSPKAEAGAEDMPGRKTRKRKGGKNTSMSLSAVDLSLSLEEDQTRLLPPVIVPQQVLKCQLRDFVARNPEYISFLAQRQGLDASSIFHNANTNVEGDGQLEENGYQSQVVFWERAVGGRLSEMFRPVDSPYAREKMREAAGNG-----QKGPSLSELDMLIGDVLYFNHRMGVLASKIQKKMPPAVDIGEEASKLAEDVQWGSRQIRRLLGLGSWTEQVEVADTDASCESKSGSAAGGDAPQHQDKEDVCEPRLALPQQKQRGKKRQWVSDTFQSMLGSVGGG--GDNDSVEAVGTVEAAVKAKQGGDRETAQELERLLGEVSSYEGRLDNLLDLSSPIRIS-DDDSIPTDAGVDENDNSR*LPGGISHYTLDGEAG 3392 +RRTRSD+M++VTAQRMQTLKRLLPGLEAGQLVSRAPALLGSTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LLYHEDTLAPRIEF+KRLFPE+P+LLSRAP+LLTHDPETFL+PKI QLESLLPG+DVLKVVRTEPTILYLDIGGL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TTVAAKFQQLQ+LFPDANVVSMVESDATVLLYDYTSV +KVDCWRERVSN TELNQLIQDYPLLLSYSLDTSVSRLDFLIE+ G K +R VRMAKRDW+A+HG KYR+FLERKVEGPS +RLWPGLYFDSDT G G +LL+GEGMSAK QDDGSVEVSSAAE+K +AYIK+LE++YGK IKETQLRF+PA+RRGK GDNPSEVDMILYDIKSFDQQVRK ATGYR+KRFKELLPGL+T+TLFT+YP VL+MDLKK VE+KVEELRELLPGE VA VVS APDLLLNDVQTCLRPRMTRLVAALTTVKQF+G XXXXXXXXXXXXXX VPSLQYMLQSTSDHDEL RLFRDPSLLVVGVGPLARLQYTLEQHRNG+ASIA G LGA V + TA++ PWVGAGS KA G G + +R K+ + S + L EDQ+RLLPPVIVPQ +LKCQ+RDF+ RNPEY+SFLAQRQGLD SS+ H + EGD Q V FWERAVG RLSEMFRPVDSPYARE MREA NG QK P LSELDMLIGDVL+FN RM VLASKIQKKMP VD+GEEA KLAEDV+WGSRQI+RLLGLGSWTEQ ++ S DA ++ VC P PQ K+RGKKR+WVSDTFQS++GSVGG G D+++ VE +VK GG+RETAQELERLLGEVSS EGRLDNLLDLSS I + DD S P + G GG+S T G Sbjct: 52 KRRTRSDDMDEVTAQRMQTLKRLLPGLEAGQLVSRAPALLGSTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLYHEDTLAPRIEFMKRLFPESPRLLSRAPLLLTHDPETFLMPKIHQLESLLPGIDVLKVVRTEPTILYLDIGGLVKRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTVAAKFQQLQDLFPDANVVSMVESDATVLLYDYTSVGVKVDCWRERVSNATELNQLIQDYPLLLSYSLDTSVSRLDFLIETTGVKPRPATMRTTVRMAKRDWLAVHGVKYRKFLERKVEGPSVLRLWPGLYFDSDTGSGNGSGG--RLLKGEGMSAKLQDDGSVEVSSAAEMKEASAYIKALERKYGKIIKETQLRFTPAVRRGKLGDNPSEVDMILYDIKSFDQQVRKLATGYRLKRFKELLPGLDTETLFTEYPNVLLMDLKK--------------VEDKVEELRELLPGERVAGVVSVAPDLLLNDVQTCLRPRMTRLVAALTTVKQFQGXXXXXXXXXXXXXXXXXXXXXXXXXXVPSLQYMLQSTSDHDELATRLFRDPSLLVVGVGPLARLQYTLEQHRNGSASIALGNLGAYVGPEAALTASHHPTPWVGAGSG---KAATG-----GTFSLRRPSTKDDASS------DVHLGEDQSRLLPPVIVPQ-ILKCQMRDFITRNPEYVSFLAQRQGLDVSSMSH----SPEGDDQ--------SVAFWERAVGRRLSEMFRPVDSPYARE-MREARANGKGPDGQKAPPLSELDMLIGDVLHFNDRMTVLASKIQKKMPQTVDVGEEAKKLAEDVKWGSRQIKRLLGLGSWTEQNVATPHSEVQVAEIPSQNANDASKN-----VCNPMSTFPQGKRRGKKRRWVSDTFQSLMGSVGGSAAGGADAIKVATAVEVSVK--DGGNRETAQELERLLGEVSSNEGRLDNLLDLSSSIPDNTDDSSSPAEDG-----------GGVSGTTSTATDG 1027 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig575.14148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig575.14148.1 >prot_L-elsbetiae_contig575.14148.1 ID=prot_L-elsbetiae_contig575.14148.1|Name=mRNA_L-elsbetiae_contig575.14148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1072bp MHRSKGASLLGAALCVLSLRLGSCFTTSSAGASRQTATALRSASVANKDKback to top mRNA from alignment at L-elsbetiae_contig575:8842..23143+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig575.14148.1 ID=mRNA_L-elsbetiae_contig575.14148.1|Name=mRNA_L-elsbetiae_contig575.14148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=14302bp|location=Sequence derived from alignment at L-elsbetiae_contig575:8842..23143+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig575:8842..23143+ >mRNA_L-elsbetiae_contig575.14148.1 ID=mRNA_L-elsbetiae_contig575.14148.1|Name=mRNA_L-elsbetiae_contig575.14148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6432bp|location=Sequence derived from alignment at L-elsbetiae_contig575:8842..23143+ (Laminarionema elsbetiae ELsaHSoW15)back to top |