mRNA_L-elsbetiae_contig5720.14113.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5720.14113.1
Unique NamemRNA_L-elsbetiae_contig5720.14113.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5720.14113.1 vs. uniprot
Match: A0A6H5K450_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K450_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.870e-17
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:  256 AAAAAAHWVLLTDAALYIIET-GVAGAAAGAG-SNKSSDSLCRLERHRVWSLSLPLETRALPNGDEVAVR 459
            A A AAHW+LLTD A+Y++ET G+  AA G   + + ++ LC L+RHR+WSLSLPLETRALPNGDEVAVR
Sbjct:  808 APATAAHWILLTDGAMYVVETRGIGAAAEGERPAARETNGLCCLKRHRLWSLSLPLETRALPNGDEVAVR 877
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BLAST of mRNA_L-elsbetiae_contig5720.14113.1 vs. uniprot
Match: D8LKM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM4_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 6.140e-17
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:  256 AAAAAAHWVLLTDAALYIIETGVAGAAAGAG--SNKSSDSLCRLERHRVWSLSLPLETRALPNGDEVAVR 459
            A A AAHW+LLTD A+Y++ET   GAAA     + + ++ LC L+RHR+WSLSLPLETRALPNGDE+AVR
Sbjct:  139 APATAAHWILLTDGAMYVVETRGLGAAAEGERPAARETNGLCCLKRHRLWSLSLPLETRALPNGDEMAVR 208
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5720.14113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K450_9PHAE3.870e-1764.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKM4_ECTSI6.140e-1762.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5720contigL-elsbetiae_contig5720:4106..6397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size463
Cds size459
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5720.14113.1prot_L-elsbetiae_contig5720.14113.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5720 4106..6395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816611.9160123-CDS-L-elsbetiae_contig5720:4105..43441622816611.9160123-CDS-L-elsbetiae_contig5720:4105..4344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5720 4106..4344 +
1691683684.1841006-CDS-L-elsbetiae_contig5720:4105..43441691683684.1841006-CDS-L-elsbetiae_contig5720:4105..4344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5720 4106..4344 +
1622816611.9293644-CDS-L-elsbetiae_contig5720:5050..51571622816611.9293644-CDS-L-elsbetiae_contig5720:5050..5157Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5720 5051..5157 +
1691683684.195131-CDS-L-elsbetiae_contig5720:5050..51571691683684.195131-CDS-L-elsbetiae_contig5720:5050..5157Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5720 5051..5157 +
1622816611.9398322-CDS-L-elsbetiae_contig5720:6282..63951622816611.9398322-CDS-L-elsbetiae_contig5720:6282..6395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5720 6283..6395 +
1691683684.2059894-CDS-L-elsbetiae_contig5720:6282..63951691683684.2059894-CDS-L-elsbetiae_contig5720:6282..6395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5720 6283..6395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5720.14113.1

>prot_L-elsbetiae_contig5720.14113.1 ID=prot_L-elsbetiae_contig5720.14113.1|Name=mRNA_L-elsbetiae_contig5720.14113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
RVQGCGVVGGGICAAAAAAVAALAREKEGAGGGAGGGGRDGDAAPEAAAL
AEGARPLVRPRGASRGAGPALHDIVAGGESSRPAVAAAAAAHWVLLTDAA
LYIIETGVAGAAAGAGSNKSSDSLCRLERHRVWSLSLPLETRALPNGDEV
AVR
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mRNA from alignment at L-elsbetiae_contig5720:4106..6397+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5720.14113.1 ID=mRNA_L-elsbetiae_contig5720.14113.1|Name=mRNA_L-elsbetiae_contig5720.14113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2292bp|location=Sequence derived from alignment at L-elsbetiae_contig5720:4106..6397+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGTCCAGGGTTGCGGAGTCGTCGGCGGAGGCATCTGCGCCGCCGCCGC
CGCCGCCGTTGCTGCTCTTGCCCGGGAAAAAGAAGGCGCCGGCGGCGGCG
CCGGCGGCGGTGGGCGTGACGGCGACGCTGCCCCCGAAGCTGCTGCCTTG
GCCGAGGGAGCTCGTCCTCTGGTACGGCCGCGTGGCGCTAGTCGTGGCGC
CGGGCCAGCCTTGCACGACATTGTTGCCGGGGGCGAAAGGTACGCGTGTG
TTTTTTTTGTTTTTCTCCTCCCATTATTGGCTTATTTTTTTGTCGTCTGC
CCCACTCTGACCCCATCCTCCACTTCGACTAGCTAGACGACTCAACCAGG
GTTACACGCGTGGTATGTGGCAGCTGCAGTGGTGGTGAAAAGGTATGTTT
CGTTTGTGGTGGGCTCGCCGCGGGGGGTTTTGAGTCGCGGGGGGGAGGGA
GGGAGGGGGCGGGTTGCGTGCGCACTCTGTATGCGATCTCTCTCTCTCTC
TCTCTCTGTGCCTCTCGGTGTGTTTTTGTGGCATCAGGCTTTTTGTTTCT
TTGCGTACGCTCTCACCCCCTTATGGGCGTTTTGTGTTCTGTGTTTTGTG
CTTGCTGGTGGTGGCTGGTTTTGCTTGGTCAGCAGGTCGGGAGCGGGGGG
AGGGAAGCACGGCGACTCGGCAACGAGTTGTCGGAGGCACGTGCGTGCGT
GCGATGGGGCGGGGCTGTTTTATTTTTCCTTTCTCCCTCTCTCCCTCTCT
CTCTCTCTCTGATGCCGCCCTTCAGGTGTGCCCCGCGCTGTGCGTGACTC
CGACCGGGGGCGGGGGCACAGTGGCGGGATTGGTTGGTGCAGGCGGTTCT
CGTTCTCGCTCTCCGCTCGCCCCCTTCCGGAATTTTGTGTTTACCGTGCA
CCTGTCTGCCCTGTACCTCTCTGTGTATCCCGTAGATGCCCCAAGCTCGC
GGCCGGCGGTGGCGGCGGCGGCGGCGGCGCACTGGGTACTTCTCACAGAT
GCCGCTCTGTATATCATCGAAACGGGGGTAGCCGGGGCTGCGGCAGGGGC
AGGTGCGTCCCGCTGTTTTTTTTTTTTTTTTTTTTATTTGTTGTAGCCCT
TGCACAAAAAAAACGTCGGTGTTGTTGGTTTGTGGCGGAAAAATAATGTC
TGAGGGCGGGCGCTGGTGGACGCCTCTATGGAGCAGTAGTGCACGAAAAT
ATTGCGACCTCGTGAGTTTGGTTACGCGTGCGTTCTCACCGCGACCAACC
AACCCCTGGGAAGCTTTGATGTAAATATTCTTGAGGTTGCGCTTGTGTTG
TTGCTGTTGTTGTTGTCTTCACATTCAGAAAACGTTACGATCTCTCTATG
TATACATTACCTCCATGATGAGTCCGTACTAATCCAACACTGACGCAGGT
CGATTCCCGTGTTGGTTTGAAAAAACGAACGCGGTCGGGGCGGTACCTCT
TCCTACGCAGGGCCGGGACGGTGGGAACCACAGGATCGCTGTCCAGCAGG
GGAGAGATTTGTTTTTGTGCCAACATGTATATCGCTGCCTGCCTTGAGCA
CAGGCCGGCCGCTCTTGGACCCCCCCCGCGCCTCTGCTATGTACAATAAA
CAATAAACTGTGAGACAAGTCAGGGTGCCGTCCGTCTACCCCCCCCTGCT
CTGGTTGTATCTACAAACATAGGGTTTATTGTTATCACACGCATCCAGGA
TCGTCAAGGCAAACTTGCTCCTCTTTATCACAACGCGACACACACACACA
CACACACGCACGCACGCGGCACACCCCTGCTCGCGCAGAAAAGCCCTCCA
CTGGAAACAAACGGAAAAACTTCGATCTGCTCATTCGAGCTCGCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCAACACCCCACAACAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATANNNNCCCCCC
CCGCCGCAGAAAACCCCCCCCCAGAAAAAAAAAAAAAAAAATTCTATCGG
CGCGGCCGTGCCCCCCCCCCCCCCCCCCCCCCCCCGTGAAAAACACGAAA
CCAAATAAAAATATAAATAAAAATAAAAATAAAAACAATGAAATGACAAA
ATGAAACTAAACGAAGCAAAACTCCATATGTATTGCTAAAACACACAAAA
ACAACAAAAAACAATGAAAACGAGCAGGGTCGAACAAGAGCAGCGACAGC
CTCTGCCGTCTCGAGCGGCATCGCGTGTGGAGCCTGAGCCTGCCGCTGGA
GACCCGCGCGCTGCCCAATGGCGACGAGGTGGCGGTCCGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5720:4106..6397+

>mRNA_L-elsbetiae_contig5720.14113.1 ID=mRNA_L-elsbetiae_contig5720.14113.1|Name=mRNA_L-elsbetiae_contig5720.14113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig5720:4106..6397+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGTCCAGGGTTGCGGAGTCGTCGGCGGAGGCATCTGCGCCGCCGCCGC
CGCCGCCGTTGCTGCTCTTGCCCGGGAAAAAGAAGGCGCCGGCGGCGGCG
CCGGCGGCGGTGGGCGTGACGGCGACGCTGCCCCCGAAGCTGCTGCCTTG
GCCGAGGGAGCTCGTCCTCTGGTACGGCCGCGTGGCGCTAGTCGTGGCGC
CGGGCCAGCCTTGCACGACATTGTTGCCGGGGGCGAAAGAGAGTCCAGGG
TTGCGGAGTCGTCGGCGGAGGCATCTGCGCCGCCGCCGCCGCCGCCGTTG
CTGCTCTTGCCCGGGAAAAAGAAGGCGCCGGCGGCGGCGCCGGCGGCGGT
GGGCGTGACGGCGACGCTGCCCCCGAAGCTGCTGCCTTGGCCGAGGGAGC
TCGTCCTCTGGTACGGCCGCGTGGCGCTAGTCGTGGCGCCGGGCCAGCCT
TGCACGACATTGTTGCCGGGGGCGAAAGCTCGCGGCCGGCGGTGGCGGCG
GCGGCGGCGGCGCACTGGGTACTTCTCACAGATGCCGCTCTGTATATCAT
CGAAACGGGGGTAGCCGGGGCTGCGGCAGGGGCAGCTCGCGGCCGGCGGT
GGCGGCGGCGGCGGCGGCGCACTGGGTACTTCTCACAGATGCCGCTCTGT
ATATCATCGAAACGGGGGTAGCCGGGGCTGCGGCAGGGGCAGGGTCGAAC
AAGAGCAGCGACAGCCTCTGCCGTCTCGAGCGGCATCGCGTGTGGAGCCT
GAGCCTGCCGCTGGAGACCCGCGCGCTGCCCAATGGCGACGAGGTGGCGG
TCCGGGGTCGAACAAGAGCAGCGACAGCCTCTGCCGTCTCGAGCGGCATC
GCGTGTGGAGCCTGAGCCTGCCGCTGGAGACCCGCGCGCTGCCCAATGGC
GACGAGGTGGCGGTCCGG
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