prot_L-elsbetiae_contig5720.14113.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5720.14113.1
Unique Nameprot_L-elsbetiae_contig5720.14113.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length153
Homology
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BLAST of mRNA_L-elsbetiae_contig5720.14113.1 vs. uniprot
Match: A0A6H5K450_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K450_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.870e-17
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 0 
Query:   86 AAAAAAHWVLLTDAALYIIET-GVAGAAAGAG-SNKSSDSLCRLERHRVWSLSLPLETRALPNGDEVAVR 153
            A A AAHW+LLTD A+Y++ET G+  AA G   + + ++ LC L+RHR+WSLSLPLETRALPNGDEVAVR
Sbjct:  808 APATAAHWILLTDGAMYVVETRGIGAAAEGERPAARETNGLCCLKRHRLWSLSLPLETRALPNGDEVAVR 877
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BLAST of mRNA_L-elsbetiae_contig5720.14113.1 vs. uniprot
Match: D8LKM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM4_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 6.140e-17
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 0 
Query:   86 AAAAAAHWVLLTDAALYIIETGVAGAAAGAG--SNKSSDSLCRLERHRVWSLSLPLETRALPNGDEVAVR 153
            A A AAHW+LLTD A+Y++ET   GAAA     + + ++ LC L+RHR+WSLSLPLETRALPNGDE+AVR
Sbjct:  139 APATAAHWILLTDGAMYVVETRGLGAAAEGERPAARETNGLCCLKRHRLWSLSLPLETRALPNGDEMAVR 208
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5720.14113.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K450_9PHAE3.870e-1764.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKM4_ECTSI6.140e-1762.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020467Potassium channel, voltage dependent, Kv1.4PRINTSPR01511KV14CHANNELcoord: 14..24
score: 79.22
coord: 27..36
score: 55.71
NoneNo IPR availableTMHMMTMhelixcoord: 7..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5720contigL-elsbetiae_contig5720:4106..6395 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5720.14113.1mRNA_L-elsbetiae_contig5720.14113.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5720 4106..6397 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5720.14113.1 ID=prot_L-elsbetiae_contig5720.14113.1|Name=mRNA_L-elsbetiae_contig5720.14113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
RVQGCGVVGGGICAAAAAAVAALAREKEGAGGGAGGGGRDGDAAPEAAAL
AEGARPLVRPRGASRGAGPALHDIVAGGESSRPAVAAAAAAHWVLLTDAA
LYIIETGVAGAAAGAGSNKSSDSLCRLERHRVWSLSLPLETRALPNGDEV
AVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020467K_chnl_volt-dep_Kv1.4