prot_L-elsbetiae_contig5739.14136.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5739.14136.1
Unique Nameprot_L-elsbetiae_contig5739.14136.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length281
Homology
BLAST of mRNA_L-elsbetiae_contig5739.14136.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.050e-50
Identity = 89/128 (69.53%), Postives = 105/128 (82.03%), Query Frame = 0
Query:   88 LVPCDFIEQSFGSNIQGWTLAGVRQFDMYRMVSDAVKPRQLGEPGRQKVRNMVKKVQRECWSTPTDALDLVSELKDTPGCFVKWETDDLHRLKHVLWSTGQQQVFARQWGGIVIQDNTCLTNRCGLLL 215
            +VP + +E  F  +I+ WTLAG++QFDMYR++S+ VKP QLGEPGRQKV       QRECWSTPTDALDLVSELKD  GC+VK++TD LHRLKHV WSTGQQQVFARQWGGIV+QDNT LTNR  +L+
Sbjct:    1 MVPGEDLEARFKGDIRRWTLAGLKQFDMYRLISELVKPLQLGEPGRQKV-------QRECWSTPTDALDLVSELKDMAGCYVKYDTDGLHRLKHVFWSTGQQQVFARQWGGIVLQDNTALTNRVLVLI 121          
BLAST of mRNA_L-elsbetiae_contig5739.14136.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 8.920e-31
Identity = 74/162 (45.68%), Postives = 103/162 (63.58%), Query Frame = 0
Query:   52 LVRASWPADDVPKLGK-VCLTHHPDCTAEPTAVAKKD--LVPCDFIEQSFGSNIQGWTLAGVRQFDMYRMVSDAVKPRQLGEPGRQKVRNMVKKVQRECWSTPTDALDLVSELKDTPGCFVKWETDDLHRLKHVLWSTGQQQVFARQWGGIVIQDNTCLTNR 210
            L R  +     P  GK V L HH DC  +  A   KD  +VP + +E+ +  +I+  TL GVR F MYR + + +KPR+LG  G +KVRNM  KV R  W++ TDAL+LV++L+  P   VKWE+D  H L+ ++W++ +Q + AR +GGIVIQDNTCL NR
Sbjct:  709 LHRQGFKGKTTPVRGKKVNLEHHADCEMQHVAKKHKDDSVVPLEELEK-WADDIKSMTLGGVRPFTMYRCIGENIKPRKLGTRGVRKVRNMSDKVSRGRWASKTDALELVADLERGPAT-VKWESDANHVLRSIMWASPEQIMLARTYGGIVIQDNTCLINR 868          
BLAST of mRNA_L-elsbetiae_contig5739.14136.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.170e-19
Identity = 47/96 (48.96%), Postives = 71/96 (73.96%), Query Frame = 0
Query:  115 MYRMVSDAVKPRQLGEPGRQKVRNMVKKVQRECWSTPTDALDLVSELKDTPGCFVKWETDDLHRLKHVLWSTGQQQVFARQWGGIVIQDNTCLTNR 210
            MYR +++++KP++LG  G +KVRNM +KV  E W++  DAL+LV+EL +     VKWE D  + L+ ++W++ +Q + AR +GG+VIQDNTCLTNR
Sbjct:    1 MYRCIAESIKPQKLGPRGARKVRNMSRKVTGELWASSGDALELVAEL-ERGNETVKWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNR 95          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5739.14136.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JEJ0_9PHAE1.050e-5069.53SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE8.920e-3145.68SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FLF6_ECTSI2.170e-1948.96Putative far-red impaired response protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5739contigL-elsbetiae_contig5739:5740..7565 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5739.14136.1mRNA_L-elsbetiae_contig5739.14136.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5739 4773..7565 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5739.14136.1 ID=prot_L-elsbetiae_contig5739.14136.1|Name=mRNA_L-elsbetiae_contig5739.14136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=281bp
MGIDRLSKEPGARIKRIKIVCVCAGKSTSTPKVAEVGKQRNTSSKRCGCE
FLVRASWPADDVPKLGKVCLTHHPDCTAEPTAVAKKDLVPCDFIEQSFGS
NIQGWTLAGVRQFDMYRMVSDAVKPRQLGEPGRQKVRNMVKKVQRECWST
PTDALDLVSELKDTPGCFVKWETDDLHRLKHVLWSTGQQQVFARQWGGIV
IQDNTCLTNRCGLLLSSCPYAAVGGVSSVVYGWSVRRPSRWPLIWSVRPI
HDSICDVVVGVGRLGFVQFFGESSTAAQTIP
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