prot_L-elsbetiae_contig558.13895.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig558.13895.1
Unique Name	prot_L-elsbetiae_contig558.13895.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	507

Homology

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BLAST of mRNA_L-elsbetiae_contig558.13895.1 vs. uniprot
Match: D7FPC7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC7_ECTSI)

HSP 1 Score: 498 bits (1282), Expect = 1.730e-169
Identity = 262/350 (74.86%), Postives = 291/350 (83.14%), Query Frame = 0

Query:  160 GSDFISFSLAVVFIVVPTSVMVANTMAAARGRDKNKKIFLTVFQLRLVWEARDGLAKRRETRDYKTAKFIEACFEAAPQMLLQTVALASLWNDKEAKSSDLFVAFSILNSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFHLCEVGLRGVSLALLALTLQGWAALVMLGVWGVRVTIARATEASDLKMTKVLIKALAACLLDSIWDSKPAYIIASVCTLVESSIFFVLASVRLRRGEGPLGGAVSDAAWATGSVYALRFALDVWLRAPLHWGSFFGAGDPLSRSSWRGGVSRVRQVL--GKPPPLATRPTEPPPSALATKATP-APRRLDF 506
            GSD +SF LAV+FIVVPTSV+VA+TM+ +R RD+NKKI LTV QLRLVWEARDGL KRRETRDYKTAKF+EACFEAAPQMLLQTVA+ SLWNDKE  +SD FVAFSI+NSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFH+CEVGLRG+SL++LALTL+GW+ALVM GVWG RV IA+ATEASDLK TKVLIKALAACLLDSIWDSK AYI ASVCTL+ESS FFV+AS+ LR    PL  A+S+ AW  GSVYALRF LD+WLRAPLHWG+     D    S WR GVSR+R  L   + P   T P EP P A   +ATP +PRR  F
Sbjct:  186 GSDVLSFVLAVIFIVVPTSVVVASTMSGSRERDRNKKILLTVLQLRLVWEARDGLKKRRETRDYKTAKFVEACFEAAPQMLLQTVAVVSLWNDKETDNSDAFVAFSIMNSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFHVCEVGLRGLSLSMLALTLRGWSALVMAGVWGARVGIAKATEASDLKTTKVLIKALAACLLDSIWDSKSAYIAASVCTLLESSTFFVVASLELRGENTPLEEALSEVAWVAGSVYALRFVLDLWLRAPLHWGTLIDVED--LPSCWREGVSRLRGALFERRSPSATTMPAEPSPLATTPQATPLSPRRAGF 533

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BLAST of mRNA_L-elsbetiae_contig558.13895.1 vs. uniprot
Match: A0A6H5L3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3J2_9PHAE)

HSP 1 Score: 428 bits (1100), Expect = 6.880e-142
Identity = 252/419 (60.14%), Postives = 275/419 (65.63%), Query Frame = 0

Query:   92 EGLISKLGATKVQKFIMPGNRLADVDTAMLLLRRPLHNQADRGLLIFSLIAAYVDLGSDVGAAATFYLGSDFISFSLAVVFIVVPTSVMVANTMAAARGRDKNKKIFLTVFQLRLVWEARDGLAKRRETRDYKTAKFIEACFEAAPQMLLQTVALASLWNDKEAKSSDLFVAFSILNSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFHLCEVGLRGVSLALLALTLQGWAALVMLGVWGVRVTIARATEASDLKMTKVLIKALAACLLDSIWDSKPAYIIASVCTLVESSIFFVLASVRLRRGEGPLGGAVSDAAWATGSVYALRFALDVWLRAPLHWGSFFGAGD-PLSRSSWRGGVSRVRQVL-GKPPPLATR-PTEPPPSALATKATP-APRRLDF 506
            EGLI+ LGAT+VQK IMPGNRLADVDT                                                                                     LRLVWEARDGL K RETRDYKTAKF+EACFEAAPQMLLQTVA+ SLWNDKEA +SD+FVAFSI+NSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFH   VGLRG SLA+LALTL+GW+ALVM GVWG RV IA+ATEASDLK TKVLIKALAACLLDSIWDSK AYI ASVCTL+ESS FFV+AS+ LR    PL  A+S+ AW  GSVYALRF LD+WLRAPLHWG+     D P       GG+SR+R  L G+  P AT  P EPP      +ATP +PRR  F
Sbjct:  214 EGLIANLGATRVQKNIMPGNRLADVDT-------------------------------------------------------------------------------------LRLVWEARDGLKKGRETRDYKTAKFVEACFEAAPQMLLQTVAVVSLWNDKEADNSDMFVAFSIMNSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFH---VGLRGSSLAVLALTLRGWSALVMAGVWGARVAIAKATEASDLKTTKVLIKALAACLLDSIWDSKSAYIAASVCTLLESSTFFVVASLELRGENTPLEEALSEVAWVAGSVYALRFVLDLWLRAPLHWGTLIDVEDLPFCCG---GGISRLRGALFGRRSPSATTLPAEPPQLGTTPQATPMSPRRAGF 541

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig558.13895.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig558.13895.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FPC7_ECTSI	1.730e-169	74.86	Hypothetical leucine rich repeat protein n=1 Tax=E...	[more]
A0A6H5L3J2_9PHAE	6.880e-142	60.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 1..111 e-value: 2.1E-26 score: 94.5
IPR018629	XK-related protein	PFAM	PF09815	XK-related	coord: 136..406 e-value: 2.4E-17 score: 63.0
None	No IPR available	PANTHER	PTHR45631:SF19		coord: 5..67 coord: 40..193
None	No IPR available	PANTHER	PTHR45631	FAMILY NOT NAMED	coord: 5..67 coord: 40..193
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 159..163
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 164..186
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 330..351
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..133
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 187..259
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 352..387
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 410..506
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 260..278
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 298..318
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 388..409
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 279..297
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 134..158
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 319..329
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 3..118
None	No IPR available	TMHMM	TMhelix		coord: 387..409
None	No IPR available	TMHMM	TMhelix		coord: 166..188
None	No IPR available	TMHMM	TMhelix		coord: 134..156
None	No IPR available	TMHMM	TMhelix		coord: 327..349

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig558	contig	L-elsbetiae_contig558:14591..23615 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig558.13895.1	mRNA_L-elsbetiae_contig558.13895.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig558 13769..24044 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig558.13895.1 ID=prot_L-elsbetiae_contig558.13895.1|Name=mRNA_L-elsbetiae_contig558.13895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=507bp
MGCLVSLQLSHNDLEGVLPAEISKLSALVTLCLDHNRFCGPIPRGISGMK
ALNELRLDHNELTGRIPIGVGKMNSLKILSLSNNLLRGSMPEGLISKLGA
TKVQKFIMPGNRLADVDTAMLLLRRPLHNQADRGLLIFSLIAAYVDLGSD
VGAAATFYLGSDFISFSLAVVFIVVPTSVMVANTMAAARGRDKNKKIFLT
VFQLRLVWEARDGLAKRRETRDYKTAKFIEACFEAAPQMLLQTVALASLW
NDKEAKSSDLFVAFSILNSVFSVSWETMSALDRGWAEEMVEERARQGTSW
PCGASAHRWLVLLSLWVFHLCEVGLRGVSLALLALTLQGWAALVMLGVWG
VRVTIARATEASDLKMTKVLIKALAACLLDSIWDSKPAYIIASVCTLVES
SIFFVLASVRLRRGEGPLGGAVSDAAWATGSVYALRFALDVWLRAPLHWG
SFFGAGDPLSRSSWRGGVSRVRQVLGKPPPLATRPTEPPPSALATKATPA
PRRLDF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR018629	XK-rel