mRNA_L-elsbetiae_contig570.14085.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig570.14085.1 vs. uniprot
Match: A0A6H5K5X6_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X6_9PHAE) HSP 1 Score: 309 bits (791), Expect = 8.530e-88 Identity = 187/457 (40.92%), Postives = 217/457 (47.48%), Query Frame = 2 Query: 2036 FCVFQAALSEQLNSDGNAETHGRTMESAERLYDKLIES--DRDGSGGISIEEYVAFSEQEGVPRNVAETMFFQADVHGRGQISFEEWTAMMVGRVGRAEGSFNCGGHHGLTQYVAVCNGLACDFCHAPISAGDLAKGCRRCDCDACASCSGLXXXXXXXXXXXXXXXX--------------------------------------------------------------GVAPTA---------------------------------------------------------------------------SAASLWQSHRGAAAVLDVERPGAFDCRWQHGLVPFTVTVGPSVACDWCGHSVPPGQLCFSCRVCDADGCADCAAASL------GAPDGNASGLTCPGRHGLAQARAAGGCVCDFCRAPVAVGAKVYSCRMCGVDACVGCVWKDHRR 2971 F F ALS+QLN+DG +T+GR M+SAE LY ++ D DGSGGIS+EEYV F +EG+PR+VAET FFQAD+ G GQISFEEWTAMM+GRVGR E SFNCGGHHGL QYVAV NG+ACDFC API AG AKGCRRCDCDACA+CSGL VA A +AA L ++ A P +FDCR +HGL +TV G VACDWCG S+P G CR CD DGC DCAA SL G+ G+A GLTCPG HGL A A GCVCD C V G+KV+SCR+C +DACV C+W+DHRR Sbjct: 112 FAQFSEALSKQLNADGKTQTNGRAMDSAEHLYTMFTQACCDSDGSGGISVEEYVYFCGREGIPRSVAETTFFQADIDGNGQISFEEWTAMMIGRVGRDEDSFNCGGHHGLVQYVAVFNGMACDFCGAPIQAGFFAKGCRRCDCDACATCSGLPTTPAPPPQLPPRDGLESGSASAPGQTKKKAKKKGKGGTKETVGTKKVKKVVATGEGKTKVKKQVAASGXXXXAKVNKXVAAPAXEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGTKVKKKATPAPRPPTEAPPPQQQPFQSRPPARVHVAAAPLPRASAWEVATTVQTWPDSFDCRLRHGLTLYTVPFGLPVACDWCGASLPLGYPAVGCRACDVDGCLDCAARSLMPSAGDGSVSGSALGLTCPGLHGLTMAAAGPGCVCDLCGCGVGAGSKVFSCRLCDMDACVSCIWRDHRR 568
BLAST of mRNA_L-elsbetiae_contig570.14085.1 vs. uniprot
Match: D7G0S5_ECTSI (Calcium dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S5_ECTSI) HSP 1 Score: 195 bits (495), Expect = 4.000e-48 Identity = 97/150 (64.67%), Postives = 108/150 (72.00%), Query Frame = 2 Query: 2036 FCVFQAALSEQLNSDGNAETHGRTMESAERLYDKLIESDRDGSGGISIEEYVAFSEQEGVPRNVAETMFFQADVHGRGQISFEEWTAMMVGRVGRAEGSFNCGGHHGLTQYVAVCNGLACDFCHAPISAGDLAKGCRRCDCDACASCSGL 2485 F F AALS+QLN DG +T+GRTM+SAE LY E D DGSGGISIEEYV F +EGVPR+VAET WTAMM+GRVGR + SFNCGG+HGL QYVAV NG+ACDFC PI AG AKGCRRCDCDACA+CSGL Sbjct: 107 FAQFSAALSKQLNGDGKTQTNGRTMDSAEHLYTMFTECDSDGSGGISIEEYVYFCSREGVPRSVAETTXXXXXXXXXXXXXXXXWTAMMMGRVGRDKDSFNCGGNHGLVQYVAVYNGMACDFCGTPIQAGFFAKGCRRCDCDACATCSGL 256 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig570.14085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig570.14085.1 >prot_L-elsbetiae_contig570.14085.1 ID=prot_L-elsbetiae_contig570.14085.1|Name=mRNA_L-elsbetiae_contig570.14085.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=381bp MESAERLYDKLIESDRDGSGGISIEEYVAFSEQEGVPRNVAETMFFQADVback to top mRNA from alignment at L-elsbetiae_contig570:19963..27947+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig570.14085.1 ID=mRNA_L-elsbetiae_contig570.14085.1|Name=mRNA_L-elsbetiae_contig570.14085.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7985bp|location=Sequence derived from alignment at L-elsbetiae_contig570:19963..27947+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig570:19963..27947+ >mRNA_L-elsbetiae_contig570.14085.1 ID=mRNA_L-elsbetiae_contig570.14085.1|Name=mRNA_L-elsbetiae_contig570.14085.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2286bp|location=Sequence derived from alignment at L-elsbetiae_contig570:19963..27947+ (Laminarionema elsbetiae ELsaHSoW15)back to top |