mRNA_L-elsbetiae_contig5710.14099.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5710.14099.1
Unique NamemRNA_L-elsbetiae_contig5710.14099.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5710.14099.1 vs. uniprot
Match: D8LE68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE68_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 1.040e-45
Identity = 85/116 (73.28%), Postives = 93/116 (80.17%), Query Frame = 1 
Query:   13 MLSLRPVGTLEG--EGFRPPLPLPHPNEASVVLVGGERASEHDSFNGACNARIVTPPPGGDVTGSGSAT------AVAAAADGGRLLATMVVGEDGKALLAQFYQKHGCIAISDVS 336
            MLS RPVGTL     GF+ PLPL HP EASVVLVGG RASEHDSFNGAC+A+IVTP PGG+++GS +        A  AAADGGRLLATMVVGE GKALLAQFYQKHGCIAISDV+
Sbjct:    1 MLSFRPVGTLPAGSSGFQSPLPLAHPTEASVVLVGGSRASEHDSFNGACSAKIVTPTPGGEMSGSNNQANQSWGGAAGAAADGGRLLATMVVGEGGKALLAQFYQKHGCIAISDVT 116
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5710.14099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE68_ECTSI1.040e-4573.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5710contigL-elsbetiae_contig5710:8045..9860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size338
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5710.14099.1prot_L-elsbetiae_contig5710.14099.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5710 8045..9848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816610.1151464-CDS-L-elsbetiae_contig5710:8044..81481622816610.1151464-CDS-L-elsbetiae_contig5710:8044..8148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5710 8045..8148 -
1691683682.9084492-CDS-L-elsbetiae_contig5710:8044..81481691683682.9084492-CDS-L-elsbetiae_contig5710:8044..8148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5710 8045..8148 -
1622816610.1251512-CDS-L-elsbetiae_contig5710:8678..88261622816610.1251512-CDS-L-elsbetiae_contig5710:8678..8826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5710 8679..8826 -
1691683682.9215834-CDS-L-elsbetiae_contig5710:8678..88261691683682.9215834-CDS-L-elsbetiae_contig5710:8678..8826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5710 8679..8826 -
1622816610.1365643-CDS-L-elsbetiae_contig5710:9776..98481622816610.1365643-CDS-L-elsbetiae_contig5710:9776..9848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5710 9777..9848 -
1691683682.9311733-CDS-L-elsbetiae_contig5710:9776..98481691683682.9311733-CDS-L-elsbetiae_contig5710:9776..9848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5710 9777..9848 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816610.146379-UTR-L-elsbetiae_contig5710:9848..98601622816610.146379-UTR-L-elsbetiae_contig5710:9848..9860Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5710 9849..9860 -
1691683682.9402423-UTR-L-elsbetiae_contig5710:9848..98601691683682.9402423-UTR-L-elsbetiae_contig5710:9848..9860Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5710 9849..9860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5710.14099.1

>prot_L-elsbetiae_contig5710.14099.1 ID=prot_L-elsbetiae_contig5710.14099.1|Name=mRNA_L-elsbetiae_contig5710.14099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MLSLRPVGTLEGEGFRPPLPLPHPNEASVVLVGGERASEHDSFNGACNAR
IVTPPPGGDVTGSGSATAVAAAADGGRLLATMVVGEDGKALLAQFYQKHG
CIAISDVS
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mRNA from alignment at L-elsbetiae_contig5710:8045..9860-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5710.14099.1 ID=mRNA_L-elsbetiae_contig5710.14099.1|Name=mRNA_L-elsbetiae_contig5710.14099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1816bp|location=Sequence derived from alignment at L-elsbetiae_contig5710:8045..9860- (Laminarionema elsbetiae ELsaHSoW15)
CACGTGCTTGCAATGCTCTCGCTACGGCCCGTCGGCACCTTGGAGGGGGA
AGGATTTCGCCCTCCATTACCTCTTCCTCACCCGGTGAGGCGTTGTTGGT
GTGCCCACACGCGACGCTTGACTCTAAACCGTGTCTGATGTACAAACAAC
AGCGGGTTGCCAGATGTGTGTTTCAAACATACATATGTCTCCGCCCTCTC
ATGTCTTTTTCAGGTCAGGTAAGGGCTTGCCGCAATTATGATCATAGTGA
TGGGCGGCCAGGGTTGCTGGTGCTGCCGACGTCAAACCCGGTAGTAGCTT
GTTCAATACATACATATACAAGGAAAGGACATTGCCCCGCACTTTCGGGA
CAGAACACCGCGTCGTGTTCGATCTTTTGTTTCGCAACGGCACCCACCGC
CCCCCCAGTATCCCACCCCATGAAGGGCACCTATAGCTGCAGGATTCTCT
GTTCTAGTTGTGGGGGCCTGTTAACAAGACGAAATCAAGCGTTTTGCAGA
TTTAGGTGAATTCATCGGATTACCAATCGCACCGCAGGGTGGCCGCACTG
ACTCCTTCTGGGAGCTGGGAGCTCGCTCGCGTTCTCCGTCTGCACAGCAG
TCAGTCAATCCCCTGCGAGAGATCCGGAGGGAAGCACACACACGCGCGCG
CACGATCGCAACACAGTATCCCATCCCCCAAACGCCGATGGAAAACATAA
ACATTCGTGATACACACACGGAATAACCGATCTCTGATAGATACACCAAA
CAAAGGTTCTCTGATAAATAGTACCGGTAGTACTGAGCGTTCTCATCAAG
AGCGTATGATACGCATCGTACCACGCACGCACTGCATGTCGCACATAGAT
ACCGACCGCCGTATATGCATACAAAGATATGTAGGTACATACGTACGCAG
AACATCAATGTACTTCACTGAAAAACGAGGGTTCTGGCACACCGTGCAAC
CCTTTTTTCTGTTCCAACATCTCGAACCCTGAACTGAACCACCTGAGCAC
CACGTCGTGGCGAAAAACAAAACACAAAAAACAGAACGAGGCGTCGGTCG
TGCTTGTCGGAGGGGAGCGCGCGAGCGAGCACGACAGTTTCAACGGCGCG
TGCAATGCCAGGATTGTCACACCACCGCCGGGAGGGGACGTCACCGGGAG
CGGCAGTGCTACCGCTGTGGCTGCAGCAGCAGGTGCGAAAAAACGCAAAA
AAACAAAACAAAACAAAACGCGCGCGTGGCCTCGCTCTCTCACTTCTTTC
CCGACACGCTTCTGTTTTTTTCCCGCGTGTGCTTGCATGCAGCGAATACA
TGACTGCCTCCGAAAATCTGGCAAGGGGGGTATTGGATCTCGAGGAAAAG
AGTTTGCGCAGTCAGCGAGTGGCCTACGGGGGTATTCTGCTGCTGTTGAA
CCGGTGTGCTGCATGCTGACTGTGATTCTACATGTAACCGTCGACCCCTG
GCTTGAGGGGGTCGCAGAGCGGGTGGCAGGGGCTCTAAGATTCCGGGAAA
GTTCCAACAGCGCGGGAATGCTGAAATGACAACTGCATACCTACTCGTGT
GGGTGTGTGGTGGGCGATCGGTTGTTCTGGTCTTGTCCTTGTTGGAATTT
GTTCGCGTCGCTGATCGTCTTGGTCTCGGTTTTCTTGGTCTGTTTTTTTT
GTTGTTTTCTTTCGGCTCGCTTATGTACCCTCTCTTCTTCTTGCTCTTTT
CTTGCTCATCAGATGGGGGCCGGTTGCTTGCGACGATGGTTGTTGGCGAG
GACGGAAAGGCGCTGCTCGCTCAGTTCTATCAGAAACACGGCTGCATAGC
CATCTCCGACGTTTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5710:8045..9860-

>mRNA_L-elsbetiae_contig5710.14099.1 ID=mRNA_L-elsbetiae_contig5710.14099.1|Name=mRNA_L-elsbetiae_contig5710.14099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig5710:8045..9860- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCTCGCTACGGCCCGTCGGCACCTTGGAGGGGGAAGGATTTCGCCC
TCCATTACCTCTTCCTCACCCGATGCTCTCGCTACGGCCCGTCGGCACCT
TGGAGGGGGAAGGATTTCGCCCTCCATTACCTCTTCCTCACCCGAACGAG
GCGTCGGTCGTGCTTGTCGGAGGGGAGCGCGCGAGCGAGCACGACAGTTT
CAACGGCGCGTGCAATGCCAGGATTGTCACACCACCGCCGGGAGGGGACG
TCACCGGGAGCGGCAGTGCTACCGCTGTGGCTGCAGCAGCAGAACGAGGC
GTCGGTCGTGCTTGTCGGAGGGGAGCGCGCGAGCGAGCACGACAGTTTCA
ACGGCGCGTGCAATGCCAGGATTGTCACACCACCGCCGGGAGGGGACGTC
ACCGGGAGCGGCAGTGCTACCGCTGTGGCTGCAGCAGCAGATGGGGGCCG
GTTGCTTGCGACGATGGTTGTTGGCGAGGACGGAAAGGCGCTGCTCGCTC
AGTTCTATCAGAAACACGGCTGCATAGCCATCTCCGACGTTTCCATGGGG
GCCGGTTGCTTGCGACGATGGTTGTTGGCGAGGACGGAAAGGCGCTGCTC
GCTCAGTTCTATCAGAAACACGGCTGCATAGCCATCTCCGACGTTTCC
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