mRNA_L-elsbetiae_contig5619.13952.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5619.13952.1
Unique NamemRNA_L-elsbetiae_contig5619.13952.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5619.13952.1 vs. uniprot
Match: A0A6H5KQ12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ12_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.210e-26
Identity = 81/180 (45.00%), Postives = 96/180 (53.33%), Query Frame = 2 
Query:  395 MRTDIIWPVVWGTCFVGGVILGSTGPVNVLAFGSSSPKLRGSEQVAEKVS---ENMVEQRRLLQLQQDDGIFAQARNVTAAASAP----------------IIPATAPTTPRALGSS---DFDADFGEGR--QAETGGSVYGGP-STVAQRVHALNGGLWGPNEEEEQEIALELARLREE 859
            MR DI W  VW +CF+GGVILGSTGP   LAFGSSSP LRGS  +  K S   E +V        Q+ D   A  +++ A+ S                      T PT  R+LGS    D D+   E      E   S YG P S +AQR++ LNGGLWGP EEEE+EIA ELA LREE
Sbjct:    1 MRADIFWSAVWSSCFIGGVILGSTGPAKTLAFGSSSPSLRGSSSIQSKPSQPSETIV--------QRKDETVAAEKDIKASISTKQXXXXXXXXXXXXXXXXXSITPPTKNRSLGSEPDGDLDSSLDESLVDDNEPSLSAYGLPRSKIAQRLNRLNGGLWGPTEEEEREIAKELAALREE 172
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BLAST of mRNA_L-elsbetiae_contig5619.13952.1 vs. uniprot
Match: D7G7B9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B9_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 4.900e-26
Identity = 80/182 (43.96%), Postives = 94/182 (51.65%), Query Frame = 2 
Query:  395 MRTDIIWPVVWGTCFVGGVILGSTGPVNVLAFGSSSPKLRGSEQVAEKVSENMVEQRRLLQLQQDDGIFAQARNVTAAA------SAPI----------------IPATAPTTP----RALGSSDFDADFGEGRQAETGGSVYGGP-STVAQRVHALNGGLWGPNEEEEQEIALELARLREE 859
            MR DI W  VW +CF+GGVILGSTGP N LAFGSSSP LRGS     K SE  V+++       D+ + A+   +           API                  A A  TP    R+LG  D   D       +   S YG P S +AQR+  LNGGLWGP EEEE+EIA ELA LREE
Sbjct:    1 MRADIFWSAVWSSCFIGGVILGSTGPANTLAFGSSSPSLRGSSSAQTKPSETTVQRK-------DETVAAEKEMINEXXXXXXEIKAPISSKQXXXXXXXXXXXXXDAAASITPTTKNRSLGDLDSSLDESLLDDEQPSLSAYGLPRSKIAQRIKRLNGGLWGPTEEEEKEIAKELAALREE 175
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5619.13952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQ12_9PHAE3.210e-2645.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7B9_ECTSI4.900e-2643.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5619contigL-elsbetiae_contig5619:4258..8035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size1539
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5619.13952.1prot_L-elsbetiae_contig5619.13952.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5619 4806..7044 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.7508485-UTR-L-elsbetiae_contig5619:4257..48051622816596.7508485-UTR-L-elsbetiae_contig5619:4257..4805Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5619 4258..4805 -
1691683673.4334843-UTR-L-elsbetiae_contig5619:4257..48051691683673.4334843-UTR-L-elsbetiae_contig5619:4257..4805Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5619 4258..4805 -
1622816596.8028336-UTR-L-elsbetiae_contig5619:7044..71501622816596.8028336-UTR-L-elsbetiae_contig5619:7044..7150Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5619 7045..7150 -
1691683673.4820569-UTR-L-elsbetiae_contig5619:7044..71501691683673.4820569-UTR-L-elsbetiae_contig5619:7044..7150Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5619 7045..7150 -
1622816596.8139405-UTR-L-elsbetiae_contig5619:7747..80351622816596.8139405-UTR-L-elsbetiae_contig5619:7747..8035Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5619 7748..8035 -
1691683673.5005214-UTR-L-elsbetiae_contig5619:7747..80351691683673.5005214-UTR-L-elsbetiae_contig5619:7747..8035Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5619 7748..8035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.7649102-CDS-L-elsbetiae_contig5619:4805..49371622816596.7649102-CDS-L-elsbetiae_contig5619:4805..4937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5619 4806..4937 -
1691683673.4436853-CDS-L-elsbetiae_contig5619:4805..49371691683673.4436853-CDS-L-elsbetiae_contig5619:4805..4937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5619 4806..4937 -
1622816596.7781107-CDS-L-elsbetiae_contig5619:5550..58711622816596.7781107-CDS-L-elsbetiae_contig5619:5550..5871Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5619 5551..5871 -
1691683673.455294-CDS-L-elsbetiae_contig5619:5550..58711691683673.455294-CDS-L-elsbetiae_contig5619:5550..5871Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5619 5551..5871 -
1622816596.7918997-CDS-L-elsbetiae_contig5619:6900..70441622816596.7918997-CDS-L-elsbetiae_contig5619:6900..7044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5619 6901..7044 -
1691683673.4700093-CDS-L-elsbetiae_contig5619:6900..70441691683673.4700093-CDS-L-elsbetiae_contig5619:6900..7044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5619 6901..7044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5619.13952.1

>prot_L-elsbetiae_contig5619.13952.1 ID=prot_L-elsbetiae_contig5619.13952.1|Name=mRNA_L-elsbetiae_contig5619.13952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=199bp
MRTDIIWPVVWGTCFVGGVILGSTGPVNVLAFGSSSPKLRGSEQVAEKVS
ENMVEQRRLLQLQQDDGIFAQARNVTAAASAPIIPATAPTTPRALGSSDF
DADFGEGRQAETGGSVYGGPSTVAQRVHALNGGLWGPNEEEEQEIALELA
RLREEAFRAPITSSSEGEGRQDNFSFNFSYDFEAGGTSFSYDYEFPQY*
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mRNA from alignment at L-elsbetiae_contig5619:4258..8035-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5619.13952.1 ID=mRNA_L-elsbetiae_contig5619.13952.1|Name=mRNA_L-elsbetiae_contig5619.13952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3778bp|location=Sequence derived from alignment at L-elsbetiae_contig5619:4258..8035- (Laminarionema elsbetiae ELsaHSoW15)
GGGCCGCTTGCCTCCCGACAGTGCCCTGGAACCGCTGCTGCCGGTAACGC
TGTCCACCAACGGCGACCTTGCCCTTATCACACCAACAAACCCGCCACCA
CCGCCACCGCCACCACCACAAAACAACCTCCCATTACTAGCTCGACGCTG
CTGCATCGCACTCGTGGTTGGTCCTCTTGGTGTTTCAGCTGATGCCCACC
GGCCGGTTGACCTCCGTCCATTGCTGCTAAAGCCAGCGGATGCTGCTCTT
GCGATTACACCTGGACGAGAGGCTGCTGTGCCAGCTGGGCGCAGGGCCGC
AGAGAGCGGAAGAAGGCAGCAGCAGGAAAAGGCATACAGGGACCGCCAGG
GTTTCATCGTAGAGGCTAGAGCACCGCCTACATACGCCATCTCGAGCTCA
AACACACGTTGCCCTGGAGGACTTCGGGGGGACGCAGACAGGCTAGAGGT
ACGGTACTGCTTGGTCCAAGAGTTTGTGAAGGTAAAGAGCGTGCCCCCGT
CGCTGGTCGGCGGCTCTTTTACGTCGGTAACCACATGAAAATATTTTGGG
GCAGTGGCAGTTACACATGAATATACTTTGGGCCAGTGCCTTTTCACACT
CGTACAGATGGTCCAACTCAGGCGGACGACTCCGAGAGGTCAGAGGTTAG
CCACCCAAATGTTAAAATGTGGCAAGAGAACTCCAAAACAGCAGGCAGGG
TGATGGTCTCTAGTACCACCCCGAGTCGGGTCTCGTATTTTTCTCCTGCG
GCCGGGCAGGGTCCCACACAGGACAAAGTCGAGAGGGTCCGCTGACCGGG
TCCCACCGCACCACACCACACCCCACCGCACCACACCCCACCCCACACTC
ACACAAACTCGTCAGCCCTCATCACCACTCACCAGCCTTCACCAGACTAG
CCGGCCAATACACTCCCCTCCGCGTGGCAACCGGCAGAATCAGCAGCAGC
AGCAGCAAGCATTACCGCCGGGACCGTGAACACACATCAAAATGCGTACT
GATATCATCTGGCCGGTGGTATGGGGCACTTGCTTTGTCGGGGGCGTGAT
TCTGGGCAGCACCGGCCCGGTCAACGTCTTGGCCTTCGGCTCCTCGTCGC
CTAAGCTTCGTGGAAGCGAACAAGTTGCAGAGAAGGTAGGAGGAGCAATT
TCTTTTTTTCCGAAGGTTTGAAACCGGGACTAAAAGCAGCTGTAGTGCGC
ACTTTCAGTTGATTGTTTCCGTGTCCTGCGTGATTTGTTCGTTTGCTTGA
GTGGAAGTTGACAAGACGAAAACATACAGATCGGGTTCGCAGTTTTGCAC
CGATTGCGCGCATGCATGACGGTCAACAGAAAACGTCATCATTGTTGATT
GGTTGACCTGTTCATATATCTATGCGCTCGTTTTGGAATTCGGAGACCAC
GACCCGCAAATATCGGTTTTTTTAGTTTAAACGCTCGAGGCGGGGATGCC
GGTCGCAATTATGGCTGCTACTACCGTGCCCGCTGATGCTGGTGCCTCTT
TATCTATACTGCCACGCTGCTCCTTCTTCTGCTGCTACGCCACTGCTGTG
CTGCTGCTGCTGTTGTCTCGTTAGCGAAGAGATCAAATTAATTGTGCGTG
AATCTCGGGGGGAAAGCACTACTCCGTATTTACTAAATATGTGGTCTAGA
CTATATACATAACATGTTTCTACATCATTCATGCATAGATGAATCTCTAG
ACGATAACCTATCTCTAGGCTAGACTAGATATATGTGTAGTAAATCTACA
CACGCCCTCTTAAACTATAGTCTACCGTTGGTGACACAAGATAGCACACC
CCTTGGATCAAATTTTAGAGCTCGACTACTCCGTAACGAAGAAGGTGCCA
GCTCCAAACAACACATTTTCGGACAGCCATCGACTAGATATTTCTAACGC
TACGCCTTTCGACACTGCCACTCTTCTCGCTGGGGAGGGATCGAGCTTTG
AAAATCTGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTATACATAT
AGACTCGACTGACCCCAGGATACCCGTCTAGACTATGTTTTTTTTTCTGG
ATACCCAGCACGTTTTACCAGCGCTTTTGGACGACCGAGCAAGAAAAAAT
TCATTTCTAATAATAATGTTGTGTGCGTTTGAACCAACGTACATACATGC
GTATCTTCTTGCAGGTATCTGAGAACATGGTCGAGCAACGGCGGCTGCTG
CAGCTGCAGCAAGATGACGGTATATTTGCACAGGCCCGCAACGTTACTGC
TGCTGCAAGTGCTCCCATCATACCCGCGACCGCGCCCACCACCCCCCGCG
CGTTGGGTTCGTCCGACTTCGACGCGGACTTCGGCGAAGGCCGTCAGGCC
GAGACGGGCGGTAGTGTCTATGGCGGGCCGAGCACCGTCGCGCAGCGCGT
CCATGCGCTCAACGGCGGACTCTGGGGACCCAACGAGGAGGAGGAGCAAG
AGATTGCGCTGGAGCTAGCGCGCCTGCGCGAAGAGGTGTGTGCGTGTGCG
TGTGTTTGCGTTTGTGTGAGGTGCGTGGGTGTGTGTGCGTTGGTGTGTTG
CGTCTGCATTGCACCGTACTTTTTCAACCTTGAGTTCGCGCCAATCAGAC
CCTCCCGAGTGTGGCGCCCACACACACCGCTAGTAAAGCAGTTGTGTCCA
CAGAATATTAAATACATGTGTCGTCCACCTCCGCCATTATTATTCGCACA
ACGAAATAACCTTCAATGCGCTCGCCATCAAAAATATGAAGCTCCGTTTC
TACAACTCGGTGCCTTCGAAGCCTGTGCACCTTCTATCTAAATCTTCGAA
GATACAAACAAACGTGCAAAATCAGGCTGCCCCTGTTACAAGGGGTTCAA
AGGTTGAGATGTGGGATCCTTCCAAACACGCGCCCACCCTTCCCTCCCCC
TTGTCGGCGACTATCTAGTGTGCTCCGTTTCGAGGCCAGATAGGGGTGCG
ACATATGTACATAGATACAGATAGACTAGTCTTCTTGCAGATAAGTCTAT
GCCCATATAACACAATGATGACCTGACGGCAACGCAGGACCGATATAACG
AGTGCACTCCTGCCTCCCCCGCCCGCCCCTGCCCATCCCCATTTACAGGC
GTTCAGAGCCCCGATCACGTCGTCGTCCGAAGGAGAAGGGCGGCAGGATA
ATTTCTCCTTCAACTTCAGCTATGACTTTGAGGCGGGCGGCACATCGTTC
AGCTACGACTACGAGTTCCCCCAATACTGATTGGAAGTGTGGCGCAGAGA
GTAACGATGACGGGAGCGTTCCGTCGTAGCGGTCCGTTTGGCTGCCTGGT
TGGCTGAATCGACTTGACTACTACTACTGTACATATGGTCTATATTTAAT
GTATGGGTTGGTTGTTTGATTCGATCCGTACGACGGGGGAGCTGCAGCAC
TCTCGTATGTATATGCCGCACAACACCCCCCCGCTGTGTTCCCGCTCTAT
CTACTGTTGTCCCATTCCCCATTCTGGGCAAGAAGTTGAGGAGGTTGTCG
AAAAGCATCGTGATATATATAGTACGACGAATGACGATGAGCAAATAAAT
CCCTCGATGCTGTCTTTGTCTTCCCTTGGGATGCCGATGACTTATTTACG
TGATGTTTCGAGGACCGTTTTTGTTTTATTTCAAGTGATGGCTATAGATA
TCTATCTGTGTACTTTTTCACGTTCGTTGAAGTGGCACTCATTTTTGGCA
GTAGGTATTACTGGAAAAGTAATTCTGCGTTTATGTGCGATATATATGCG
CATGTTTAGTCCCTCTGGAAATGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5619:4258..8035-

>mRNA_L-elsbetiae_contig5619.13952.1 ID=mRNA_L-elsbetiae_contig5619.13952.1|Name=mRNA_L-elsbetiae_contig5619.13952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig5619:4258..8035- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTACTGATATCATCTGGCCGGTGGTATGGGGCACTTGCTTTGTCGG
GGGCGTGATTCTGGGCAGCACCGGCCCGGTCAACGTCTTGGCCTTCGGCT
CCTCGTCGCCTAAGCTTCGTGGAAGCGAACAAGTTGCAGAGAAGATGCGT
ACTGATATCATCTGGCCGGTGGTATGGGGCACTTGCTTTGTCGGGGGCGT
GATTCTGGGCAGCACCGGCCCGGTCAACGTCTTGGCCTTCGGCTCCTCGT
CGCCTAAGCTTCGTGGAAGCGAACAAGTTGCAGAGAAGGTATCTGAGAAC
ATGGTCGAGCAACGGCGGCTGCTGCAGCTGCAGCAAGATGACGGTATATT
TGCACAGGCCCGCAACGTTACTGCTGCTGCAAGTGCTCCCATCATACCCG
CGACCGCGCCCACCACCCCCCGCGCGTTGGGTTCGTCCGACTTCGACGCG
GACTTCGGCGAAGGCCGTCAGGCCGAGACGGGCGGTAGTGTCTATGGCGG
GCCGAGCACCGTCGCGCAGCGCGTCCATGCGCTCAACGGCGGACTCTGGG
GACCCAACGAGGAGGAGGAGCAAGAGATTGCGCTGGAGCTAGCGCGCCTG
CGCGAAGAGGTATCTGAGAACATGGTCGAGCAACGGCGGCTGCTGCAGCT
GCAGCAAGATGACGGTATATTTGCACAGGCCCGCAACGTTACTGCTGCTG
CAAGTGCTCCCATCATACCCGCGACCGCGCCCACCACCCCCCGCGCGTTG
GGTTCGTCCGACTTCGACGCGGACTTCGGCGAAGGCCGTCAGGCCGAGAC
GGGCGGTAGTGTCTATGGCGGGCCGAGCACCGTCGCGCAGCGCGTCCATG
CGCTCAACGGCGGACTCTGGGGACCCAACGAGGAGGAGGAGCAAGAGATT
GCGCTGGAGCTAGCGCGCCTGCGCGAAGAGGCGTTCAGAGCCCCGATCAC
GTCGTCGTCCGAAGGAGAAGGGCGGCAGGATAATTTCTCCTTCAACTTCA
GCTATGACTTTGAGGCGGGCGGCACATCGTTCAGCTACGACTACGAGTTC
CCCCAATACTGAGCGTTCAGAGCCCCGATCACGTCGTCGTCCGAAGGAGA
AGGGCGGCAGGATAATTTCTCCTTCAACTTCAGCTATGACTTTGAGGCGG
GCGGCACATCGTTCAGCTACGACTACGAGTTCCCCCAATACTGA
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