mRNA_L-elsbetiae_contig5739.14136.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5739.14136.1
Unique NamemRNA_L-elsbetiae_contig5739.14136.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5739.14136.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 2.890e-47
Identity = 89/128 (69.53%), Postives = 105/128 (82.03%), Query Frame = 2 
Query: 1229 LVPCDFIEQSFGSNIQGWTLAGVRQFDMYRMVSDAVKPRQLGEPGRQKVRNMVKKVQRECWSTPTDALDLVSELKDTPGCFVKWETDDLHRLKHVLWSTGQQQVFARQWGGIVIQDNTCLTNRCGLLL 1612
            +VP + +E  F  +I+ WTLAG++QFDMYR++S+ VKP QLGEPGRQKV       QRECWSTPTDALDLVSELKD  GC+VK++TD LHRLKHV WSTGQQQVFARQWGGIV+QDNT LTNR  +L+
Sbjct:    1 MVPGEDLEARFKGDIRRWTLAGLKQFDMYRLISELVKPLQLGEPGRQKV-------QRECWSTPTDALDLVSELKDMAGCYVKYDTDGLHRLKHVFWSTGQQQVFARQWGGIVLQDNTALTNRVLVLI 121
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BLAST of mRNA_L-elsbetiae_contig5739.14136.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.610e-28
Identity = 74/162 (45.68%), Postives = 103/162 (63.58%), Query Frame = 2 
Query: 1121 LVRASWPADDVPKLGK-VCLTHHPDCTAEPTAVAKKD--LVPCDFIEQSFGSNIQGWTLAGVRQFDMYRMVSDAVKPRQLGEPGRQKVRNMVKKVQRECWSTPTDALDLVSELKDTPGCFVKWETDDLHRLKHVLWSTGQQQVFARQWGGIVIQDNTCLTNR 1597
            L R  +     P  GK V L HH DC  +  A   KD  +VP + +E+ +  +I+  TL GVR F MYR + + +KPR+LG  G +KVRNM  KV R  W++ TDAL+LV++L+  P   VKWE+D  H L+ ++W++ +Q + AR +GGIVIQDNTCL NR
Sbjct:  709 LHRQGFKGKTTPVRGKKVNLEHHADCEMQHVAKKHKDDSVVPLEELEK-WADDIKSMTLGGVRPFTMYRCIGENIKPRKLGTRGVRKVRNMSDKVSRGRWASKTDALELVADLERGPAT-VKWESDANHVLRSIMWASPEQIMLARTYGGIVIQDNTCLINR 868
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BLAST of mRNA_L-elsbetiae_contig5739.14136.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 9.020e-18
Identity = 47/96 (48.96%), Postives = 71/96 (73.96%), Query Frame = 2 
Query: 1310 MYRMVSDAVKPRQLGEPGRQKVRNMVKKVQRECWSTPTDALDLVSELKDTPGCFVKWETDDLHRLKHVLWSTGQQQVFARQWGGIVIQDNTCLTNR 1597
            MYR +++++KP++LG  G +KVRNM +KV  E W++  DAL+LV+EL +     VKWE D  + L+ ++W++ +Q + AR +GG+VIQDNTCLTNR
Sbjct:    1 MYRCIAESIKPQKLGPRGARKVRNMSRKVTGELWASSGDALELVAEL-ERGNETVKWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNR 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5739.14136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JEJ0_9PHAE2.890e-4769.53SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE3.610e-2845.68SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FLF6_ECTSI9.020e-1848.96Putative far-red impaired response protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5739contigL-elsbetiae_contig5739:4773..7565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue2.2e-18
Seed eggNOG ortholog2880.D7FLF6
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1811
Cds size843
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5739.14136.1prot_L-elsbetiae_contig5739.14136.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5739 5740..7565 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816613.9387593-UTR-L-elsbetiae_contig5739:4772..57391622816613.9387593-UTR-L-elsbetiae_contig5739:4772..5739Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5739 4773..5739 +
1691683685.5056453-UTR-L-elsbetiae_contig5739:4772..57391691683685.5056453-UTR-L-elsbetiae_contig5739:4772..5739Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5739 4773..5739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816613.9496322-CDS-L-elsbetiae_contig5739:5739..57541622816613.9496322-CDS-L-elsbetiae_contig5739:5739..5754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 5740..5754 +
1691683685.518156-CDS-L-elsbetiae_contig5739:5739..57541691683685.518156-CDS-L-elsbetiae_contig5739:5739..5754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 5740..5754 +
1622816613.9629-CDS-L-elsbetiae_contig5739:5934..60571622816613.9629-CDS-L-elsbetiae_contig5739:5934..6057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 5935..6057 +
1691683685.5284169-CDS-L-elsbetiae_contig5739:5934..60571691683685.5284169-CDS-L-elsbetiae_contig5739:5934..6057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 5935..6057 +
1622816613.9740305-CDS-L-elsbetiae_contig5739:6355..64181622816613.9740305-CDS-L-elsbetiae_contig5739:6355..6418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 6356..6418 +
1691683685.538288-CDS-L-elsbetiae_contig5739:6355..64181691683685.538288-CDS-L-elsbetiae_contig5739:6355..6418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 6356..6418 +
1622816613.9878817-CDS-L-elsbetiae_contig5739:6698..69021622816613.9878817-CDS-L-elsbetiae_contig5739:6698..6902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 6699..6902 +
1691683685.5475442-CDS-L-elsbetiae_contig5739:6698..69021691683685.5475442-CDS-L-elsbetiae_contig5739:6698..6902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 6699..6902 +
1622816613.9998446-CDS-L-elsbetiae_contig5739:7127..75651622816613.9998446-CDS-L-elsbetiae_contig5739:7127..7565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 7128..7565 +
1691683685.556844-CDS-L-elsbetiae_contig5739:7127..75651691683685.556844-CDS-L-elsbetiae_contig5739:7127..7565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 7128..7565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5739.14136.1

>prot_L-elsbetiae_contig5739.14136.1 ID=prot_L-elsbetiae_contig5739.14136.1|Name=mRNA_L-elsbetiae_contig5739.14136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=281bp
MGIDRLSKEPGARIKRIKIVCVCAGKSTSTPKVAEVGKQRNTSSKRCGCE
FLVRASWPADDVPKLGKVCLTHHPDCTAEPTAVAKKDLVPCDFIEQSFGS
NIQGWTLAGVRQFDMYRMVSDAVKPRQLGEPGRQKVRNMVKKVQRECWST
PTDALDLVSELKDTPGCFVKWETDDLHRLKHVLWSTGQQQVFARQWGGIV
IQDNTCLTNRCGLLLSSCPYAAVGGVSSVVYGWSVRRPSRWPLIWSVRPI
HDSICDVVVGVGRLGFVQFFGESSTAAQTIP
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mRNA from alignment at L-elsbetiae_contig5739:4773..7565+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5739.14136.1 ID=mRNA_L-elsbetiae_contig5739.14136.1|Name=mRNA_L-elsbetiae_contig5739.14136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2793bp|location=Sequence derived from alignment at L-elsbetiae_contig5739:4773..7565+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGCGCTTTCCCGGAAAGCCAGGGATCGACTTGGATGGTTGTCACCTCC
GCGTGGTTTGGGATTACTTTGTTCGTTTGTGTGAGGGTTTCGGGGTCGTC
CAGGGCGTTGTTCTGCTTTTTTTACTCTGCCGCGAGCTACGTATTGAATC
GCGTCAACCCCCAACATGTACTACAGATGCGCCTTGCCGCCGGCATTGAC
GATGCGATGAGCGATGGCTCAGACGAGGAAAGCGACGGTGACTCATTCGA
CTATGACTCTGCCGATAGCGATGTCACACATGGGTGGAACAGCCAGGACG
ACTCCCTCTCGTCGGATGACGGTATGCGAACGGAAGATCGGTAGACCCAA
CGGCAGCTCGAATCAATGCGCAGCGTCCCGGCTGTGTAGCATTCCGTTTG
CCCCTCCCCTCCCGCACTCTGAGACGAAAGTACTAGAAGCGCAGGAAATA
CGCTGTTGGCCCCGAGTGGCCTTTCGGGAAATCATTTTGGGGTACATACT
GCTGTCGACGCTCCTTATTGGAAATCTTGTTGCCCACGTCGTTATACTTG
CTCGTCGAAAGGCAAGACTAATGGCTGTGTTGCCATTGTAAGTATGTCGT
AAAGCTTGGGTGTGCAGAGAAGAGTGTTGCCTGACACTTCTTCCGTGTAC
CTGTAGTTTTTTGTGCTTGAGTCGGATGGGAATTGTCGTGAAGCCTCTTG
AAGCTCCCGCCTCACCCTCTTCACTATAGAAAACCGCAACAGGAGTTGGA
ATGTGTTTTTGTGTGCCTGTTTTGGTCAGATGTTGGCGACGAGGAAGAGG
AAGACCAGGTGGACAGTTCAGCCCTCCCCGATCTGGAGTACGCCACGAAG
GGCGCTACTGCTCCTACCTTTGCCGTGTTAGCTAACCCCGAGGACACCTG
GGACGCGGTTGCGGACGCCATTAGGAAGGCCTTGGTCTTCCTTGGACACA
ACGGCAAAGTGAAAGTGATGGGAATTGACAGGGTACGTTTCGGATGTGCA
TGCTACCACACCCAGATTCCATGCTTGTGAATACATCTATCCCTCGTTCG
ATCAACCGTGCAACCTTCATCCGCGGTGCCACGACGATGAAGATCGTTGG
GTCTCCAAACTCTTACGCGTCTTTCTTGATGCCCCATGGCCGTTGGTCTG
TTTCCATGCCAGCTGTCGAAGGAGCCAGGTGCCCGTATCAAGCGGATCAA
GATCGTTTGTGTCTGCGCGGGCAAGTCGACCTCCACGCCGAAGGTCGCCG
AGGTCGGCAAGCAGAGGAACACGTCATCGAAAAGGGTACGAGCAAGCCTT
TTGCCTTGAGCCTATTGGCTTCTTGGGCCGATCACCATCTTGATACTCTT
GCCCTGCGCTACCGACATGACCCGCCGACAGCATTTCTTGTTCGTCGTCC
CGTATATACTCTAGGTTCGAGCTCTGTCGTAGGTTAGAGCAATACTCGCT
GCCCGCATCGGCAACAGTAGTACAGTTTTTTTTTCGAATTCGTGGAAGTA
TATTCCTTCCAGCTCTCCTCATGTTGTCTTGTCGATGGCCTCTCCACGCC
TCCACGAATGTTCGTCTTTCGCTGATGTTACAGTGTGGGTGCGAGTTCCT
TGTGAGGGCGAGCTGGCCGGCAGATGACGTACCGAAATTGGGCAAGGTGA
GACGGAGACAACTGAAGTACATTCGTCGAACCTCCCAATCGTTGATGGTC
GATTGGAGATGCTTACGTTTCTCTCGTGACGGTCATCGTTACCCCCCGAA
CGCTCCGCAAGCGCCGACGGCTTTAAAGGGAACAGTCTTATTGTTGAGGA
ATAACTTGGCGATGACAGTGTGTCAACGCAGCGGTTTGTGGCCTGCTTCC
ACACCGGTGTTGAAGCTTGAAGCGCTTTATTCCAACTCCCTCGCGTCGTG
CCGCCCGCAAATGCCCGTCTGCCCAGGTCTGCCTTACGCACCACCCGGAC
TGTACGGCGGAACCAACGGCAGTGGCGAAGAAGGACCTGGTCCCCTGCGA
TTTCATCGAGCAAAGCTTCGGAAGCAATATTCAAGGTTGGACGCTGGCGG
GGGTGAGACAGTTCGACATGTACCGTATGGTTTCCGATGCTGTGAAGCCT
CGTCAGCTTGGAGAGCCCGGCCGACAGAAGGTGGGGCAAGTCTTTGGGAG
AGTGTTTTTTCCGCCTTGGTTCACGCCTTGAGATGGTGATTTTCAAGGTC
AAACACTTTCGAACTCTTTCACACAGCTGTAGGCTAGGACGGTTTGGCAG
CTTTGCGCTTTGCTCTTTGCTGACGCTTCTCACCTGTGCCTGTGCGAGGG
CATTTGCGCAGTTCATTGACAAGCCCGTGCAACGTCTTTGGATATGGCAT
CATAGGTCAGAAACATGGTCAAGAAGGTGCAGCGCGAGTGCTGGTCTACG
CCAACCGACGCCCTCGATCTGGTGTCTGAATTGAAAGACACGCCTGGCTG
CTTCGTGAAGTGGGAGACAGATGACCTGCATCGATTAAAGCACGTGCTTT
GGTCCACCGGCCAGCAGCAAGTGTTCGCCCGCCAGTGGGGTGGAATTGTC
ATTCAAGACAATACGTGTCTCACGAACAGGTGCGGTTTACTACTCTCGAG
TTGTCCCTATGCCGCCGTCGGTGGTGTATCGTCCGTGGTGTATGGGTGGA
GTGTAAGAAGACCATCCCGCTGGCCTCTAATTTGGTCCGTGAGACCAATA
CACGACTCAATTTGCGACGTTGTGGTTGGCGTTGGCCGTCTAGGCTTCGT
TCAATTCTTCGGGGAAAGCAGCACTGCTGCCCAAACGATACCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5739:4773..7565+

>mRNA_L-elsbetiae_contig5739.14136.1 ID=mRNA_L-elsbetiae_contig5739.14136.1|Name=mRNA_L-elsbetiae_contig5739.14136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1686bp|location=Sequence derived from alignment at L-elsbetiae_contig5739:4773..7565+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAATTGACAGGATGGGAATTGACAGGCTGTCGAAGGAGCCAGGTGC
CCGTATCAAGCGGATCAAGATCGTTTGTGTCTGCGCGGGCAAGTCGACCT
CCACGCCGAAGGTCGCCGAGGTCGGCAAGCAGAGGAACACGTCATCGAAA
AGGCTGTCGAAGGAGCCAGGTGCCCGTATCAAGCGGATCAAGATCGTTTG
TGTCTGCGCGGGCAAGTCGACCTCCACGCCGAAGGTCGCCGAGGTCGGCA
AGCAGAGGAACACGTCATCGAAAAGGTGTGGGTGCGAGTTCCTTGTGAGG
GCGAGCTGGCCGGCAGATGACGTACCGAAATTGGGCAAGTGTGGGTGCGA
GTTCCTTGTGAGGGCGAGCTGGCCGGCAGATGACGTACCGAAATTGGGCA
AGGTCTGCCTTACGCACCACCCGGACTGTACGGCGGAACCAACGGCAGTG
GCGAAGAAGGACCTGGTCCCCTGCGATTTCATCGAGCAAAGCTTCGGAAG
CAATATTCAAGGTTGGACGCTGGCGGGGGTGAGACAGTTCGACATGTACC
GTATGGTTTCCGATGCTGTGAAGCCTCGTCAGCTTGGAGAGCCCGGCCGA
CAGAAGGTCTGCCTTACGCACCACCCGGACTGTACGGCGGAACCAACGGC
AGTGGCGAAGAAGGACCTGGTCCCCTGCGATTTCATCGAGCAAAGCTTCG
GAAGCAATATTCAAGGTTGGACGCTGGCGGGGGTGAGACAGTTCGACATG
TACCGTATGGTTTCCGATGCTGTGAAGCCTCGTCAGCTTGGAGAGCCCGG
CCGACAGAAGGTCAGAAACATGGTCAAGAAGGTGCAGCGCGAGTGCTGGT
CTACGCCAACCGACGCCCTCGATCTGGTGTCTGAATTGAAAGACACGCCT
GGCTGCTTCGTGAAGTGGGAGACAGATGACCTGCATCGATTAAAGCACGT
GCTTTGGTCCACCGGCCAGCAGCAAGTGTTCGCCCGCCAGTGGGGTGGAA
TTGTCATTCAAGACAATACGTGTCTCACGAACAGGTGCGGTTTACTACTC
TCGAGTTGTCCCTATGCCGCCGTCGGTGGTGTATCGTCCGTGGTGTATGG
GTGGAGTGTAAGAAGACCATCCCGCTGGCCTCTAATTTGGTCCGTGAGAC
CAATACACGACTCAATTTGCGACGTTGTGGTTGGCGTTGGCCGTCTAGGC
TTCGTTCAATTCTTCGGGGAAAGCAGCACTGCTGCCCAAACGATACCAGT
CAGAAACATGGTCAAGAAGGTGCAGCGCGAGTGCTGGTCTACGCCAACCG
ACGCCCTCGATCTGGTGTCTGAATTGAAAGACACGCCTGGCTGCTTCGTG
AAGTGGGAGACAGATGACCTGCATCGATTAAAGCACGTGCTTTGGTCCAC
CGGCCAGCAGCAAGTGTTCGCCCGCCAGTGGGGTGGAATTGTCATTCAAG
ACAATACGTGTCTCACGAACAGGTGCGGTTTACTACTCTCGAGTTGTCCC
TATGCCGCCGTCGGTGGTGTATCGTCCGTGGTGTATGGGTGGAGTGTAAG
AAGACCATCCCGCTGGCCTCTAATTTGGTCCGTGAGACCAATACACGACT
CAATTTGCGACGTTGTGGTTGGCGTTGGCCGTCTAGGCTTCGTTCAATTC
TTCGGGGAAAGCAGCACTGCTGCCCAAACGATACCA
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