mRNA_L-elsbetiae_contig558.13895.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig558.13895.1 vs. uniprot
Match: D7FPC7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC7_ECTSI) HSP 1 Score: 498 bits (1282), Expect = 1.280e-165 Identity = 262/350 (74.86%), Postives = 291/350 (83.14%), Query Frame = 1 Query: 847 GSDFISFSLAVVFIVVPTSVMVANTMAAARGRDKNKKIFLTVFQLRLVWEARDGLAKRRETRDYKTAKFIEACFEAAPQMLLQTVALASLWNDKEAKSSDLFVAFSILNSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFHLCEVGLRGVSLALLALTLQGWAALVMLGVWGVRVTIARATEASDLKMTKVLIKALAACLLDSIWDSKPAYIIASVCTLVESSIFFVLASVRLRRGEGPLGGAVSDAAWATGSVYALRFALDVWLRAPLHWGSFFGAGDPLSRSSWRGGVSRVRQVL--GKPPPLATRPTEPPPSALATKATP-APRRLDF 1887 GSD +SF LAV+FIVVPTSV+VA+TM+ +R RD+NKKI LTV QLRLVWEARDGL KRRETRDYKTAKF+EACFEAAPQMLLQTVA+ SLWNDKE +SD FVAFSI+NSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFH+CEVGLRG+SL++LALTL+GW+ALVM GVWG RV IA+ATEASDLK TKVLIKALAACLLDSIWDSK AYI ASVCTL+ESS FFV+AS+ LR PL A+S+ AW GSVYALRF LD+WLRAPLHWG+ D S WR GVSR+R L + P T P EP P A +ATP +PRR F Sbjct: 186 GSDVLSFVLAVIFIVVPTSVVVASTMSGSRERDRNKKILLTVLQLRLVWEARDGLKKRRETRDYKTAKFVEACFEAAPQMLLQTVAVVSLWNDKETDNSDAFVAFSIMNSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFHVCEVGLRGLSLSMLALTLRGWSALVMAGVWGARVGIAKATEASDLKTTKVLIKALAACLLDSIWDSKSAYIAASVCTLLESSTFFVVASLELRGENTPLEEALSEVAWVAGSVYALRFVLDLWLRAPLHWGTLIDVED--LPSCWREGVSRLRGALFERRSPSATTMPAEPSPLATTPQATPLSPRRAGF 533
BLAST of mRNA_L-elsbetiae_contig558.13895.1 vs. uniprot
Match: A0A6H5L3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3J2_9PHAE) HSP 1 Score: 442 bits (1136), Expect = 1.300e-143 Identity = 443/633 (69.98%), Postives = 473/633 (74.72%), Query Frame = 1 Query: 1 LLSPPRQRNSRSVDGAGAAWFGVSLGTAARVTELRLVDNGLVGTLPSALGGLEVLRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLISKLGATKVQKFIMPGNRLADVDTAMLLLRRPLHNQADRGLLIFSLIAAYVDLGSDVGAAATFYLGSDFISFSLAVVFIVVPTSVMVANTMAAARGRDKNKKIFLTVFQLRLVWEARDGLAKRRETRDYKTAKFIEACFEAAPQMLLQTVALASLWNDKEAKSSDLFVAFSILNSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFHLCEVGLRGVSLALLALTLQGWAALVMLGVWGVRVTIARATEASDLKMTKVLIKALAACLLDSIWDSKPAYIIASVCTLVESSIFFVLASVRLRRGEGPLGGAVSDAAWATGSVYALRFALDVWLRAPLHWGSFFGAGD-PLSRSSWRGGVSRVRQVL-GKPPPLATR-PTEPPPSALATKATP-APRRLDF 1887 +L PPR+ + D + A WFGVSLGT RVTEL+LVDNGLVGTLP+ALGGLE+LRY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLI+ LGAT+VQK IMPGNRLADVDT LRLVWEARDGL K RETRDYKTAKF+EACFEAAPQMLLQTVA+ SLWNDKEA +SD+FVAFSI+NSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFH VGLRG SLA+LALTL+GW+ALVM GVWG RV IA+ATEASDLK TKVLIKALAACLLDSIWDSK AYI ASVCTL+ESS FFV+AS+ LR PL A+S+ AW GSVYALRF LD+WLRAPLHWG+ D P GG+SR+R L G+ P AT P EPP +ATP +PRR F Sbjct: 1 MLDPPRKNDWTPPD-SRAEWFGVSLGTGGRVTELKLVDNGLVGTLPNALGGLEMLRYLHLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLIANLGATRVQKNIMPGNRLADVDT-------------------------------------------------------------------------------------LRLVWEARDGLKKGRETRDYKTAKFVEACFEAAPQMLLQTVAVVSLWNDKEADNSDMFVAFSIMNSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFH---VGLRGSSLAVLALTLRGWSALVMAGVWGARVAIAKATEASDLKTTKVLIKALAACLLDSIWDSKSAYIAASVCTLLESSTFFVVASLELRGENTPLEEALSEVAWVAGSVYALRFVLDLWLRAPLHWGTLIDVEDLPFCCG---GGISRLRGALFGRRSPSATTLPAEPPQLGTTPQATPMSPRRAGF 541 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig558.13895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig558.13895.1 >prot_L-elsbetiae_contig558.13895.1 ID=prot_L-elsbetiae_contig558.13895.1|Name=mRNA_L-elsbetiae_contig558.13895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=507bp MGCLVSLQLSHNDLEGVLPAEISKLSALVTLCLDHNRFCGPIPRGISGMKback to top mRNA from alignment at L-elsbetiae_contig558:13769..24044+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig558.13895.1 ID=mRNA_L-elsbetiae_contig558.13895.1|Name=mRNA_L-elsbetiae_contig558.13895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10276bp|location=Sequence derived from alignment at L-elsbetiae_contig558:13769..24044+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig558:13769..24044+ >mRNA_L-elsbetiae_contig558.13895.1 ID=mRNA_L-elsbetiae_contig558.13895.1|Name=mRNA_L-elsbetiae_contig558.13895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3042bp|location=Sequence derived from alignment at L-elsbetiae_contig558:13769..24044+ (Laminarionema elsbetiae ELsaHSoW15)back to top |