mRNA_L-elsbetiae_contig5650.13996.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5650.13996.1
Unique NamemRNA_L-elsbetiae_contig5650.13996.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5650.13996.1 vs. uniprot
Match: D8LDF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF5_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 7.820e-28
Identity = 73/120 (60.83%), Postives = 85/120 (70.83%), Query Frame = 1 
Query:    1 QDGGAARTATTTASAAADTLMSLAKRPAAKLALASFLTSAVSAGEVSLSSAMAGTGGSGSRGWRALVAHAFAELELLPLKSYSEEFSSGLAPVNTLRGLWRTRETRSDGSVLPQEGGRLG 360
            +D  A  T TT     A+T+ SLA++  A +ALA+ LT AV  GEV++S  +AG GG       A    AFAELE LPLKSYSEEFSSGLAPVNT+RGLWRTRETR+DGS LPQE GRLG
Sbjct:  102 RDSNAVTTTTT-----AETVASLARQALATVALAAVLTPAVFIGEVTVSPLLAGKGGV------APPTAAFAELEPLPLKSYSEEFSSGLAPVNTVRGLWRTRETRNDGSALPQEAGRLG 210
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5650.13996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDF5_ECTSI7.820e-2860.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5650contigL-elsbetiae_contig5650:4986..5872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816601.369408-CDS-L-elsbetiae_contig5650:4985..52771622816601.369408-CDS-L-elsbetiae_contig5650:4985..5277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5650 4986..5277 +
1691683676.8821006-CDS-L-elsbetiae_contig5650:4985..52771691683676.8821006-CDS-L-elsbetiae_contig5650:4985..5277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5650 4986..5277 +
1622816601.3801792-CDS-L-elsbetiae_contig5650:5804..58721622816601.3801792-CDS-L-elsbetiae_contig5650:5804..5872Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5650 5805..5872 +
1691683676.89275-CDS-L-elsbetiae_contig5650:5804..58721691683676.89275-CDS-L-elsbetiae_contig5650:5804..5872Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5650 5805..5872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5650.13996.1prot_L-elsbetiae_contig5650.13996.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5650 4986..5872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5650.13996.1

>prot_L-elsbetiae_contig5650.13996.1 ID=prot_L-elsbetiae_contig5650.13996.1|Name=mRNA_L-elsbetiae_contig5650.13996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
QDGGAARTATTTASAAADTLMSLAKRPAAKLALASFLTSAVSAGEVSLSS
AMAGTGGSGSRGWRALVAHAFAELELLPLKSYSEEFSSGLAPVNTLRGLW
RTRETRSDGSVLPQEGGRLG
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mRNA from alignment at L-elsbetiae_contig5650:4986..5872+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5650.13996.1 ID=mRNA_L-elsbetiae_contig5650.13996.1|Name=mRNA_L-elsbetiae_contig5650.13996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=887bp|location=Sequence derived from alignment at L-elsbetiae_contig5650:4986..5872+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGACGGCGGTGCCGCACGCACTGCCACCACCACTGCTTCTGCTGCCGC
TGACACCTTGATGTCTCTGGCAAAGCGACCGGCAGCGAAGCTAGCACTAG
CATCGTTTCTCACTTCAGCAGTTTCTGCCGGCGAGGTGTCGCTTTCGTCG
GCGATGGCGGGCACCGGCGGGAGCGGGAGCAGAGGCTGGAGAGCGCTCGT
AGCGCATGCGTTCGCCGAGCTGGAGCTGTTACCGTTGAAGTCGTACTCGG
AAGAGTTCTCCAGCGGGCTCGCACCGGTCAACACCCTGCGCGGTAAGCCA
TCTGGTACGCATCAGCAAGGCAGAACGGAGGAAAAGGCTTCGGACTCTGT
CTTCGCTCCCTCATATGCTGAGCTATCGCTGTTTGCGTCGAGCAGCAGCA
GCTTTGCCTGCTGCACCTGATACATACCGCCGTCACTGCTCTGCCGCTGC
CACCATTTCGTAGGACTCTCGTTTTACAAACTGCAGTACGTCCAGTACCA
TTTTAATTCAATCTCCGTGGGTGTTGGCCGAGGCCACGGCCCCGGTATTG
CTTGCATGAAATGTCCTTTCTTAGGCGTGTCATGCGGGATGAGAAAAACC
CTGGAGACTATGGTGCTCAGGACCAATATACCAGCAGCATGTACCACTAC
CATACCACAGTAGCTCCCCGAATCGATTGCACCCGTACATACGATGGTGT
TTCTAATCGCAGTAGTATCGATGCTAGTTCCTTCGTTGACCGCGGTTATG
TTCCGCGATGATTTTGACAGCTCAAACCACTGCTATACTGTTGCGGCGTA
ACTTGTACGTCACCTAAAGGTTTGTGGCGCACACGCGAGACACGGAGCGA
TGGCTCCGTGCTGCCGCAGGAAGGGGGCAGGCTAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5650:4986..5872+

>mRNA_L-elsbetiae_contig5650.13996.1 ID=mRNA_L-elsbetiae_contig5650.13996.1|Name=mRNA_L-elsbetiae_contig5650.13996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig5650:4986..5872+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGACGGCGGTGCCGCACGCACTGCCACCACCACTGCTTCTGCTGCCGC
TGACACCTTGATGTCTCTGGCAAAGCGACCGGCAGCGAAGCTAGCACTAG
CATCGTTTCTCACTTCAGCAGTTTCTGCCGGCGAGGTGTCGCTTTCGTCG
GCGATGGCGGGCACCGGCGGGAGCGGGAGCAGAGGCTGGAGAGCGCTCGT
AGCGCATGCGTTCGCCGAGCTGGAGCTGTTACCGTTGAAGTCGTACTCGG
AAGAGTTCTCCAGCGGGCTCGCACCGGTCAACACCCTGCGCGCAAGACGG
CGGTGCCGCACGCACTGCCACCACCACTGCTTCTGCTGCCGCTGACACCT
TGATGTCTCTGGCAAAGCGACCGGCAGCGAAGCTAGCACTAGCATCGTTT
CTCACTTCAGCAGTTTCTGCCGGCGAGGTGTCGCTTTCGTCGGCGATGGC
GGGCACCGGCGGGAGCGGGAGCAGAGGCTGGAGAGCGCTCGTAGCGCATG
CGTTCGCCGAGCTGGAGCTGTTACCGTTGAAGTCGTACTCGGAAGAGTTC
TCCAGCGGGCTCGCACCGGTCAACACCCTGCGCGGTTTGTGGCGCACACG
CGAGACACGGAGCGATGGCTCCGTGCTGCCGCAGGAAGGGGGCAGGCTAG
GCGTTTGTGGCGCACACGCGAGACACGGAGCGATGGCTCCGTGCTGCCGC
AGGAAGGGGGCAGGCTAGGC
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