mRNA_L-elsbetiae_contig5649.13988.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5649.13988.1
Unique NamemRNA_L-elsbetiae_contig5649.13988.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5649.13988.1 vs. uniprot
Match: D8LLV8_ECTSI (PI3K/PI4K catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV8_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 3.690e-49
Identity = 85/99 (85.86%), Postives = 89/99 (89.90%), Query Frame = 3 
Query:    3 LARMFAQEQAAIEDLGDMWKRDPKWTEFFLPQYMLFLLYASFAHSPGLQELLLGRCETSVHTAHTIYWFLRAFCLQGARVTPVGVKAIEQMLQEVVSRG 299
            LARMFAQEQAAIE+LGDMW RDPKWT FFLPQY LFLLYASFAHS  LQ+LLL RC +SV TAH +YWFLRAFCLQGARVTPVGV AIEQMLQEVVSRG
Sbjct:  218 LARMFAQEQAAIEELGDMWVRDPKWTGFFLPQYTLFLLYASFAHSSRLQDLLLDRCGSSVQTAHALYWFLRAFCLQGARVTPVGVAAIEQMLQEVVSRG 316
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BLAST of mRNA_L-elsbetiae_contig5649.13988.1 vs. uniprot
Match: A0A6H5JBM1_9PHAE (PI3K/PI4K catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBM1_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 2.400e-48
Identity = 84/99 (84.85%), Postives = 88/99 (88.89%), Query Frame = 3 
Query:    3 LARMFAQEQAAIEDLGDMWKRDPKWTEFFLPQYMLFLLYASFAHSPGLQELLLGRCETSVHTAHTIYWFLRAFCLQGARVTPVGVKAIEQMLQEVVSRG 299
            LARMFAQEQAAIE+LGDMW RDPKWT FFLPQY LFLLYASFAHS  LQ+LLL RC +SV TAH +YWFLRAFCLQGARVTP GV AIEQMLQEVVSRG
Sbjct:  205 LARMFAQEQAAIEELGDMWVRDPKWTGFFLPQYTLFLLYASFAHSSRLQDLLLDRCGSSVQTAHALYWFLRAFCLQGARVTPEGVTAIEQMLQEVVSRG 303
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BLAST of mRNA_L-elsbetiae_contig5649.13988.1 vs. uniprot
Match: A0A7S3USU3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USU3_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 1.200e-16
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 3 
Query:   36 IEDLGDMWKRDPKWTEFFLPQYMLFLLYASFAHSPGLQELLLGRCETSVHTAHTIYWFLRAFCLQGARVTPVGVKAIEQMLQEV 287
            ++D+   + RDP+  EF+L Q +LFLL+ SF  +  L+ LLLGRC  S+H  H ++W LRAF  +GAR+T     AI  +L EV
Sbjct:    6 MDDIDRGFDRDPEGYEFYLTQLVLFLLHGSFRDAQRLEALLLGRCRQSLHFGHQMFWVLRAFGAEGARLTDEAQAAIAALLNEV 89
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BLAST of mRNA_L-elsbetiae_contig5649.13988.1 vs. uniprot
Match: A0A5A8C9G1_CAFRO (PI3K/PI4K catalytic domain-containing protein n=7 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C9G1_CAFRO)

HSP 1 Score: 71.6 bits (174), Expect = 1.930e-12
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 3 
Query:    3 LARMFAQEQAAIEDLGDMWKRDPKWTEFFLPQYMLFLLYA-SFAHSPG-LQELLLGRCETSVHTAHTIYWFLRAFCLQGARVTPV------GVKAIEQMLQEVVSRG 299
            +AR++A E+ A+ +L +  KR P    F+ P  + FLL+    A S G L+  LLG+CETS+H +H +YWFL AF    A  +P+      G+    Q+++ V  +G
Sbjct:  135 IARLYAHEEDAVRELYERHKRSPSMMRFYAPLLVNFLLHGHGEARSSGELEVFLLGKCETSIHFSHRVYWFLAAFAPDNAYSSPICGAIRGGLLGQSQLMRAVEVQG 241
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5649.13988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LLV8_ECTSI3.690e-4985.86PI3K/PI4K catalytic domain-containing protein n=1 ... [more]
A0A6H5JBM1_9PHAE2.400e-4884.85PI3K/PI4K catalytic domain-containing protein n=1 ... [more]
A0A7S3USU3_HETAK1.200e-1645.24Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5A8C9G1_CAFRO1.930e-1236.45PI3K/PI4K catalytic domain-containing protein n=7 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5649contigL-elsbetiae_contig5649:11343..12268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size301
Cds size258
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5649.13988.1prot_L-elsbetiae_contig5649.13988.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5649 11343..11876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816600.6720362-CDS-L-elsbetiae_contig5649:11342..114401622816600.6720362-CDS-L-elsbetiae_contig5649:11342..11440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5649 11343..11440 +
1691683676.3884473-CDS-L-elsbetiae_contig5649:11342..114401691683676.3884473-CDS-L-elsbetiae_contig5649:11342..11440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5649 11343..11440 +
1622816600.68629-CDS-L-elsbetiae_contig5649:11716..118761622816600.68629-CDS-L-elsbetiae_contig5649:11716..11876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5649 11717..11876 +
1691683676.3988025-CDS-L-elsbetiae_contig5649:11716..118761691683676.3988025-CDS-L-elsbetiae_contig5649:11716..11876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5649 11717..11876 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816600.6983933-UTR-L-elsbetiae_contig5649:11876..118901622816600.6983933-UTR-L-elsbetiae_contig5649:11876..11890Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5649 11877..11890 +
1691683676.410312-UTR-L-elsbetiae_contig5649:11876..118901691683676.410312-UTR-L-elsbetiae_contig5649:11876..11890Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5649 11877..11890 +
1622816600.7130246-UTR-L-elsbetiae_contig5649:12240..122681622816600.7130246-UTR-L-elsbetiae_contig5649:12240..12268Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5649 12241..12268 +
1691683676.42067-UTR-L-elsbetiae_contig5649:12240..122681691683676.42067-UTR-L-elsbetiae_contig5649:12240..12268Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5649 12241..12268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5649.13988.1

>prot_L-elsbetiae_contig5649.13988.1 ID=prot_L-elsbetiae_contig5649.13988.1|Name=mRNA_L-elsbetiae_contig5649.13988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
SWLACLRKSRRPSKIWGTCGSAIRNGRSFSCRSTCCFSCTHPSRTAPACR
SSSWAAARRACTRPTPSTGFSGRFVCRAPGSPPWA*
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mRNA from alignment at L-elsbetiae_contig5649:11343..12268+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5649.13988.1 ID=mRNA_L-elsbetiae_contig5649.13988.1|Name=mRNA_L-elsbetiae_contig5649.13988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=926bp|location=Sequence derived from alignment at L-elsbetiae_contig5649:11343..12268+ (Laminarionema elsbetiae ELsaHSoW15)
TCCTGGCTCGCATGTTTGCGCAAGAGCAGGCGGCCATCGAAGATCTGGGG
GACATGTGGAAGCGCGATCCGAAATGGACGGAGTTTTTCCTGCCGCAGGT
GAGCTGCGCTTGCCGCGCCGCACACGACCCCCCCCCCCCGGGGTGTCGCT
CGCTGCTGGTGTCTCTCCTCCATTCTCGTCACCCCCCCGAAAACTACTTG
GTACTATGACCCTCGCCTCCCCCCCCCCCCCCCCCCCCCCCGCGCCCTCC
TTACCTCTCTCGGCCCTGCTTTACGCGCCAACGAGTTACTAACACGGTTG
ATTTTCCGTCTGTGTTTTGTTTTCTGCTCCTTGTGTGGGGGTGGTGTGCA
CGCGCGCGGCACACCGCAACACAGTACATGCTGTTTCTCCTGTACGCATC
CTTCGCGCACAGCCCCGGCCTGCAGGAGCTCCTCTTGGGCCGCTGCGAGA
CGAGCGTGCACACGGCCCACACCATCTACTGGTTTCTCAGGGCGTTTTGT
CTGCAGGGCGCCAGGGTCACCCCCGTGGGCGTGAAGGCCATCGAGCAGGT
GCGCGTAGGGGGGGCTCCGTGTCGCTTTCAACGAAGAAGAAAGGTACTGC
ACTGTACACGAAGGGGAGAGGGAGGGCGAGAGACAGTCCGCTTCGCCCGG
GGTTCAACCCGCCGGCGGGGCTTTCTGTTGTTGGAGGGTCCCGATGCGAA
GGTTGATGGTCGGCGGGGGAGGGGTAGGGGGGGGGGGGGGGGGGATGCAC
GCCTCGGTGCGCTTGGTGGAAAACGAAGTTGTTGGTCGTCCAGCTCTTTG
CCGGCGGCCCGCCCCCTCAGCTTGTTTGGTCCCCCCCCCCCCCCGCACCA
CGCCACGCCTTTGCACGCACCATTGCACCCCACCGATTGCGAGCGCAGAT
GTTGCAGGAGGTGGTTAGTCGGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5649:11343..12268+

>mRNA_L-elsbetiae_contig5649.13988.1 ID=mRNA_L-elsbetiae_contig5649.13988.1|Name=mRNA_L-elsbetiae_contig5649.13988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig5649:11343..12268+ (Laminarionema elsbetiae ELsaHSoW15)
TCCTGGCTCGCATGTTTGCGCAAGAGCAGGCGGCCATCGAAGATCTGGGG
GACATGTGGAAGCGCGATCCGAAATGGACGGAGTTTTTCCTGCCGCAGTC
CTGGCTCGCATGTTTGCGCAAGAGCAGGCGGCCATCGAAGATCTGGGGGA
CATGTGGAAGCGCGATCCGAAATGGACGGAGTTTTTCCTGCCGCAGTACA
TGCTGTTTCTCCTGTACGCATCCTTCGCGCACAGCCCCGGCCTGCAGGAG
CTCCTCTTGGGCCGCTGCGAGACGAGCGTGCACACGGCCCACACCATCTA
CTGGTTTCTCAGGGCGTTTTGTCTGCAGGGCGCCAGGGTCACCCCCGTGG
GCGTGATACATGCTGTTTCTCCTGTACGCATCCTTCGCGCACAGCCCCGG
CCTGCAGGAGCTCCTCTTGGGCCGCTGCGAGACGAGCGTGCACACGGCCC
ACACCATCTACTGGTTTCTCAGGGCGTTTTGTCTGCAGGGCGCCAGGGTC
ACCCCCGTGGGCGTGA
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