mRNA_L-elsbetiae_contig5632.13977.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5632.13977.1
Unique NamemRNA_L-elsbetiae_contig5632.13977.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5632.13977.1 vs. uniprot
Match: D7FK47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK47_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 4.660e-51
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 1
Query:    1 QRRFHWNMAKAPNGERVLAFKGDSLESLANLLARGLTPSFDAVYVNASHEMKDVLGDALLSFRLLKVGGVMIFGDYWKQGVARAAAALEDALGDSLQILHRDK 309
            + RFHWNM KAPNGERV+AFKGDSLESLA L+A GLT SFD VYV+ASHEMKD LGDALLSFRLLKVGGVMIF D+W +GVARA +A E+AL DSLQ+LH+DK
Sbjct:  114 EERFHWNMGKAPNGERVVAFKGDSLESLAGLVASGLTSSFDVVYVDASHEMKDTLGDALLSFRLLKVGGVMIFDDFWMKGVARATSAFEEALWDSLQVLHKDK 216          
BLAST of mRNA_L-elsbetiae_contig5632.13977.1 vs. uniprot
Match: A0A6H5JQS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS8_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 2.790e-42
Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 1
Query:    7 RFHWNMAKAPNGERVLAFKGDSLESLANLLARGLTPSFDAVYVNASHEMKDVLGDALLSFRLLKVGGVMIFGDYWKQGVARAAAALEDALGDSLQILHRDK 309
            RF  NMA+ PNG+RV+AFKG SLESLAN+LA GL   FDAV ++ SHEM DVLGDALLSFR+LKVGGVMIF DYW +GVA+A AA E+ALGD L++LH D+
Sbjct:   63 RFRSNMARIPNGDRVVAFKGSSLESLANILASGLDSRFDAVLLDGSHEMNDVLGDALLSFRMLKVGGVMIFDDYWMRGVAQATAAFEEALGDYLEVLHSDE 163          
BLAST of mRNA_L-elsbetiae_contig5632.13977.1 vs. uniprot
Match: D7FK29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK29_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 1.470e-41
Identity = 71/101 (70.30%), Postives = 85/101 (84.16%), Query Frame = 1
Query:    7 RFHWNMAKAPNGERVLAFKGDSLESLANLLARGLTPSFDAVYVNASHEMKDVLGDALLSFRLLKVGGVMIFGDYWKQGVARAAAALEDALGDSLQILHRDK 309
            RF  NMA+ PNG+RV+AFKG SLESLAN+LA GL   FDAV+++ SHEMK+VL DALLSFR+LKVGGVMIF DYW +GVA A AA E+ALGD L++LHRD+
Sbjct:  140 RFRSNMARVPNGDRVVAFKGTSLESLANILASGLDSRFDAVFLDGSHEMKNVLRDALLSFRMLKVGGVMIFDDYWMRGVAHATAAFEEALGDYLEVLHRDE 240          
BLAST of mRNA_L-elsbetiae_contig5632.13977.1 vs. uniprot
Match: A0A7S2V1H4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1H4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.520e-15
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    7 RFHWNMAKAPNGERVLAFKGDSLESLANLLARGLTPSFDAVYVNASHEMKDVLGDALLSFRLLKVGGVMIFGDY 228
            R+H N    PN E++   +GDSL  LA L+  G    +D +YV+  HE+ +VL D++LSFRLLK+GG+MIF DY
Sbjct:   55 RYHQNTCSHPNKEKIRILEGDSLSGLAQLV--GENKKYDVIYVDGGHEVSEVLADSVLSFRLLKIGGLMIFDDY 126          
BLAST of mRNA_L-elsbetiae_contig5632.13977.1 vs. uniprot
Match: A0A7S4KFR5_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4KFR5_9EUKA)

HSP 1 Score: 75.9 bits (185), Expect = 7.150e-15
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 1
Query:    7 RFHWNMAKAPNGERVLAFKGDSLESLANLLARGLT-------PSFDAVYVNASHEMKDVLGDALLSFRLLKVGGVMIFGDYW---KQGVARAAAALEDALGDSLQILHR 303
            RF  N+A+ PNG RV  F+G +L +L  ++A            +FD +YV+A H   DVL DA L+FRLL+VGG++ F DY    + G+  A AA E    + L+   R
Sbjct:   68 RFSANVARTPNGGRVRTFRGSTLAALGGMIAAAADGDQAAEGDAFDLIYVDAGHSASDVLADAALAFRLLRVGGLVFFDDYHGRCRDGIDAAVAAHEPGTFERLEADQR 176          
BLAST of mRNA_L-elsbetiae_contig5632.13977.1 vs. uniprot
Match: A0A7T4N0Q6_9BURK (Class I SAM-dependent methyltransferase n=1 Tax=Paraburkholderia ginsengisoli TaxID=311231 RepID=A0A7T4N0Q6_9BURK)

HSP 1 Score: 74.3 bits (181), Expect = 3.730e-14
Identity = 43/82 (52.44%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    7 RFHWNM----AKAPNGERVLAFKGDSLESLANLLARGLTPSFDAVYVNASHEMKDVLGDALLSFRLLKVGGVMIFGDY-WKQ 237
            RFH N+     K P+  RV   KG S E LA LLA G    FD VYV+ SH+  DVL DA+L FRLLKVGG++ F DY W +
Sbjct:   85 RFHHNVRLAAGKYPDRVRVTVHKGYSDECLARLLADGKKGYFDFVYVDGSHQAADVLADAVLGFRLLKVGGIIAFDDYLWSE 166          
BLAST of mRNA_L-elsbetiae_contig5632.13977.1 vs. uniprot
Match: A0A7G8VVU2_9BURK (Class I SAM-dependent methyltransferase n=2 Tax=unclassified Variovorax TaxID=663243 RepID=A0A7G8VVU2_9BURK)

HSP 1 Score: 72.8 bits (177), Expect = 1.450e-13
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    7 RFHWNMA----KAPNGERVLAFKGDSLESLANLLARGLTPSFDAVYVNASHEMKDVLGDALLSFRLLKVGGVMIFGDY 228
            RFH N A     AP+   ++  KG S   LA L+ +G   +FD VYV+ SH+  DVL DA+L FRLL+VGGVMIF DY
Sbjct:   85 RFHANTALAIRNAPSAVNLVVHKGLSDVCLAQLVGQGHAETFDFVYVDGSHQAPDVLADAVLGFRLLRVGGVMIFDDY 162          
BLAST of mRNA_L-elsbetiae_contig5632.13977.1 vs. uniprot
Match: A0A1G5IZ77_9HYPH (Methyltransferase domain-containing protein n=1 Tax=Microvirga guangxiensis TaxID=549386 RepID=A0A1G5IZ77_9HYPH)

HSP 1 Score: 72.4 bits (176), Expect = 2.030e-13
Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   31 APNGERVLAFKGDSLESLANLLARGLTPSFDAVYVNASHEMKDVLGDALLSFRLLKVGGVMIFGDY 228
            APN   ++  KG S   LA +LA G   SFD VYV+ SH+  DVL DA+LSFRLLK GG++IF DY
Sbjct:   97 APNPVELVVHKGFSHAQLAKILASGHESSFDMVYVDGSHQAPDVLCDAILSFRLLKTGGLLIFDDY 162          
BLAST of mRNA_L-elsbetiae_contig5632.13977.1 vs. uniprot
Match: A0A1H0YHQ6_9BURK (Methyltransferase domain-containing protein n=2 Tax=Paraburkholderia fungorum TaxID=134537 RepID=A0A1H0YHQ6_9BURK)

HSP 1 Score: 71.2 bits (173), Expect = 6.660e-13
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 QRRFHWNMAKA----PNGERVLAFKGDSLESLANLLARGLTPSFDAVYVNASHEMKDVLGDALLSFRLLKVGGVMIFGDY-WKQGV 243
            +RRFH N+A A    P    +   KG S + LA L+A G    FD VYV+ SH+  DVL DA+L FRLL+VGGV+ F DY W + +
Sbjct:   94 ERRFHHNVALAAARYPGRATIEVHKGFSDDCLAGLIAAGKKGYFDFVYVDGSHQAADVLVDAVLGFRLLRVGGVIAFDDYLWSEAL 179          
BLAST of mRNA_L-elsbetiae_contig5632.13977.1 vs. uniprot
Match: A0A4P7CMF3_9PAST (Class I SAM-dependent methyltransferase n=3 Tax=Actinobacillus indolicus TaxID=51049 RepID=A0A4P7CMF3_9PAST)

HSP 1 Score: 70.1 bits (170), Expect = 1.490e-12
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   22 MAKAPNGERVLAFKGDSLESLANLLARGLTPSFDAVYVNASHEMKDVLGDALLSFRLLKVGGVMIFGDY 228
            +++  N  +V+ +KG S E +  LLA+G +  FD +YV+ SHE  DVL DALL+ RL+KVGGV+ F DY
Sbjct:   91 LSQVTNSVKVMKYKGYSHERMIELLAKGYSNYFDFIYVDGSHEAPDVLFDALLAHRLVKVGGVIAFDDY 159          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5632.13977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK47_ECTSI4.660e-5178.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQS8_9PHAE2.790e-4270.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK29_ECTSI1.470e-4170.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V1H4_9STRA1.520e-1548.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4KFR5_9EUKA7.150e-1539.45Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7T4N0Q6_9BURK3.730e-1452.44Class I SAM-dependent methyltransferase n=1 Tax=Pa... [more]
A0A7G8VVU2_9BURK1.450e-1351.28Class I SAM-dependent methyltransferase n=2 Tax=un... [more]
A0A1G5IZ77_9HYPH2.030e-1356.06Methyltransferase domain-containing protein n=1 Ta... [more]
A0A1H0YHQ6_9BURK6.660e-1347.67Methyltransferase domain-containing protein n=2 Ta... [more]
A0A4P7CMF3_9PAST1.490e-1249.28Class I SAM-dependent methyltransferase n=3 Tax=Ac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5632contigL-elsbetiae_contig5632:10539..11987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue1.5e-35
Seed eggNOG ortholog2880.D7FK47
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2DZ7R@1,2S6WK@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size309
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5632.13977.1prot_L-elsbetiae_contig5632.13977.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5632 10539..11966 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.6947365-CDS-L-elsbetiae_contig5632:10538..106971622816599.6947365-CDS-L-elsbetiae_contig5632:10538..10697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5632 10539..10697 -
1691683675.7627435-CDS-L-elsbetiae_contig5632:10538..106971691683675.7627435-CDS-L-elsbetiae_contig5632:10538..10697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5632 10539..10697 -
1622816599.7071185-CDS-L-elsbetiae_contig5632:11837..119661622816599.7071185-CDS-L-elsbetiae_contig5632:11837..11966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5632 11838..11966 -
1691683675.7749426-CDS-L-elsbetiae_contig5632:11837..119661691683675.7749426-CDS-L-elsbetiae_contig5632:11837..11966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5632 11838..11966 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.718053-UTR-L-elsbetiae_contig5632:11966..119871622816599.718053-UTR-L-elsbetiae_contig5632:11966..11987Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5632 11967..11987 -
1691683675.7853897-UTR-L-elsbetiae_contig5632:11966..119871691683675.7853897-UTR-L-elsbetiae_contig5632:11966..11987Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5632 11967..11987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5632.13977.1

>prot_L-elsbetiae_contig5632.13977.1 ID=prot_L-elsbetiae_contig5632.13977.1|Name=mRNA_L-elsbetiae_contig5632.13977.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MAKAPNGERVLAFKGDSLESLANLLARGLTPSFDAVYVNASHEMKDVLGD
ALLSFRLLKVGGVMIFGDYWKQGVARAAAALEDALGDSLQILHRDK
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mRNA from alignment at L-elsbetiae_contig5632:10539..11987-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5632.13977.1 ID=mRNA_L-elsbetiae_contig5632.13977.1|Name=mRNA_L-elsbetiae_contig5632.13977.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1449bp|location=Sequence derived from alignment at L-elsbetiae_contig5632:10539..11987- (Laminarionema elsbetiae ELsaHSoW15)
CAGAGACGGTTCCACTGGAATATGGCAAAGGCCCCTAACGGTGAGCGGGT GCTCGCTTTCAAGGGCGATTCTCTTGAGTCATTGGCAAACCTCCTGGCCA GGGGGCTTACCCCGTCTTTCGATGCCGTCTACGTAAATGCTTCACATGAG GTGAGCCAAAAGGGACGGGGGGCACTGCAGCCAAAATTACCCTGTGAGTG CTACGCTTCAAGCCCAAGTCGGTGCTGCCGGTAACCGCTAAGTCTCAATC ACGTAAATATAGCGTGTTCGCATGTACAATCGCTTGAATGTCGAGCCATC CCCGATCAGTTCGTTTTTGGGTTACCGAAACCCCTTTTGAATTCTCTGGG GCGCTCTGGGGTGTAAACCGCAATCTTGAAAATGGCTGCAATGCGTACCG GCGGGTGGGCGAACGGAGTTCAAAACCACTTGGCCTGATCGAGCTTTGTT TGGCGTCTTTGCCTGGAGAAAAGGCTGCCTCTCCAGCTAAGCTGTAGGAC TGGGATTTCGGTGCCTGGCGTGATATCATACTGCGGTCGTGCAGCAACAC ACAGACTGTAGAATAGGGACCCACACGGTCAATTGACAAGAAGTCAAGCC CTACAATCAAGACCATTTATAACTCACCAAAATATATCGAGCGAAGGGTG AACCACAGATCCAAATGAAACACCAATATTACAACTGTTGTCTTGATATT TATTACTTGAAAAATGATCATTACAACCATCCTTTAACGATCCTGCAGTG GTGGGTGTCTCAGTCTACCAGGAAACGCTTGGTTGGGTAGTTGTGAAGCT TGTTACACTTTTATCGTTTTTGGGATGACCCCGGGGGCGGTCTCCCACGG TTCGTACCATGCCCCTCGGCTGGCGGATCATCTTGATGGTAACCATGAAG ATTAACGATTTTGATTGTGCGGAAAAAGTTCCGGCCTTGGCCATCCCACT CTGCGCTAACGGCTATTTGGCGCGAAAGCGATTAAAGCTGTCGGGGCCAT CCGAAGCACGAGCAAAGCACCATCAAACTTCAACATGTACTCTCACCGTA TGGAAGTTTGCAATTGGAAGTTTGCAAATAGAAGTTGGGATTTTCAACAG GCAGCCCCCCAAAAGTGGTGAGTTAGCGACTGAGTCAATTGCGTTCTTCG GCTAAGAAGCAGACACCTGAATTGCCGATGCCCGGTCAACAATTTCTGTC TAGAAGCACCGTGAATCAGTATTGTTTATGCTCTCCTGGCCTCACCAAAC CTCAACACTCTCTCAATTCCACGTTGTTTGCCATGGCCAGATGAAGGATG TGCTGGGAGATGCGCTGCTGTCCTTCCGCCTACTCAAGGTCGGGGGGGTC ATGATATTCGGCGACTACTGGAAGCAGGGGGTAGCGCGAGCAGCGGCGGC GCTCGAAGATGCCCTAGGCGACTCGCTCCAGATTCTGCACAGAGACAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5632:10539..11987-

>mRNA_L-elsbetiae_contig5632.13977.1 ID=mRNA_L-elsbetiae_contig5632.13977.1|Name=mRNA_L-elsbetiae_contig5632.13977.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig5632:10539..11987- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAAAGGCCCCTAACGGTGAGCGGGTGCTCGCTTTCAAGGGCGATTC
TCTTGAGTCATTGGCAAACCTCCTGGCCAGGGGGCTTACCCCGTCTTTCG
ATGCCGTCTACGTAAATGCTTCACATGAGATGGCAAAGGCCCCTAACGGT
GAGCGGGTGCTCGCTTTCAAGGGCGATTCTCTTGAGTCATTGGCAAACCT
CCTGGCCAGGGGGCTTACCCCGTCTTTCGATGCCGTCTACGTAAATGCTT
CACATGAGATGAAGGATGTGCTGGGAGATGCGCTGCTGTCCTTCCGCCTA
CTCAAGGTCGGGGGGGTCATGATATTCGGCGACTACTGGAAGCAGGGGGT
AGCGCGAGCAGCGGCGGCGCTCGAAGATGCCCTAGGCGACTCGCTCCAGA
TTCTGCACAGAGACAAGATGAAGGATGTGCTGGGAGATGCGCTGCTGTCC
TTCCGCCTACTCAAGGTCGGGGGGGTCATGATATTCGGCGACTACTGGAA
GCAGGGGGTAGCGCGAGCAGCGGCGGCGCTCGAAGATGCCCTAGGCGACT
CGCTCCAGATTCTGCACAGAGACAAG
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