mRNA_L-elsbetiae_contig5747.14145.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5747.14145.1
Unique NamemRNA_L-elsbetiae_contig5747.14145.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5747.14145.1 vs. uniprot
Match: D7G0Q5_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Q5_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 3.020e-49
Identity = 84/115 (73.04%), Postives = 96/115 (83.48%), Query Frame = 1
Query:  166 QNSSIRNIDLSNNSLGRIGVGCVMALPAEVGDRIEIRLDHCNFMVGCESCWFDDDQLWPSYDLRMDQPYDRAVAFHLIRRAARDEGLKLKRVGHIMAGESEKQINLVVGSGQSRR 510
            QNS  R+IDLSNN LG++GVGCVM LPAEVGDRI   L  CNFMV CE CWFDD+Q+ PSY LRMD+PYDRAVAFHL+RRAARDEGLKLK V H MAGE+EK+I+LV G+G + R
Sbjct:  754 QNSVTRDIDLSNNPLGKVGVGCVMELPAEVGDRINTELASCNFMVDCEECWFDDEQIRPSYHLRMDEPYDRAVAFHLVRRAARDEGLKLKMVAHTMAGEAEKEIHLVTGTGMTSR 868          
BLAST of mRNA_L-elsbetiae_contig5747.14145.1 vs. uniprot
Match: A0A482ST86_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ST86_9ARCH)

HSP 1 Score: 105 bits (263), Expect = 2.620e-23
Identity = 51/163 (31.29%), Postives = 91/163 (55.83%), Query Frame = 1
Query:   19 LDLSFNCFGEKGGEALGASLNVNTSLETLGLASNAINPRACFVICQGLMQNSSIRNIDLSNNSLGRIGVGCVMALPAEVGDRIEIRLDHCNFMVGCESCWFDDDQLWPSYDLRMDQPYDRAVAFHLIRRAARDEGLKLKRVGHIMAGESEKQINLVVGSGQSR 507
            LDL+ N  G + GE LG ++  N +L TL ++ N +   AC  IC G++QN ++  ++++ N +G +GV  +M +   +G R+ ++  +CN +V    CW++      SY L++D+P+DRAVAFHL+   A       +   + +   + + + LV G  + R
Sbjct:  536 LDLNNNGLGYQAGELLGDAIMENRTLRTLLVSGNNLTTTACICICIGIVQNFALNRVEMNENPIGEVGVRMIMQVSMSLGSRVSLQAKNCNTIVTDGRCWYNPSNPCRSYSLKLDRPFDRAVAFHLLHIVATHNSYIFQTSTYELEKGNPQPLKLVQGIAKDR 698          
BLAST of mRNA_L-elsbetiae_contig5747.14145.1 vs. uniprot
Match: A0A7S3H921_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H921_9STRA)

HSP 1 Score: 102 bits (253), Expect = 5.710e-22
Identity = 54/166 (32.53%), Postives = 88/166 (53.01%), Query Frame = 1
Query:   10 LKELDLSFNCFGEKGGEALGASLNVNTSLETLGLASNAINPRACFVICQGLMQNSSIRNIDLSNNSLGRIGVGCVMALPAEVGDRIEIRLDHCNFMVGCESCWFDDDQLWPSYDLRMDQPYDRAVAFHLIRRAARDEGLKLKRVGHIMAGESEKQINLVVGSGQSR 507
            L  LDLS N  G   GEALG ++  N +L+TL +A N     AC  +C G+++N +++ ++L +N +G  G   +M     VG R+ +   +CN     E+CW+D  Q    Y+L++D P+ RAVAFHL++  A    L    + +        +++LV    + R
Sbjct:  770 LTHLDLSCNGMGSAAGEALGDAIMENRTLKTLLVAGNNFTSTACLSMCVGVVENLAMKYLNLDDNPIGEAGAKMIMQSSIVVGSRVNLSAANCNTNQQDENCWYDPGQPCRDYELQLDHPFHRAVAFHLMQIVATHSTLIFSEMTYEPPNGKPAKLSLVQSVSKDR 935          
BLAST of mRNA_L-elsbetiae_contig5747.14145.1 vs. uniprot
Match: A0A7S4D9J0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9J0_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 1.800e-14
Identity = 45/140 (32.14%), Postives = 77/140 (55.00%), Query Frame = 1
Query:   40 FGEKGGEALGASLNVNTSLETLGLASNAINPRACFVICQGLMQNSSIRNIDLSNNSLGRIGVGCVMALPAEVGDRIEIRLDHCNFMV-GCESCWFDDDQLWPSYDLR---------MDQPYDRAVAFHLIRRAARDEGLK 429
            FG++GG A+G +L  N SL +L LA+N+++PRA F+I   L  NS+I  I L  N +G++G   +M+LPA +   +++ L  C   + G   CW++ +   P+   R         +   Y+ AV + ++    ++ GLK
Sbjct:    1 FGKEGGAAIGRALFDNKSLRSLNLANNSLDPRAAFIIAVALRYNSTIEEIILDGNPVGKVGGYSLMSLPATLERPLKLGLQGCTLSLPGGPRCWYNPED--PAERARGAGGLLALDLADEYNYAVLYEILWAMVKEPGLK 138          
BLAST of mRNA_L-elsbetiae_contig5747.14145.1 vs. uniprot
Match: A0A7S0K1S5_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K1S5_CAFRO)

HSP 1 Score: 61.2 bits (147), Expect = 1.150e-8
Identity = 47/146 (32.19%), Postives = 70/146 (47.95%), Query Frame = 1
Query:   61 ALGASLNVNTSLETLGLASNAINPRACFVICQGLMQNSSIRNIDLSNNSLGRIGVGCVMALPAEVGDRIEIRLDHCNFMVGCESCWFDDDQLWPSYD-----LRMDQPYDRAVAFHLIRRAARDEGLKLKRVGHIMAGESEKQINL 483
            A+ A++  N +LE L LA N+I P A  V+   L  NS++  ID+S N+LG++G    +    E    +EI L   N  V      F D    PS       L +  PY  AVAF L+R    ++ ++L+ V   +   + K I L
Sbjct:    3 AMAAAVADNVTLEDLNLAHNSIMPNAALVLATCLATNSTLVRIDVSGNTLGKLGGRAFIRTGIE-SRHMEIGLAQTNLEVDD----FSDSAFHPSRPSGTRTLDLSDPYSHAVAFELLRIFRDNQAVQLEPVALAVPHSASKTITL 143          
BLAST of mRNA_L-elsbetiae_contig5747.14145.1 vs. uniprot
Match: UPI0011B4B49A (NACHT, LRR and PYD domains-containing protein 12-like n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B4B49A)

HSP 1 Score: 55.8 bits (133), Expect = 6.020e-6
Identity = 38/104 (36.54%), Postives = 55/104 (52.88%), Query Frame = 1
Query:    1 AADLKELDLSFNCFGEKGGEALGASL-NVNTSLETLGLASNAINPRACFVICQGLMQNSSIRNIDLSNNSLGRIGVGCVMALPAEVGDRIE-IRLDHCNFMVGC 306
            ++ L+ELDLS N  G  G   L A L + + +LETL L    ++ + C  +  GL  NSS+R +DLSNN L   GV  + A        +E +RL+ C+    C
Sbjct:  633 SSSLRELDLSNNDLGNSGVMLLSAGLGSPHCTLETLRLNCCMLSEKCCDALASGLSSNSSLRELDLSNNDLQNSGVKLLSAGLGSPHCTLETLRLNGCHLSEIC 736          
BLAST of mRNA_L-elsbetiae_contig5747.14145.1 vs. uniprot
Match: UPI00074011C9 (ribonuclease inhibitor-like n=1 Tax=Lepisosteus oculatus TaxID=7918 RepID=UPI00074011C9)

HSP 1 Score: 54.3 bits (129), Expect = 6.290e-6
Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = 1
Query:    4 ADLKELDLSFNCFGEKGGEALGASL-NVNTSLETLGLASNAINPRACFVICQGLM-QNSSIRNIDLSNNSLGRIGVGCVMALPAEVGDRIE-IRLDHCNFMVGC 306
            + L+ELDL  N  G+ G + L A+L + N  L TLG+    +  R C  +   L  Q+SS+R +DLS+NSLG  GV  + A       ++  +R++ C     C
Sbjct:   23 SSLRELDLGCNNLGDSGVKLLSAALRDPNCKLTTLGMKWCELTKRCCEDLASALQSQHSSLREVDLSDNSLGDSGVKLLSAALTNPNCKLTALRMESCKLTERC 126          
BLAST of mRNA_L-elsbetiae_contig5747.14145.1 vs. uniprot
Match: A0A8C5BVN8_GADMO (Uncharacterized protein n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5BVN8_GADMO)

HSP 1 Score: 54.7 bits (130), Expect = 1.370e-5
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 1
Query:    1 AADLKELDLSFNCFGEKGGEALGASL-NVNTSLETLGLASNAINPRACFVICQGLMQNSSIRNIDLSNNSLGRIGVGCVMA 240
            ++ L+ELDLS N  G  G   L A L + + +LETL L    ++ + C  +  GL  NSS+R +DLSNN L   GV  + A
Sbjct:  385 SSSLRELDLSNNDLGNSGVMLLSAGLGSPHCTLETLRLNCCMLSEKCCDALASGLSSNSSLRELDLSNNDLQNSGVKLLSA 465          
BLAST of mRNA_L-elsbetiae_contig5747.14145.1 vs. uniprot
Match: A0A8C5FB53_GADMO (NACHT domain-containing protein n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5FB53_GADMO)

HSP 1 Score: 54.7 bits (130), Expect = 1.430e-5
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 1
Query:    1 AADLKELDLSFNCFGEKGGEALGASL-NVNTSLETLGLASNAINPRACFVICQGLMQNSSIRNIDLSNNSLGRIGVGCVMA 240
            ++ L+ELDLS N  G  G   L A L + + +LETL L    ++ + C  +  GL  NSS+R +DLSNN L   GV  + A
Sbjct:  520 SSSLRELDLSNNDLGNSGVMLLSAGLGSPHCTLETLRLNCCMLSEKCCDALASGLSSNSSLRELDLSNNDLQNSGVKLLSA 600          
BLAST of mRNA_L-elsbetiae_contig5747.14145.1 vs. uniprot
Match: A0A8C4ZW11_GADMO (NACHT domain-containing protein n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZW11_GADMO)

HSP 1 Score: 54.7 bits (130), Expect = 1.450e-5
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 1
Query:    1 AADLKELDLSFNCFGEKGGEALGASL-NVNTSLETLGLASNAINPRACFVICQGLMQNSSIRNIDLSNNSLGRIGVGCVMA 240
            ++ L+ELDLS N  G  G   L A L + + +LETL L    ++ + C  +  GL  NSS+R +DLSNN L   GV  + A
Sbjct:  618 SSSLRELDLSNNDLGNSGVMLLSAGLGSPHCTLETLRLNCCMLSEKCCDALASGLSSNSSLRELDLSNNDLQNSGVKLLSA 698          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5747.14145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G0Q5_ECTSI3.020e-4973.04Hypothetical leucine rich repeat calcium binding p... [more]
A0A482ST86_9ARCH2.620e-2331.29Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3H921_9STRA5.710e-2232.53Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A7S4D9J0_HETAK1.800e-1432.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0K1S5_CAFRO1.150e-832.19Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
UPI0011B4B49A6.020e-636.54NACHT, LRR and PYD domains-containing protein 12-l... [more]
UPI00074011C96.290e-634.62ribonuclease inhibitor-like n=1 Tax=Lepisosteus oc... [more]
A0A8C5BVN8_GADMO1.370e-540.74Uncharacterized protein n=1 Tax=Gadus morhua TaxID... [more]
A0A8C5FB53_GADMO1.430e-540.74NACHT domain-containing protein n=1 Tax=Gadus morh... [more]
A0A8C4ZW11_GADMO1.450e-540.74NACHT domain-containing protein n=1 Tax=Gadus morh... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5747contigL-elsbetiae_contig5747:7553..11640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.7
Seed ortholog evalue7.1e-44
Seed eggNOG ortholog2880.D7G0Q5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size515
Cds size513
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5747.14145.1prot_L-elsbetiae_contig5747.14145.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5747 7553..11640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816614.877467-CDS-L-elsbetiae_contig5747:7552..76361622816614.877467-CDS-L-elsbetiae_contig5747:7552..7636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5747 7553..7636 -
1691683686.151459-CDS-L-elsbetiae_contig5747:7552..76361691683686.151459-CDS-L-elsbetiae_contig5747:7552..7636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5747 7553..7636 -
1622816614.8894067-CDS-L-elsbetiae_contig5747:8524..86201622816614.8894067-CDS-L-elsbetiae_contig5747:8524..8620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5747 8525..8620 -
1691683686.1630745-CDS-L-elsbetiae_contig5747:8524..86201691683686.1630745-CDS-L-elsbetiae_contig5747:8524..8620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5747 8525..8620 -
1622816614.8996518-CDS-L-elsbetiae_contig5747:9380..94861622816614.8996518-CDS-L-elsbetiae_contig5747:9380..9486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5747 9381..9486 -
1691683686.1745017-CDS-L-elsbetiae_contig5747:9380..94861691683686.1745017-CDS-L-elsbetiae_contig5747:9380..9486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5747 9381..9486 -
1622816614.9101608-CDS-L-elsbetiae_contig5747:10881..110091622816614.9101608-CDS-L-elsbetiae_contig5747:10881..11009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5747 10882..11009 -
1691683686.1842196-CDS-L-elsbetiae_contig5747:10881..110091691683686.1842196-CDS-L-elsbetiae_contig5747:10881..11009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5747 10882..11009 -
1622816614.923595-CDS-L-elsbetiae_contig5747:11541..116401622816614.923595-CDS-L-elsbetiae_contig5747:11541..11640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5747 11542..11640 -
1691683686.193927-CDS-L-elsbetiae_contig5747:11541..116401691683686.193927-CDS-L-elsbetiae_contig5747:11541..11640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5747 11542..11640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5747.14145.1

>prot_L-elsbetiae_contig5747.14145.1 ID=prot_L-elsbetiae_contig5747.14145.1|Name=mRNA_L-elsbetiae_contig5747.14145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=171bp
AADLKELDLSFNCFGEKGGEALGASLNVNTSLETLGLASNAINPRACFVI
CQGLMQNSSIRNIDLSNNSLGRIGVGCVMALPAEVGDRIEIRLDHCNFMV
GCESCWFDDDQLWPSYDLRMDQPYDRAVAFHLIRRAARDEGLKLKRVGHI
MAGESEKQINLVVGSGQSRR*
back to top

mRNA from alignment at L-elsbetiae_contig5747:7553..11640-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5747.14145.1 ID=mRNA_L-elsbetiae_contig5747.14145.1|Name=mRNA_L-elsbetiae_contig5747.14145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4088bp|location=Sequence derived from alignment at L-elsbetiae_contig5747:7553..11640- (Laminarionema elsbetiae ELsaHSoW15)
GCCGCTGACCTCAAAGAGCTAGATCTGAGCTTCAACTGCTTCGGGGAAAA GGGCGGGGAGGCGTTGGGGGCTAGCTTGAACGTCAACACCAGCTTGGAGG TCAGGCGCCCACTCTAAATTGTCGTCGCATCTACATACTCGTGGCGCCAT GTGCTACAGTAAATAGAGATAAACAGGATCGCCATTGGCATCGCTAGAAT AGCGTTAGTGCACACTACATTCTAGGCAGCTAGGCAGCTCGAAAACACTT GAAACCAATAACGTAAAACTGCTGGTGTTCTCTCGAGTAAACCGTGCTTT TAAGAGGACCGATACATATATCCATCCAGCGGGTTTCCATCTACTATCGC TGATCAGCAATTGCTGGCGACAGAGCTTGCCAACAAAGCGTCCCACCCAT CCTTTTTAGCGCAGTGCAATTTTGATCCTTACAATACCGCAGATGGAGTG GTGAAGGCTGCATGGTGCTCTACCACCGTTTTTCTCACGTGGGGCTCATG TGCTCGTTCCATGGCGTCATTGTGGAATCTTATTATACACTGTCGGGCTG TCGGGACGTCGGGACCGTACTGTGCTGGTTCCATGACGTCATTGTACCAT CGGTCTGTCGGTGTCGATTCAATGATGTCAGACGCTAGGCCTCGCCAGCA ACGCGATCAATCCCCGAGCCTGCTTCGTGATCTGCCAAGGCCTCATGCAA AACTCGAGCATCCGCAACATCGACCTCTCCAACAACTCCCTCGGCAGGAT CGGAGTCGGGTAAAAAATGACTTGCCTATAATGTACACACCTTGCCTTGC TTGCTTTGCCTTGCCCTGCCTTGCCCTGCCTTGCCTCATCTTGCCTTACG CCACCACACCCCTGGGCAGACTCAATGTTTTCCGGCCGTTCGGCCGCATG GTTTAAGCACGAGCTACAAAAAAAAAGTTTTTCTTGCTAAAAAAACGCCG GAGAATTCAACAAAAACAACGGAAAACAGATCGGACACCGTTAAGGGGGC GCATAGACCTAACGGACCAGAATTATGAGACAGAGGAAGTACCTTGCCCC AACTTGCCTTACCCCACCACACCCCTGGAATTGTCATATTCGCTCAACCT AGGGCAGCCCTCTAGTGCGCGCATTCTTTGTATCGAACACACAACAACAA CAAAACTCAGGGATTGTTGTACATGATTGACTGCTTGAGTTTTTTTTACA TTGGATAGAGACTTGCCGCTGAATTCCCCCCCGGAAAATCCTGTAGACGG TACAATCAACACAGTTAAGTATTATTTTGTGCAATGTTGCAGCAAACGCG CCGGGTCCGCATGTGGTCGTAAGGGCATAGGCAGGTGCGAGTCGGGGAGG GGGTCCGAGCGTCGTGTTTGTGTGTTGGTGCGTGGACTCTGTTCGCTCGC GCGGACCCTTGTTGGAGGCGTCTGTCTCTGGTAAACCTTGACTCACATAT GTATATTAGAAGAAAGAGAAACGAACTAAGTGACAGTGCCATCAGGGGTA AAGAGTCCCCGCGACATGCAGATGACATACTACCACCCCAACTGTGTGCC CCCCACTGATTGCCCCCAAACCAGTATCTTTACCAAGTATGTACCACAAA CACGTCGTGTATCCAATCCATTGTTTTTTGCACGCATCGGAAGCATGCAC ATACGCAGCGTCTCATCTCGGGGCGATATTCTTGTGTCTTGTGTCGCGGT ACCCAGATGCTGCCCGCCTTCGAATTTGTCGGCACAAAATTACGGGAGGG CTTTGACGCAAGCAGGCGTGTTTGTGTTAGGGATCGATCCGATCGGTTGA CGGTTTTGGCTCTATTAGGTGTCGGATGAAGATGACTCGTAGGTGGACAT GCTGAGGCGCCGCTGAAACGTGCGTCCGGGTGCTAAACTTAGGGTACAGC AGTGTGTGCGTTGTCGCGGCTTCTGCGCGCTGTAGAACTGTAGGTAGCGA CGGCATTTGGTCCTAGCTTTCTGTTTTCCACACGAAAGAGTGGGTGAATG GTGCGTGTGCGTATCGCGCTGGTCGATGGGGGCGGGTATATATCCGATGG GCAGAATTGCTTGGTGGTGTCTGCGCCAGGAATGCTGGAAAGTCGCGGTG GCTTTCTTGAGCGGCCAACCCACGTTTTAACGTTGATGTTTTATCTTTCG TCAGGTGCGTAATGGCGCTGCCGGCGGAGGTTGGGGACAGAATCGAGATT CGCCTGGACCACTGCAACTTCATGGTCGGCTGCGAGTCCTGCTGGTTTGA CGACGACCAGGTACAGTAGATACGATCGTGGTACCCAAAAAAAACGAGTC GGCGTCAGATTCGGCAGATAGAGAACTGTTGTTGTTGTTGTTGTTGTTGT TGTTGTTGTTGTCGTGGCCTTGACATGAAAAATGATGCCGGCCTCTCTTT CCAGTATCTCTATCCGTCCGTGCCAATCCAAAATATTTGGCGCGGTCCAT TCCCGTGATCACAGGCTTACTTACCCTAAAAGGGTACATGCTGTAACATA AAGTGGACCCGAAGGGTCGTCAGCAAAGCACAAACACATAAAGAGTAGGC ACAGATATTCTGGAGCTGTATAGCAAGCAGAACAAATGCGGGGTATTTCC CATATCTTCCGTGGCCTCTTGGTAACCCGAGTTCGTAGCCGACATAAGCC GGGGGAAGGGCTGTGCACCGTGTGGCGGCGATTGCACCTATTGTGCACTT TCAGGTTGACACACTTTGCGTTTAGGAGATGTTGGACTAACGACCTTACG TCTCATGAACCGCTCTCAGGTAAAGGAGCTTTTCTCGAAACCACGGCAAC TCTTTCCCTCGGAGCATGCCATGTGCCCCTTGGACACGCCTTCCGCGTGA ACGCTATTCGCTATTCGGGCAGAAAACTATCTCACAAAACCGAAAAAGCG CCTTGAACCAAAAGAAAAACGCCTTGAACAAAAAACACCTGGAATAAAAA GCACCCGTGGCAGGATTTTGCGGATTCAGGTTAAAATTCTCGCCTGATGT GGGTGTTGTTTCTGTTGCAGCTATGGCCATCCTACGACCTTCGGATGGAC CAACCGTACGACCGGGCTGTCGCTTTCCATCTCATTCGAAGAGCGGCTAG AGATGAAGGACTCAAGGTGAGGCTATCAGCGCCGATCATAACGGTAGTGC GTATCCCTAAGCCACCCTTGACGGGCCTAGGTCGAGCGTGAACGCCGACT ACGCCCTCGCCACCAATCATGCTATTGTACATCCGGCGGGGGTTTGTCCA AACATTGGTAAACCAAGCCGCAACGCGTTTATCCTATCACTCTGTTGAGG GCGACTCGGCTAACCTGCAAAGTACCTTGCGGAAGACATCTGCATCTAAG CTGGGCTATTGACTAAGGCGTTTCCCGTGTAAAGACAAAACCGCCGACTA TCAACAACAGCACAAGCCTACGATCAAAGGAGCAGTTCCGTTGAGCAGCA AAACCACCCGACAAGTTTGAGCCTCGTTCACGAGCAGCGTATACATACAG GAGTAAATATATACTTCTATATATATTTCCTTCCCATTAATGGCTTATTC ATCGTCTGCCCCACTGGCCCCCTTCCTCCTCTACGACTAGTTAGACGACC CAACCGGGGTCACACAGAAGGGGGGGGCTGCGGTTGTACCACGGCTGTTC GAGCGTCTTCCTCATCCATCGCCTGCAACGTCGGAGAACCAACGCCTTTC GGGCACTGCCAGCGCTTAGTCTTCACCCTTATCGCGAAACCTTTATTCCC AAGAGTTGCTTATTTGTCCTCGTCACGGAGCGCTTTGTGTAGAAGCCGAA ATCACACCGTTAGACCAGTCAGCTACGTTCGATTTCGGCTCCTAAAATGG TTTGTCGTGGGTTCGAATGCTAGACCGACCACGTTTTTCTCCTGAGGCCC GGCCCTGTAATGGTTTGATTTCGGCTTCTAAAGTGCGCACGTTGACGGCT GCCCCCTGCCTGCGGCTGCCGGTCGACCTTTCCTTCCCTCCTGTTGTAAA CAAGTTGAAACGGGTGGGACACATAATGGCTGGCGAGTCTGAGAAGCAAA TCAACCTCGTCGTCGGCAGCGGGCAGTCCCGAAGGTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5747:7553..11640-

>mRNA_L-elsbetiae_contig5747.14145.1 ID=mRNA_L-elsbetiae_contig5747.14145.1|Name=mRNA_L-elsbetiae_contig5747.14145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1026bp|location=Sequence derived from alignment at L-elsbetiae_contig5747:7553..11640- (Laminarionema elsbetiae ELsaHSoW15)
GCCGCTGACCTCAAAGAGCTAGATCTGAGCTTCAACTGCTTCGGGGAAAA
GGGCGGGGAGGCGTTGGGGGCTAGCTTGAACGTCAACACCAGCTTGGAGG
CCGCTGACCTCAAAGAGCTAGATCTGAGCTTCAACTGCTTCGGGGAAAAG
GGCGGGGAGGCGTTGGGGGCTAGCTTGAACGTCAACACCAGCTTGGAGAC
GCTAGGCCTCGCCAGCAACGCGATCAATCCCCGAGCCTGCTTCGTGATCT
GCCAAGGCCTCATGCAAAACTCGAGCATCCGCAACATCGACCTCTCCAAC
AACTCCCTCGGCAGGATCGGAGTCGGACGCTAGGCCTCGCCAGCAACGCG
ATCAATCCCCGAGCCTGCTTCGTGATCTGCCAAGGCCTCATGCAAAACTC
GAGCATCCGCAACATCGACCTCTCCAACAACTCCCTCGGCAGGATCGGAG
TCGGGTGCGTAATGGCGCTGCCGGCGGAGGTTGGGGACAGAATCGAGATT
CGCCTGGACCACTGCAACTTCATGGTCGGCTGCGAGTCCTGCTGGTTTGA
CGACGACCAGGTGCGTAATGGCGCTGCCGGCGGAGGTTGGGGACAGAATC
GAGATTCGCCTGGACCACTGCAACTTCATGGTCGGCTGCGAGTCCTGCTG
GTTTGACGACGACCAGCTATGGCCATCCTACGACCTTCGGATGGACCAAC
CGTACGACCGGGCTGTCGCTTTCCATCTCATTCGAAGAGCGGCTAGAGAT
GAAGGACTCAAGCTATGGCCATCCTACGACCTTCGGATGGACCAACCGTA
CGACCGGGCTGTCGCTTTCCATCTCATTCGAAGAGCGGCTAGAGATGAAG
GACTCAAGTTGAAACGGGTGGGACACATAATGGCTGGCGAGTCTGAGAAG
CAAATCAACCTCGTCGTCGGCAGCGGGCAGTCCCGAAGGTAGTTGAAACG
GGTGGGACACATAATGGCTGGCGAGTCTGAGAAGCAAATCAACCTCGTCG
TCGGCAGCGGGCAGTCCCGAAGGTAG
back to top