Homology
BLAST of mRNA_L-elsbetiae_contig5720.14113.1 vs. uniprot
Match:
A0A6H5K450_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K450_9PHAE)
HSP 1 Score: 87.4 bits (215), Expect = 3.870e-17
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 1
Query: 256 AAAAAAHWVLLTDAALYIIET-GVAGAAAGAG-SNKSSDSLCRLERHRVWSLSLPLETRALPNGDEVAVR 459
A A AAHW+LLTD A+Y++ET G+ AA G + + ++ LC L+RHR+WSLSLPLETRALPNGDEVAVR
Sbjct: 808 APATAAHWILLTDGAMYVVETRGIGAAAEGERPAARETNGLCCLKRHRLWSLSLPLETRALPNGDEVAVR 877
BLAST of mRNA_L-elsbetiae_contig5720.14113.1 vs. uniprot
Match:
D8LKM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM4_ECTSI)
HSP 1 Score: 86.3 bits (212), Expect = 6.140e-17
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 256 AAAAAAHWVLLTDAALYIIETGVAGAAAGAG--SNKSSDSLCRLERHRVWSLSLPLETRALPNGDEVAVR 459
A A AAHW+LLTD A+Y++ET GAAA + + ++ LC L+RHR+WSLSLPLETRALPNGDE+AVR
Sbjct: 139 APATAAHWILLTDGAMYVVETRGLGAAAEGERPAARETNGLCCLKRHRLWSLSLPLETRALPNGDEMAVR 208
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5720.14113.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 3.87e-17 / Id = 64.29 Expect = 6.14e-17 / Id = 62.86 Sequence A0A6H5K450_9PHAE D8LKM4_ECTSI
Match Name E-value Identity Description
A0A6H5K450_9PHAE 3.870e-17 64.29 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKM4_ECTSI 6.140e-17 62.86 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 3
Model size 463
Cds size 459
Stop 0
Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816611.9160123-CDS-L-elsbetiae_contig5720:4105..4344 1622816611.9160123-CDS-L-elsbetiae_contig5720:4105..4344 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5720 4106..4344 +
1691683684.1841006-CDS-L-elsbetiae_contig5720:4105..4344 1691683684.1841006-CDS-L-elsbetiae_contig5720:4105..4344 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5720 4106..4344 +
1622816611.9293644-CDS-L-elsbetiae_contig5720:5050..5157 1622816611.9293644-CDS-L-elsbetiae_contig5720:5050..5157 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5720 5051..5157 +
1691683684.195131-CDS-L-elsbetiae_contig5720:5050..5157 1691683684.195131-CDS-L-elsbetiae_contig5720:5050..5157 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5720 5051..5157 +
1622816611.9398322-CDS-L-elsbetiae_contig5720:6282..6395 1622816611.9398322-CDS-L-elsbetiae_contig5720:6282..6395 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5720 6283..6395 +
1691683684.2059894-CDS-L-elsbetiae_contig5720:6282..6395 1691683684.2059894-CDS-L-elsbetiae_contig5720:6282..6395 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5720 6283..6395 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5720.14113.1
>prot_L-elsbetiae_contig5720.14113.1 ID=prot_L-elsbetiae_contig5720.14113.1|Name=mRNA_L-elsbetiae_contig5720.14113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
RVQGCGVVGGGICAAAAAAVAALAREKEGAGGGAGGGGRDGDAAPEAAAL AEGARPLVRPRGASRGAGPALHDIVAGGESSRPAVAAAAAAHWVLLTDAA LYIIETGVAGAAAGAGSNKSSDSLCRLERHRVWSLSLPLETRALPNGDEV AVR back to top mRNA from alignment at L-elsbetiae_contig5720:4106..6397+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5720.14113.1 ID=mRNA_L-elsbetiae_contig5720.14113.1|Name=mRNA_L-elsbetiae_contig5720.14113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2292bp|location=Sequence derived from alignment at L-elsbetiae_contig5720:4106..6397+ (Laminarionema elsbetiae ELsaHSoW15)AGAGTCCAGGGTTGCGGAGTCGTCGGCGGAGGCATCTGCGCCGCCGCCGC
CGCCGCCGTTGCTGCTCTTGCCCGGGAAAAAGAAGGCGCCGGCGGCGGCG
CCGGCGGCGGTGGGCGTGACGGCGACGCTGCCCCCGAAGCTGCTGCCTTG
GCCGAGGGAGCTCGTCCTCTGGTACGGCCGCGTGGCGCTAGTCGTGGCGC
CGGGCCAGCCTTGCACGACATTGTTGCCGGGGGCGAAAG GTACGCGTGTG
TTTTTTTTGTTTTTCTCCTCCCATTATTGGCTTATTTTTTTGTCGTCTGC
CCCACTCTGACCCCATCCTCCACTTCGACTAGCTAGACGACTCAACCAGG
GTTACACGCGTGGTATGTGGCAGCTGCAGTGGTGGTGAAAAGGTATGTTT
CGTTTGTGGTGGGCTCGCCGCGGGGGGTTTTGAGTCGCGGGGGGGAGGGA
GGGAGGGGGCGGGTTGCGTGCGCACTCTGTATGCGATCTCTCTCTCTCTC
TCTCTCTGTGCCTCTCGGTGTGTTTTTGTGGCATCAGGCTTTTTGTTTCT
TTGCGTACGCTCTCACCCCCTTATGGGCGTTTTGTGTTCTGTGTTTTGTG
CTTGCTGGTGGTGGCTGGTTTTGCTTGGTCAGCAGGTCGGGAGCGGGGGG
AGGGAAGCACGGCGACTCGGCAACGAGTTGTCGGAGGCACGTGCGTGCGT
GCGATGGGGCGGGGCTGTTTTATTTTTCCTTTCTCCCTCTCTCCCTCTCT
CTCTCTCTCTGATGCCGCCCTTCAGGTGTGCCCCGCGCTGTGCGTGACTC
CGACCGGGGGCGGGGGCACAGTGGCGGGATTGGTTGGTGCAGGCGGTTCT
CGTTCTCGCTCTCCGCTCGCCCCCTTCCGGAATTTTGTGTTTACCGTGCA
CCTGTCTGCCCTGTACCTCTCTGTGTATCCCGTAGATGCCCCAAGCTCGC
GGCCGGCGGTGGCGGCGGCGGCGGCGGCGCACTGGGTACTTCTCACAGAT
GCCGCTCTGTATATCATCGAAACGGGGGTAGCCGGGGCTGCGGCAGGGGC
AG GTGCGTCCCGCTGTTTTTTTTTTTTTTTTTTTTATTTGTTGTAGCCCT
TGCACAAAAAAAACGTCGGTGTTGTTGGTTTGTGGCGGAAAAATAATGTC
TGAGGGCGGGCGCTGGTGGACGCCTCTATGGAGCAGTAGTGCACGAAAAT
ATTGCGACCTCGTGAGTTTGGTTACGCGTGCGTTCTCACCGCGACCAACC
AACCCCTGGGAAGCTTTGATGTAAATATTCTTGAGGTTGCGCTTGTGTTG
TTGCTGTTGTTGTTGTCTTCACATTCAGAAAACGTTACGATCTCTCTATG
TATACATTACCTCCATGATGAGTCCGTACTAATCCAACACTGACGCAGGT
CGATTCCCGTGTTGGTTTGAAAAAACGAACGCGGTCGGGGCGGTACCTCT
TCCTACGCAGGGCCGGGACGGTGGGAACCACAGGATCGCTGTCCAGCAGG
GGAGAGATTTGTTTTTGTGCCAACATGTATATCGCTGCCTGCCTTGAGCA
CAGGCCGGCCGCTCTTGGACCCCCCCCGCGCCTCTGCTATGTACAATAAA
CAATAAACTGTGAGACAAGTCAGGGTGCCGTCCGTCTACCCCCCCCTGCT
CTGGTTGTATCTACAAACATAGGGTTTATTGTTATCACACGCATCCAGGA
TCGTCAAGGCAAACTTGCTCCTCTTTATCACAACGCGACACACACACACA
CACACACGCACGCACGCGGCACACCCCTGCTCGCGCAGAAAAGCCCTCCA
CTGGAAACAAACGGAAAAACTTCGATCTGCTCATTCGAGCTCGCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCAACACCCCACAACAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATANNNNCCCCCC
CCGCCGCAGAAAACCCCCCCCCAGAAAAAAAAAAAAAAAAATTCTATCGG
CGCGGCCGTGCCCCCCCCCCCCCCCCCCCCCCCCCGTGAAAAACACGAAA
CCAAATAAAAATATAAATAAAAATAAAAATAAAAACAATGAAATGACAAA
ATGAAACTAAACGAAGCAAAACTCCATATGTATTGCTAAAACACACAAAA
ACAACAAAAAACAATGAAAACGAGCAGGGTCGAACAAGAGCAGCGACAGC
CTCTGCCGTCTCGAGCGGCATCGCGTGTGGAGCCTGAGCCTGCCGCTGGA
GACCCGCGCGCTGCCCAATGGCGACGAGGTGGCGGTCCGG AG back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5720:4106..6397+
>mRNA_L-elsbetiae_contig5720.14113.1 ID=mRNA_L-elsbetiae_contig5720.14113.1|Name=mRNA_L-elsbetiae_contig5720.14113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig5720:4106..6397+ (Laminarionema elsbetiae ELsaHSoW15) AGAGTCCAGGGTTGCGGAGTCGTCGGCGGAGGCATCTGCGCCGCCGCCGC CGCCGCCGTTGCTGCTCTTGCCCGGGAAAAAGAAGGCGCCGGCGGCGGCG CCGGCGGCGGTGGGCGTGACGGCGACGCTGCCCCCGAAGCTGCTGCCTTG GCCGAGGGAGCTCGTCCTCTGGTACGGCCGCGTGGCGCTAGTCGTGGCGC CGGGCCAGCCTTGCACGACATTGTTGCCGGGGGCGAAAGAGAGTCCAGGG TTGCGGAGTCGTCGGCGGAGGCATCTGCGCCGCCGCCGCCGCCGCCGTTG CTGCTCTTGCCCGGGAAAAAGAAGGCGCCGGCGGCGGCGCCGGCGGCGGT GGGCGTGACGGCGACGCTGCCCCCGAAGCTGCTGCCTTGGCCGAGGGAGC TCGTCCTCTGGTACGGCCGCGTGGCGCTAGTCGTGGCGCCGGGCCAGCCT TGCACGACATTGTTGCCGGGGGCGAAAGCTCGCGGCCGGCGGTGGCGGCG GCGGCGGCGGCGCACTGGGTACTTCTCACAGATGCCGCTCTGTATATCAT CGAAACGGGGGTAGCCGGGGCTGCGGCAGGGGCAGCTCGCGGCCGGCGGT GGCGGCGGCGGCGGCGGCGCACTGGGTACTTCTCACAGATGCCGCTCTGT ATATCATCGAAACGGGGGTAGCCGGGGCTGCGGCAGGGGCAGGGTCGAAC AAGAGCAGCGACAGCCTCTGCCGTCTCGAGCGGCATCGCGTGTGGAGCCT GAGCCTGCCGCTGGAGACCCGCGCGCTGCCCAATGGCGACGAGGTGGCGG TCCGGGGTCGAACAAGAGCAGCGACAGCCTCTGCCGTCTCGAGCGGCATC GCGTGTGGAGCCTGAGCCTGCCGCTGGAGACCCGCGCGCTGCCCAATGGC GACGAGGTGGCGGTCCGG back to top