mRNA_L-elsbetiae_contig5575.13887.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5575.13887.1
Unique NamemRNA_L-elsbetiae_contig5575.13887.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5575.13887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5575contigL-elsbetiae_contig5575:61..448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size388
Cds size387
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816589.4343374-UTR-L-elsbetiae_contig5575:60..611622816589.4343374-UTR-L-elsbetiae_contig5575:60..61Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5575 61..61 +
1691683668.0565846-UTR-L-elsbetiae_contig5575:60..611691683668.0565846-UTR-L-elsbetiae_contig5575:60..61Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5575 61..61 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816589.446279-CDS-L-elsbetiae_contig5575:61..4481622816589.446279-CDS-L-elsbetiae_contig5575:61..448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5575 62..448 +
1691683668.075176-CDS-L-elsbetiae_contig5575:61..4481691683668.075176-CDS-L-elsbetiae_contig5575:61..448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5575 62..448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5575.13887.1prot_L-elsbetiae_contig5575.13887.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5575 62..448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5575.13887.1

>prot_L-elsbetiae_contig5575.13887.1 ID=prot_L-elsbetiae_contig5575.13887.1|Name=mRNA_L-elsbetiae_contig5575.13887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MSMLDRESLLSVVDTGQIIDSMHESDQPGGTEPLEQARQHPGASLGGFVV
QLETSERVQSSAEDPRSPFDSRGCASSYGGPAEDPRSTFDPGGRPCFQEQ
PKEDRRPSSHQPYFRCAARGASKCPRAI*
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mRNA from alignment at L-elsbetiae_contig5575:61..448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5575.13887.1 ID=mRNA_L-elsbetiae_contig5575.13887.1|Name=mRNA_L-elsbetiae_contig5575.13887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=388bp|location=Sequence derived from alignment at L-elsbetiae_contig5575:61..448+ (Laminarionema elsbetiae ELsaHSoW15)
GATGTCGATGCTGGATCGCGAATCTCTCCTCTCCGTGGTGGATACGGGTC
AGATCATCGACAGCATGCATGAGAGTGACCAGCCCGGCGGGACCGAACCA
CTGGAGCAAGCTAGACAGCACCCCGGTGCGTCGCTGGGGGGCTTTGTGGT
GCAGCTAGAAACCTCAGAGAGAGTTCAATCTTCGGCCGAGGACCCGCGTT
CTCCCTTTGACTCCAGAGGATGCGCGAGCTCCTACGGAGGACCCGCCGAA
GACCCGCGCTCTACCTTCGATCCCGGAGGACGCCCGTGCTTCCAAGAGCA
ACCCAAGGAGGATCGGCGTCCTTCCTCCCATCAACCGTACTTCCGGTGTG
CCGCGCGAGGGGCTTCGAAGTGCCCAAGAGCAATATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5575:61..448+

>mRNA_L-elsbetiae_contig5575.13887.1 ID=mRNA_L-elsbetiae_contig5575.13887.1|Name=mRNA_L-elsbetiae_contig5575.13887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig5575:61..448+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGATGCTGGATCGCGAATCTCTCCTCTCCGTGGTGGATACGGGTCA
GATCATCGACAGCATGCATGAGAGTGACCAGCCCGGCGGGACCGAACCAC
TGGAGCAAGCTAGACAGCACCCCGGTGCGTCGCTGGGGGGCTTTGTGGTG
CAGCTAGAAACCTCAGAGAGAGTTCAATCTTCGGCCGAGGACCCGCGTTC
TCCCTTTGACTCCAGAGGATGCGCGAGCTCCTACGGAGGACCCGCCGAAG
ACCCGCGCTCTACCTTCGATCCCGGAGGACGCCCGTGCTTCCAAGAGCAA
CCCAAGGAGGATCGGCGTCCTTCCTCCCATCAACCGTACTTCCGGTGTGC
CGCGCGAGGGGCTTCGAAGTGCCCAAGAGCAATATAAATGTCGATGCTGG
ATCGCGAATCTCTCCTCTCCGTGGTGGATACGGGTCAGATCATCGACAGC
ATGCATGAGAGTGACCAGCCCGGCGGGACCGAACCACTGGAGCAAGCTAG
ACAGCACCCCGGTGCGTCGCTGGGGGGCTTTGTGGTGCAGCTAGAAACCT
CAGAGAGAGTTCAATCTTCGGCCGAGGACCCGCGTTCTCCCTTTGACTCC
AGAGGATGCGCGAGCTCCTACGGAGGACCCGCCGAAGACCCGCGCTCTAC
CTTCGATCCCGGAGGACGCCCGTGCTTCCAAGAGCAACCCAAGGAGGATC
GGCGTCCTTCCTCCCATCAACCGTACTTCCGGTGTGCCGCGCGAGGGGCT
TCGAAGTGCCCAAGAGCAATATAA
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