mRNA_L-elsbetiae_contig5565.13875.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5565.13875.1
Unique NamemRNA_L-elsbetiae_contig5565.13875.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5565.13875.1 vs. uniprot
Match: D8LTF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTF9_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 2.160e-73
Identity = 193/391 (49.36%), Postives = 223/391 (57.03%), Query Frame = 1 
Query:    1 WQETDYRDFRINFIQFMRTPPAAVADA---PELVPVEIVAESKSAPDEDEEKAQQNS--VQQPVVADPAMYEGAREAEKVCAWPVQEEEEDXPADAXXXXXXXXXXXXXXXXXXXXXSEDPARF----DGGESDESIETAAAISCAAVAPPSPAMSASLRNGNDSSAGGFSARDGDGDDCPVAAAAAAESLLTNGGAWEAQETNRRGCA-----DSSTCSLGWSSVDDEGNDADEXXXXXXXPDYD------GNSIRMGRSFSNLETARRGGAG-------LSAVVQGGGDASDGDDESSXSDGADSEADGRGSRPRALSLDGWFTCGLENGVDTKTYETHDHAGRLRDLVLLAPIPAVCATPPT-DSAPDQQVELNAALRRLGVAFNVSV 1089
            WQETDYRDFRINFIQFMR+PPAA A A   PELVPVEIVAESKS+ DE+  K       VQQPVV D A+YE AR  EKV AWPVQ E E     +                       +P       DGGESDE +ETAA ISC   +   P +S      + +                     A  + +  G   + +E  R G        S +CSLGWSS D EGN ADE  XXXXX          GN+IR+ R+FSNLETARRGG         L+A+V    D+SDG D   X  G+    D    RPRALSLDGWFTCGLENGV+ K+YETHDHAGRLRDLV LAP+PAVC TPP  D+  +Q+V+LN ALRRLGV FNVSV
Sbjct:  159 WQETDYRDFRINFIQFMRSPPAAAAAAGEGPELVPVEIVAESKSSQDEEXGKVXXXXXXVQQPVVVDAAVYEDARATEKVRAWPVQSEPELALPPSGLLAKPSSASLSDSDTSPPTPPSEPGTLTSPSDGGESDEPVETAADISCCPASSSLPPVSQEPLPPSLTYEXXXXXXXXXXXXXXXXXXXAPAADIAKGRWQDDEEVERAGSGVQHGGSSPSCSLGWSSPD-EGNTADEDGXXXXXXXXXXXXXXXGNTIRVRRAFSNLETARRGGXXXXXXXXXLTALVSVD-DSSDGGDXXXXXXGSGRHHD----RPRALSLDGWFTCGLENGVNAKSYETHDHAGRLRDLVKLAPLPAVCPTPPLMDANANQEVDLNDALRRLGVTFNVSV 543
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BLAST of mRNA_L-elsbetiae_contig5565.13875.1 vs. uniprot
Match: A0A6H5JK69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK69_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 7.330e-61
Identity = 187/398 (46.98%), Postives = 216/398 (54.27%), Query Frame = 1 
Query:    1 WQETDYRDFRINFIQFMRTPPAAVA---DAPELVPVEIVAESKSAPDEDEEKAQQNS--VQQPVVADPAMYEGAREAEKVCAWPVQEEEEDX--PADAXXXXXXXXXXXXXXXXXXXXXSEDPA----------RFDGGESDESIETAAAISC----AAVAPPSPAMSASLRNGNDSSAGGFSARDGDGDDCPVAAAAAAESLLTNGGAWEAQETNRRGCA------DSSTCSLGWSSVDDEGNDADEXXXXXXXPDYDGNSIRMGRSFSNLETARRGG-------AGLSAVVQGGGDASDGDDESSXSDGADSEADGRGSRPRALSLDGWFTCGLENGVDTKTYETHDHAGRLRDLVLLAPIPAVCATPPT-DSAPDQQVELNAALRRLGVAFNVSV 1089
            WQETDYRDFRINFIQFMRTPPAA A   ++PELVPVEIVAESKS+              VQQPVV D A+YE AR  EKV AWPV+ E E    P+              XXXXXXXXX+  P             DGGESDES+ETAA ISC    +++ P SP          + S    S+           +  AA+  +   G W+  E   RG +       S +CSLGWSS D EGN ADE     XX                               +GLSA+V G  D+SDG     X         G   RPRALSLDGWFTCGLENGV+ K+YETHDHAGRLRDLV LAP+PAVC TPP  D+  +Q+V+LN ALRRLGV FNVSV
Sbjct:  155 WQETDYRDFRINFIQFMRTPPAAAAAAGESPELVPVEIVAESKSSXXXXXXXXXXXXXXVQQPVVVDAAVYEDARATEKVRAWPVESEPELALPPSGLLAKQSSATSPSSXXXXXXXXXTSPPTPASEPGTLTTSSDGGESDESVETAADISCCPALSSLPPVSPEPLPPSSTYEEQSVTSLSST--------TTSVPAADIAM---GRWQDDEEVERGGSGVQHGGSSPSCSLGWSSTD-EGNTADEDGEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGLSALVSGD-DSSDGXXXXXXXX----XXGGHHDRPRALSLDGWFTCGLENGVNAKSYETHDHAGRLRDLVKLAPLPAVCPTPPLMDANANQEVDLNDALRRLGVTFNVSV 535
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5565.13875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTF9_ECTSI2.160e-7349.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK69_9PHAE7.330e-6146.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5565contigL-elsbetiae_contig5565:10500..12006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_006190.1
Exons3
Model size1089
Cds size1089
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5565.13875.1prot_L-elsbetiae_contig5565.13875.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5565 10500..12006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816587.8643475-CDS-L-elsbetiae_contig5565:10499..106101622816587.8643475-CDS-L-elsbetiae_contig5565:10499..10610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5565 10500..10610 -
1691683666.9584324-CDS-L-elsbetiae_contig5565:10499..106101691683666.9584324-CDS-L-elsbetiae_contig5565:10499..10610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5565 10500..10610 -
1622816587.8782828-CDS-L-elsbetiae_contig5565:10959..116611622816587.8782828-CDS-L-elsbetiae_contig5565:10959..11661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5565 10960..11661 -
1691683666.9682844-CDS-L-elsbetiae_contig5565:10959..116611691683666.9682844-CDS-L-elsbetiae_contig5565:10959..11661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5565 10960..11661 -
1622816587.8908877-CDS-L-elsbetiae_contig5565:11730..120061622816587.8908877-CDS-L-elsbetiae_contig5565:11730..12006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5565 11731..12006 -
1691683666.9783537-CDS-L-elsbetiae_contig5565:11730..120061691683666.9783537-CDS-L-elsbetiae_contig5565:11730..12006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5565 11731..12006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5565.13875.1

>prot_L-elsbetiae_contig5565.13875.1 ID=prot_L-elsbetiae_contig5565.13875.1|Name=mRNA_L-elsbetiae_contig5565.13875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=363bp
WQETDYRDFRINFIQFMRTPPAAVADAPELVPVEIVAESKSAPDEDEEKA
QQNSVQQPVVADPAMYEGAREAEKVCAWPVQEEEEDEPADAVKSMSSSSL
SDSDDTSPPTPPSEDPARFDGGESDESIETAAAISCAAVAPPSPAMSASL
RNGNDSSAGGFSARDGDGDDCPVAAAAAAESLLTNGGAWEAQETNRRGCA
DSSTCSLGWSSVDDEGNDADEEQEQEEEPDYDGNSIRMGRSFSNLETARR
GGAGLSAVVQGGGDASDGDDESSSSDGADSEADGRGSRPRALSLDGWFTC
GLENGVDTKTYETHDHAGRLRDLVLLAPIPAVCATPPTDSAPDQQVELNA
ALRRLGVAFNVSV
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mRNA from alignment at L-elsbetiae_contig5565:10500..12006-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5565.13875.1 ID=mRNA_L-elsbetiae_contig5565.13875.1|Name=mRNA_L-elsbetiae_contig5565.13875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1507bp|location=Sequence derived from alignment at L-elsbetiae_contig5565:10500..12006- (Laminarionema elsbetiae ELsaHSoW15)
TGGCAGGAGACGGACTACCGCGACTTTCGCATCAACTTCATCCAGTTCAT
GAGGACGCCGCCCGCCGCCGTGGCGGACGCGCCGGAGCTGGTGCCCGTCG
AGATTGTTGCCGAGTCCAAGTCCGCCCCGGACGAGGACGAAGAGAAGGCA
CAGCAGAACAGCGTTCAGCAGCCTGTGGTGGCCGACCCGGCGATGTACGA
GGGCGCGCGAGAGGCGGAAAAGGTGTGCGCGTGGCCCGTGCAGGAGGAGG
AGGAGGATGAACCCGCAGACGCCGTTGTAGCGTCCAACGCCGCCGCCGCC
GCCGTAGCAGCGGTCGTGGTCGTAACAACCTCGGAACAACCCAAGAAGTC
CATGTCGTCGTCCAGCCTGTCGGACTCGGACGACACCTCGCCGCCCACAC
CTCCGTCCGAAGATCCCGCCAGATTCGACGGCGGTGAGAGCGACGAGTCC
ATCGAGACGGCCGCCGCTATTTCTTGCGCCGCCGTCGCGCCGCCGTCCCC
GGCGATGTCGGCGTCGCTGCGCAATGGCAACGACTCGAGCGCGGGCGGTT
TCTCGGCCCGCGACGGAGACGGCGACGACTGCCCGGTGGCAGCAGCAGCA
GCAGCCGAGAGTCTGTTGACAAATGGCGGGGCCTGGGAAGCACAAGAGAC
CAACCGCCGCGGCTGCGCAGACAGCAGTACCTGCAGCCTGGGGTGGTCCT
CCGTGGACGACGAGGGCAACGACGCGGACGAGGAGCAGGAGCAGGAGGAA
GAGCCGGACTACGACGGGAACAGCATCCGCATGGGGCGGTCTTTCTCGAA
CCTGGAGACGGCGCGGCGGGGCGGCGCCGGCCTGAGCGCGGTCGTGCAGG
GGGGCGGCGACGCGAGCGACGGCGACGACGAGAGCAGCAGCAGCGACGGC
GCCGACAGTGAGGCGGATGGCCGGGGAAGCCGGCCGCGGGCGCTCTCGCT
GGACGGCTGGTTCACCTGCGGGCTTGAGAACGGGGTGGACACCAAGACGT
ACGAGACGCACGACCACGCCGGACGGCTCCGCGACCTCGTCCTGTTGGTG
AGTTATTTAGTTAATTCACGATGTCATATTTTTCTCCCTCTTCTTACGAT
GTATCTGGGAACCAGCGTGTGCGGCATTTGCCGCAAATTACGCTGCTCTT
GCCTTCCTTGTTGCCCTCCTCCCCCGGCGATATGACAGACGATGCTGCTG
TGACAGCAGTAGTCCGTCCGTCCGCCTGTCTGCGCTATTTAGCGCGATCG
TGCGCGCACTGAGCTTGATCGTGTTGTGTGTATGTATATATACAAAAAAG
CTCTCTAGTTCCACAACCCGTTTCCAACCTCTTTGTACGTACATAACGTT
CGTTTTTTTTTCCTCTCGGTCTGGCATCGATCGCTCCTCCCGTCAGGCTC
CAATCCCGGCGGTCTGCGCCACGCCGCCAACGGACTCGGCGCCGGACCAA
CAAGTCGAACTCAACGCCGCGCTCCGGCGACTAGGCGTTGCGTTCAACGT
CAGCGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5565:10500..12006-

>mRNA_L-elsbetiae_contig5565.13875.1 ID=mRNA_L-elsbetiae_contig5565.13875.1|Name=mRNA_L-elsbetiae_contig5565.13875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2178bp|location=Sequence derived from alignment at L-elsbetiae_contig5565:10500..12006- (Laminarionema elsbetiae ELsaHSoW15)
TGGCAGGAGACGGACTACCGCGACTTTCGCATCAACTTCATCCAGTTCAT
GAGGACGCCGCCCGCCGCCGTGGCGGACGCGCCGGAGCTGGTGCCCGTCG
AGATTGTTGCCGAGTCCAAGTCCGCCCCGGACGAGGACGAAGAGAAGGCA
CAGCAGAACAGCGTTCAGCAGCCTGTGGTGGCCGACCCGGCGATGTACGA
GGGCGCGCGAGAGGCGGAAAAGGTGTGCGCGTGGCCCGTGCAGGAGGAGG
AGGAGGATGAACCCGCAGACGCCGTTTGGCAGGAGACGGACTACCGCGAC
TTTCGCATCAACTTCATCCAGTTCATGAGGACGCCGCCCGCCGCCGTGGC
GGACGCGCCGGAGCTGGTGCCCGTCGAGATTGTTGCCGAGTCCAAGTCCG
CCCCGGACGAGGACGAAGAGAAGGCACAGCAGAACAGCGTTCAGCAGCCT
GTGGTGGCCGACCCGGCGATGTACGAGGGCGCGCGAGAGGCGGAAAAGGT
GTGCGCGTGGCCCGTGCAGGAGGAGGAGGAGGATGAACCCGCAGACGCCG
TTAAGTCCATGTCGTCGTCCAGCCTGTCGGACTCGGACGACACCTCGCCG
CCCACACCTCCGTCCGAAGATCCCGCCAGATTCGACGGCGGTGAGAGCGA
CGAGTCCATCGAGACGGCCGCCGCTATTTCTTGCGCCGCCGTCGCGCCGC
CGTCCCCGGCGATGTCGGCGTCGCTGCGCAATGGCAACGACTCGAGCGCG
GGCGGTTTCTCGGCCCGCGACGGAGACGGCGACGACTGCCCGGTGGCAGC
AGCAGCAGCAGCCGAGAGTCTGTTGACAAATGGCGGGGCCTGGGAAGCAC
AAGAGACCAACCGCCGCGGCTGCGCAGACAGCAGTACCTGCAGCCTGGGG
TGGTCCTCCGTGGACGACGAGGGCAACGACGCGGACGAGGAGCAGGAGCA
GGAGGAAGAGCCGGACTACGACGGGAACAGCATCCGCATGGGGCGGTCTT
TCTCGAACCTGGAGACGGCGCGGCGGGGCGGCGCCGGCCTGAGCGCGGTC
GTGCAGGGGGGCGGCGACGCGAGCGACGGCGACGACGAGAGCAGCAGCAG
CGACGGCGCCGACAGTGAGGCGGATGGCCGGGGAAGCCGGCCGCGGGCGC
TCTCGCTGGACGGCTGGTTCACCTGCGGGCTTGAGAACGGGGTGGACACC
AAGACGTACGAGACGCACGACCACGCCGGACGGCTCCGCGACCTCGTCCT
GTTGAAGTCCATGTCGTCGTCCAGCCTGTCGGACTCGGACGACACCTCGC
CGCCCACACCTCCGTCCGAAGATCCCGCCAGATTCGACGGCGGTGAGAGC
GACGAGTCCATCGAGACGGCCGCCGCTATTTCTTGCGCCGCCGTCGCGCC
GCCGTCCCCGGCGATGTCGGCGTCGCTGCGCAATGGCAACGACTCGAGCG
CGGGCGGTTTCTCGGCCCGCGACGGAGACGGCGACGACTGCCCGGTGGCA
GCAGCAGCAGCAGCCGAGAGTCTGTTGACAAATGGCGGGGCCTGGGAAGC
ACAAGAGACCAACCGCCGCGGCTGCGCAGACAGCAGTACCTGCAGCCTGG
GGTGGTCCTCCGTGGACGACGAGGGCAACGACGCGGACGAGGAGCAGGAG
CAGGAGGAAGAGCCGGACTACGACGGGAACAGCATCCGCATGGGGCGGTC
TTTCTCGAACCTGGAGACGGCGCGGCGGGGCGGCGCCGGCCTGAGCGCGG
TCGTGCAGGGGGGCGGCGACGCGAGCGACGGCGACGACGAGAGCAGCAGC
AGCGACGGCGCCGACAGTGAGGCGGATGGCCGGGGAAGCCGGCCGCGGGC
GCTCTCGCTGGACGGCTGGTTCACCTGCGGGCTTGAGAACGGGGTGGACA
CCAAGACGTACGAGACGCACGACCACGCCGGACGGCTCCGCGACCTCGTC
CTGTTGGCTCCAATCCCGGCGGTCTGCGCCACGCCGCCAACGGACTCGGC
GCCGGACCAACAAGTCGAACTCAACGCCGCGCTCCGGCGACTAGGCGTTG
CGTTCAACGTCAGCGTCGCTCCAATCCCGGCGGTCTGCGCCACGCCGCCA
ACGGACTCGGCGCCGGACCAACAAGTCGAACTCAACGCCGCGCTCCGGCG
ACTAGGCGTTGCGTTCAACGTCAGCGTC
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