prot_L-elsbetiae_contig5619.13952.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5619.13952.1
Unique Nameprot_L-elsbetiae_contig5619.13952.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length199
Homology
BLAST of mRNA_L-elsbetiae_contig5619.13952.1 vs. uniprot
Match: A0A6H5KQ12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ12_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.070e-28
Identity = 81/180 (45.00%), Postives = 96/180 (53.33%), Query Frame = 0
Query:    1 MRTDIIWPVVWGTCFVGGVILGSTGPVNVLAFGSSSPKLRGSEQVAEKVS---ENMVEQRRLLQLQQDDGIFAQARNVTAAASAP----------------IIPATAPTTPRALGSS---DFDADFGEGR--QAETGGSVYGGP-STVAQRVHALNGGLWGPNEEEEQEIALELARLREE 155
            MR DI W  VW +CF+GGVILGSTGP   LAFGSSSP LRGS  +  K S   E +V        Q+ D   A  +++ A+ S                      T PT  R+LGS    D D+   E      E   S YG P S +AQR++ LNGGLWGP EEEE+EIA ELA LREE
Sbjct:    1 MRADIFWSAVWSSCFIGGVILGSTGPAKTLAFGSSSPSLRGSSSIQSKPSQPSETIV--------QRKDETVAAEKDIKASISTKQXXXXXXXXXXXXXXXXXSITPPTKNRSLGSEPDGDLDSSLDESLVDDNEPSLSAYGLPRSKIAQRLNRLNGGLWGPTEEEEREIAKELAALREE 172          
BLAST of mRNA_L-elsbetiae_contig5619.13952.1 vs. uniprot
Match: D7G7B9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B9_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.670e-28
Identity = 80/182 (43.96%), Postives = 94/182 (51.65%), Query Frame = 0
Query:    1 MRTDIIWPVVWGTCFVGGVILGSTGPVNVLAFGSSSPKLRGSEQVAEKVSENMVEQRRLLQLQQDDGIFAQARNVTAAA------SAPI----------------IPATAPTTP----RALGSSDFDADFGEGRQAETGGSVYGGP-STVAQRVHALNGGLWGPNEEEEQEIALELARLREE 155
            MR DI W  VW +CF+GGVILGSTGP N LAFGSSSP LRGS     K SE  V+++       D+ + A+   +           API                  A A  TP    R+LG  D   D       +   S YG P S +AQR+  LNGGLWGP EEEE+EIA ELA LREE
Sbjct:    1 MRADIFWSAVWSSCFIGGVILGSTGPANTLAFGSSSPSLRGSSSAQTKPSETTVQRK-------DETVAAEKEMINEXXXXXXEIKAPISSKQXXXXXXXXXXXXXDAAASITPTTKNRSLGDLDSSLDESLLDDEQPSLSAYGLPRSKIAQRIKRLNGGLWGPTEEEEKEIAKELAALREE 175          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5619.13952.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQ12_9PHAE1.070e-2845.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7B9_ECTSI1.670e-2843.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 33..198
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5619contigL-elsbetiae_contig5619:4806..7044 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5619.13952.1mRNA_L-elsbetiae_contig5619.13952.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5619 4258..8035 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5619.13952.1 ID=prot_L-elsbetiae_contig5619.13952.1|Name=mRNA_L-elsbetiae_contig5619.13952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=199bp
MRTDIIWPVVWGTCFVGGVILGSTGPVNVLAFGSSSPKLRGSEQVAEKVS
ENMVEQRRLLQLQQDDGIFAQARNVTAAASAPIIPATAPTTPRALGSSDF
DADFGEGRQAETGGSVYGGPSTVAQRVHALNGGLWGPNEEEEQEIALELA
RLREEAFRAPITSSSEGEGRQDNFSFNFSYDFEAGGTSFSYDYEFPQY*
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