Homology
BLAST of mRNA_L-elsbetiae_contig5565.13875.1 vs. uniprot
Match:
D8LTF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTF9_ECTSI)
HSP 1 Score: 248 bits (634), Expect = 2.160e-73
Identity = 193/391 (49.36%), Postives = 223/391 (57.03%), Query Frame = 1
Query: 1 WQETDYRDFRINFIQFMRTPPAAVADA---PELVPVEIVAESKSAPDEDEEKAQQNS--VQQPVVADPAMYEGAREAEKVCAWPVQEEEEDXPADAXXXXXXXXXXXXXXXXXXXXXSEDPARF----DGGESDESIETAAAISCAAVAPPSPAMSASLRNGNDSSAGGFSARDGDGDDCPVAAAAAAESLLTNGGAWEAQETNRRGCA-----DSSTCSLGWSSVDDEGNDADEXXXXXXXPDYD------GNSIRMGRSFSNLETARRGGAG-------LSAVVQGGGDASDGDDESSXSDGADSEADGRGSRPRALSLDGWFTCGLENGVDTKTYETHDHAGRLRDLVLLAPIPAVCATPPT-DSAPDQQVELNAALRRLGVAFNVSV 1089
WQETDYRDFRINFIQFMR+PPAA A A PELVPVEIVAESKS+ DE+ K VQQPVV D A+YE AR EKV AWPVQ E E + +P DGGESDE +ETAA ISC + P +S + + A + + G + +E R G S +CSLGWSS D EGN ADE XXXXX GN+IR+ R+FSNLETARRGG L+A+V D+SDG D X G+ D RPRALSLDGWFTCGLENGV+ K+YETHDHAGRLRDLV LAP+PAVC TPP D+ +Q+V+LN ALRRLGV FNVSV
Sbjct: 159 WQETDYRDFRINFIQFMRSPPAAAAAAGEGPELVPVEIVAESKSSQDEEXGKVXXXXXXVQQPVVVDAAVYEDARATEKVRAWPVQSEPELALPPSGLLAKPSSASLSDSDTSPPTPPSEPGTLTSPSDGGESDEPVETAADISCCPASSSLPPVSQEPLPPSLTYEXXXXXXXXXXXXXXXXXXXAPAADIAKGRWQDDEEVERAGSGVQHGGSSPSCSLGWSSPD-EGNTADEDGXXXXXXXXXXXXXXXGNTIRVRRAFSNLETARRGGXXXXXXXXXLTALVSVD-DSSDGGDXXXXXXGSGRHHD----RPRALSLDGWFTCGLENGVNAKSYETHDHAGRLRDLVKLAPLPAVCPTPPLMDANANQEVDLNDALRRLGVTFNVSV 543
BLAST of mRNA_L-elsbetiae_contig5565.13875.1 vs. uniprot
Match:
A0A6H5JK69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK69_9PHAE)
HSP 1 Score: 215 bits (548), Expect = 7.330e-61
Identity = 187/398 (46.98%), Postives = 216/398 (54.27%), Query Frame = 1
Query: 1 WQETDYRDFRINFIQFMRTPPAAVA---DAPELVPVEIVAESKSAPDEDEEKAQQNS--VQQPVVADPAMYEGAREAEKVCAWPVQEEEEDX--PADAXXXXXXXXXXXXXXXXXXXXXSEDPA----------RFDGGESDESIETAAAISC----AAVAPPSPAMSASLRNGNDSSAGGFSARDGDGDDCPVAAAAAAESLLTNGGAWEAQETNRRGCA------DSSTCSLGWSSVDDEGNDADEXXXXXXXPDYDGNSIRMGRSFSNLETARRGG-------AGLSAVVQGGGDASDGDDESSXSDGADSEADGRGSRPRALSLDGWFTCGLENGVDTKTYETHDHAGRLRDLVLLAPIPAVCATPPT-DSAPDQQVELNAALRRLGVAFNVSV 1089
WQETDYRDFRINFIQFMRTPPAA A ++PELVPVEIVAESKS+ VQQPVV D A+YE AR EKV AWPV+ E E P+ XXXXXXXXX+ P DGGESDES+ETAA ISC +++ P SP + S S+ + AA+ + G W+ E RG + S +CSLGWSS D EGN ADE XX +GLSA+V G D+SDG X G RPRALSLDGWFTCGLENGV+ K+YETHDHAGRLRDLV LAP+PAVC TPP D+ +Q+V+LN ALRRLGV FNVSV
Sbjct: 155 WQETDYRDFRINFIQFMRTPPAAAAAAGESPELVPVEIVAESKSSXXXXXXXXXXXXXXVQQPVVVDAAVYEDARATEKVRAWPVESEPELALPPSGLLAKQSSATSPSSXXXXXXXXXTSPPTPASEPGTLTTSSDGGESDESVETAADISCCPALSSLPPVSPEPLPPSSTYEEQSVTSLSST--------TTSVPAADIAM---GRWQDDEEVERGGSGVQHGGSSPSCSLGWSSTD-EGNTADEDGEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGLSALVSGD-DSSDGXXXXXXXX----XXGGHHDRPRALSLDGWFTCGLENGVNAKSYETHDHAGRLRDLVKLAPLPAVCPTPPLMDANANQEVDLNDALRRLGVTFNVSV 535
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5565.13875.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.16e-73 / Id = 49.36 Expect = 7.33e-61 / Id = 46.98 Sequence D8LTF9_ECTSI A0A6H5JK69_9PHAE
Match Name E-value Identity Description
D8LTF9_ECTSI 2.160e-73 49.36 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK69_9PHAE 7.330e-61 46.98 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Ec32 ortholog description expressed unknown protein
Ec32 ortholog Ec-02_006190.1
Exons 3
Model size 1089
Cds size 1089
Stop 0
Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816587.8643475-CDS-L-elsbetiae_contig5565:10499..10610 1622816587.8643475-CDS-L-elsbetiae_contig5565:10499..10610 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5565 10500..10610 -
1691683666.9584324-CDS-L-elsbetiae_contig5565:10499..10610 1691683666.9584324-CDS-L-elsbetiae_contig5565:10499..10610 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5565 10500..10610 -
1622816587.8782828-CDS-L-elsbetiae_contig5565:10959..11661 1622816587.8782828-CDS-L-elsbetiae_contig5565:10959..11661 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5565 10960..11661 -
1691683666.9682844-CDS-L-elsbetiae_contig5565:10959..11661 1691683666.9682844-CDS-L-elsbetiae_contig5565:10959..11661 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5565 10960..11661 -
1622816587.8908877-CDS-L-elsbetiae_contig5565:11730..12006 1622816587.8908877-CDS-L-elsbetiae_contig5565:11730..12006 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5565 11731..12006 -
1691683666.9783537-CDS-L-elsbetiae_contig5565:11730..12006 1691683666.9783537-CDS-L-elsbetiae_contig5565:11730..12006 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5565 11731..12006 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5565.13875.1
>prot_L-elsbetiae_contig5565.13875.1 ID=prot_L-elsbetiae_contig5565.13875.1|Name=mRNA_L-elsbetiae_contig5565.13875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=363bp
WQETDYRDFRINFIQFMRTPPAAVADAPELVPVEIVAESKSAPDEDEEKA QQNSVQQPVVADPAMYEGAREAEKVCAWPVQEEEEDEPADAVKSMSSSSL SDSDDTSPPTPPSEDPARFDGGESDESIETAAAISCAAVAPPSPAMSASL RNGNDSSAGGFSARDGDGDDCPVAAAAAAESLLTNGGAWEAQETNRRGCA DSSTCSLGWSSVDDEGNDADEEQEQEEEPDYDGNSIRMGRSFSNLETARR GGAGLSAVVQGGGDASDGDDESSSSDGADSEADGRGSRPRALSLDGWFTC GLENGVDTKTYETHDHAGRLRDLVLLAPIPAVCATPPTDSAPDQQVELNA ALRRLGVAFNVSV back to top mRNA from alignment at L-elsbetiae_contig5565:10500..12006-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5565.13875.1 ID=mRNA_L-elsbetiae_contig5565.13875.1|Name=mRNA_L-elsbetiae_contig5565.13875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1507bp|location=Sequence derived from alignment at L-elsbetiae_contig5565:10500..12006- (Laminarionema elsbetiae ELsaHSoW15)TGGCAGGAGACGGACTACCGCGACTTTCGCATCAACTTCATCCAGTTCAT
GAGGACGCCGCCCGCCGCCGTGGCGGACGCGCCGGAGCTGGTGCCCGTCG
AGATTGTTGCCGAGTCCAAGTCCGCCCCGGACGAGGACGAAGAGAAGGCA
CAGCAGAACAGCGTTCAGCAGCCTGTGGTGGCCGACCCGGCGATGTACGA
GGGCGCGCGAGAGGCGGAAAAGGTGTGCGCGTGGCCCGTGCAGGAGGAGG
AGGAGGATGAACCCGCAGACGCCGTT GTAGCGTCCAACGCCGCCGCCGCC
GCCGTAGCAGCGGTCGTGGTCGTAACAACCTCGGAACAACCCAAGAAGTC
CATGTCGTCGTCCAGCCTGTCGGACTCGGACGACACCTCGCCGCCCACAC
CTCCGTCCGAAGATCCCGCCAGATTCGACGGCGGTGAGAGCGACGAGTCC
ATCGAGACGGCCGCCGCTATTTCTTGCGCCGCCGTCGCGCCGCCGTCCCC
GGCGATGTCGGCGTCGCTGCGCAATGGCAACGACTCGAGCGCGGGCGGTT
TCTCGGCCCGCGACGGAGACGGCGACGACTGCCCGGTGGCAGCAGCAGCA
GCAGCCGAGAGTCTGTTGACAAATGGCGGGGCCTGGGAAGCACAAGAGAC
CAACCGCCGCGGCTGCGCAGACAGCAGTACCTGCAGCCTGGGGTGGTCCT
CCGTGGACGACGAGGGCAACGACGCGGACGAGGAGCAGGAGCAGGAGGAA
GAGCCGGACTACGACGGGAACAGCATCCGCATGGGGCGGTCTTTCTCGAA
CCTGGAGACGGCGCGGCGGGGCGGCGCCGGCCTGAGCGCGGTCGTGCAGG
GGGGCGGCGACGCGAGCGACGGCGACGACGAGAGCAGCAGCAGCGACGGC
GCCGACAGTGAGGCGGATGGCCGGGGAAGCCGGCCGCGGGCGCTCTCGCT
GGACGGCTGGTTCACCTGCGGGCTTGAGAACGGGGTGGACACCAAGACGT
ACGAGACGCACGACCACGCCGGACGGCTCCGCGACCTCGTCCTGTTG GTG
AGTTATTTAGTTAATTCACGATGTCATATTTTTCTCCCTCTTCTTACGAT
GTATCTGGGAACCAGCGTGTGCGGCATTTGCCGCAAATTACGCTGCTCTT
GCCTTCCTTGTTGCCCTCCTCCCCCGGCGATATGACAGACGATGCTGCTG
TGACAGCAGTAGTCCGTCCGTCCGCCTGTCTGCGCTATTTAGCGCGATCG
TGCGCGCACTGAGCTTGATCGTGTTGTGTGTATGTATATATACAAAAAAG
CTCTCTAGTTCCACAACCCGTTTCCAACCTCTTTGTACGTACATAACGTT
CGTTTTTTTTTCCTCTCGGTCTGGCATCGATCGCTCCTCCCGTCAGGCTC
CAATCCCGGCGGTCTGCGCCACGCCGCCAACGGACTCGGCGCCGGACCAA
CAAGTCGAACTCAACGCCGCGCTCCGGCGACTAGGCGTTGCGTTCAACGT
CAGCGTC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5565:10500..12006-
>mRNA_L-elsbetiae_contig5565.13875.1 ID=mRNA_L-elsbetiae_contig5565.13875.1|Name=mRNA_L-elsbetiae_contig5565.13875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2178bp|location=Sequence derived from alignment at L-elsbetiae_contig5565:10500..12006- (Laminarionema elsbetiae ELsaHSoW15) TGGCAGGAGACGGACTACCGCGACTTTCGCATCAACTTCATCCAGTTCAT GAGGACGCCGCCCGCCGCCGTGGCGGACGCGCCGGAGCTGGTGCCCGTCG AGATTGTTGCCGAGTCCAAGTCCGCCCCGGACGAGGACGAAGAGAAGGCA CAGCAGAACAGCGTTCAGCAGCCTGTGGTGGCCGACCCGGCGATGTACGA GGGCGCGCGAGAGGCGGAAAAGGTGTGCGCGTGGCCCGTGCAGGAGGAGG AGGAGGATGAACCCGCAGACGCCGTTTGGCAGGAGACGGACTACCGCGAC TTTCGCATCAACTTCATCCAGTTCATGAGGACGCCGCCCGCCGCCGTGGC GGACGCGCCGGAGCTGGTGCCCGTCGAGATTGTTGCCGAGTCCAAGTCCG CCCCGGACGAGGACGAAGAGAAGGCACAGCAGAACAGCGTTCAGCAGCCT GTGGTGGCCGACCCGGCGATGTACGAGGGCGCGCGAGAGGCGGAAAAGGT GTGCGCGTGGCCCGTGCAGGAGGAGGAGGAGGATGAACCCGCAGACGCCG TTAAGTCCATGTCGTCGTCCAGCCTGTCGGACTCGGACGACACCTCGCCG CCCACACCTCCGTCCGAAGATCCCGCCAGATTCGACGGCGGTGAGAGCGA CGAGTCCATCGAGACGGCCGCCGCTATTTCTTGCGCCGCCGTCGCGCCGC CGTCCCCGGCGATGTCGGCGTCGCTGCGCAATGGCAACGACTCGAGCGCG GGCGGTTTCTCGGCCCGCGACGGAGACGGCGACGACTGCCCGGTGGCAGC AGCAGCAGCAGCCGAGAGTCTGTTGACAAATGGCGGGGCCTGGGAAGCAC AAGAGACCAACCGCCGCGGCTGCGCAGACAGCAGTACCTGCAGCCTGGGG TGGTCCTCCGTGGACGACGAGGGCAACGACGCGGACGAGGAGCAGGAGCA GGAGGAAGAGCCGGACTACGACGGGAACAGCATCCGCATGGGGCGGTCTT TCTCGAACCTGGAGACGGCGCGGCGGGGCGGCGCCGGCCTGAGCGCGGTC GTGCAGGGGGGCGGCGACGCGAGCGACGGCGACGACGAGAGCAGCAGCAG CGACGGCGCCGACAGTGAGGCGGATGGCCGGGGAAGCCGGCCGCGGGCGC TCTCGCTGGACGGCTGGTTCACCTGCGGGCTTGAGAACGGGGTGGACACC AAGACGTACGAGACGCACGACCACGCCGGACGGCTCCGCGACCTCGTCCT GTTGAAGTCCATGTCGTCGTCCAGCCTGTCGGACTCGGACGACACCTCGC CGCCCACACCTCCGTCCGAAGATCCCGCCAGATTCGACGGCGGTGAGAGC GACGAGTCCATCGAGACGGCCGCCGCTATTTCTTGCGCCGCCGTCGCGCC GCCGTCCCCGGCGATGTCGGCGTCGCTGCGCAATGGCAACGACTCGAGCG CGGGCGGTTTCTCGGCCCGCGACGGAGACGGCGACGACTGCCCGGTGGCA GCAGCAGCAGCAGCCGAGAGTCTGTTGACAAATGGCGGGGCCTGGGAAGC ACAAGAGACCAACCGCCGCGGCTGCGCAGACAGCAGTACCTGCAGCCTGG GGTGGTCCTCCGTGGACGACGAGGGCAACGACGCGGACGAGGAGCAGGAG CAGGAGGAAGAGCCGGACTACGACGGGAACAGCATCCGCATGGGGCGGTC TTTCTCGAACCTGGAGACGGCGCGGCGGGGCGGCGCCGGCCTGAGCGCGG TCGTGCAGGGGGGCGGCGACGCGAGCGACGGCGACGACGAGAGCAGCAGC AGCGACGGCGCCGACAGTGAGGCGGATGGCCGGGGAAGCCGGCCGCGGGC GCTCTCGCTGGACGGCTGGTTCACCTGCGGGCTTGAGAACGGGGTGGACA CCAAGACGTACGAGACGCACGACCACGCCGGACGGCTCCGCGACCTCGTC CTGTTGGCTCCAATCCCGGCGGTCTGCGCCACGCCGCCAACGGACTCGGC GCCGGACCAACAAGTCGAACTCAACGCCGCGCTCCGGCGACTAGGCGTTG CGTTCAACGTCAGCGTCGCTCCAATCCCGGCGGTCTGCGCCACGCCGCCA ACGGACTCGGCGCCGGACCAACAAGTCGAACTCAACGCCGCGCTCCGGCG ACTAGGCGTTGCGTTCAACGTCAGCGTC back to top