mRNA_L-elsbetiae_contig547.13730.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig547.13730.1
Unique NamemRNA_L-elsbetiae_contig547.13730.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig547.13730.1 vs. uniprot
Match: D7FRM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRM1_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 3.100e-50
Identity = 133/238 (55.88%), Postives = 162/238 (68.07%), Query Frame = 1 
Query:  733 LPLLSPEQEILSNGIKMCRERLVPLRRRKSDVVGGGVRARASSNSSGSTGAPTSAGSESSLSKRRSSTSALRSSDMSRPSTTNSVNTARERGSSGRISRSSESGTGLAADQGHLKARLRVMEWKRRRAEEIKTQQEEQATLEQLQQAEAETEAARKLAAARAEEAEQRIAAGRESTAEAVRATESAEKWAKTSRQRERRRAEVYAINAVMRTSFEREFEAYSLEQETLTARAAAPASP 1446
            LPLLSPEQE+   G+   ++RL PL RRKSDV G     R S N S +   P S+G E SL++RRS+T      D SRPSTT++ NTARE   S R S SSE+ T   ADQ  LKARLRVMEWKRRRAEE+++QQEEQAT E                   AEEAE+RI A   ++A+AVRA+E+AE+WAK SR+RERRRAE+YAINAVMR +FE+EF+AYSLEQE    +A+AP  P
Sbjct:   85 LPLLSPEQELTGKGVGKLKQRLAPLHRRKSDVDG--RFRRRSRNLSSAQRKPASSGQEPSLARRRSTTP-----DASRPSTTSNTNTAREGVPSSRTSFSSETATDPGADQAQLKARLRVMEWKRRRAEELESQQEEQATQEHXXXXXXXXXXXXXXXXXXAEEAERRILAEHNNSADAVRASEAAERWAKASRERERRRAEIYAINAVMRAAFEKEFKAYSLEQENRVTQASAPDVP 315
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig547.13730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRM1_ECTSI3.100e-5055.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig547contigL-elsbetiae_contig547:16617..19713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002530.1
Exons5
Model size1638
Cds size1491
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig547.13730.1prot_L-elsbetiae_contig547.13730.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig547 16617..19566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816573.6781988-CDS-L-elsbetiae_contig547:16616..166741622816573.6781988-CDS-L-elsbetiae_contig547:16616..16674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 16617..16674 +
1691683656.9703035-CDS-L-elsbetiae_contig547:16616..166741691683656.9703035-CDS-L-elsbetiae_contig547:16616..16674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 16617..16674 +
1622816573.6933107-CDS-L-elsbetiae_contig547:17006..176781622816573.6933107-CDS-L-elsbetiae_contig547:17006..17678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 17007..17678 +
1691683656.9807148-CDS-L-elsbetiae_contig547:17006..176781691683656.9807148-CDS-L-elsbetiae_contig547:17006..17678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 17007..17678 +
1622816573.710908-CDS-L-elsbetiae_contig547:18172..185191622816573.710908-CDS-L-elsbetiae_contig547:18172..18519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 18173..18519 +
1691683656.9922016-CDS-L-elsbetiae_contig547:18172..185191691683656.9922016-CDS-L-elsbetiae_contig547:18172..18519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 18173..18519 +
1622816573.7220502-CDS-L-elsbetiae_contig547:18823..191101622816573.7220502-CDS-L-elsbetiae_contig547:18823..19110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 18824..19110 +
1691683657.0109088-CDS-L-elsbetiae_contig547:18823..191101691683657.0109088-CDS-L-elsbetiae_contig547:18823..19110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 18824..19110 +
1622816573.7325292-CDS-L-elsbetiae_contig547:19439..195661622816573.7325292-CDS-L-elsbetiae_contig547:19439..19566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 19440..19566 +
1691683657.02207-CDS-L-elsbetiae_contig547:19439..195661691683657.02207-CDS-L-elsbetiae_contig547:19439..19566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 19440..19566 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816573.742417-UTR-L-elsbetiae_contig547:19566..197131622816573.742417-UTR-L-elsbetiae_contig547:19566..19713Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig547 19567..19713 +
1691683657.0327454-UTR-L-elsbetiae_contig547:19566..197131691683657.0327454-UTR-L-elsbetiae_contig547:19566..19713Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig547 19567..19713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig547.13730.1

>prot_L-elsbetiae_contig547.13730.1 ID=prot_L-elsbetiae_contig547.13730.1|Name=mRNA_L-elsbetiae_contig547.13730.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=497bp
MALVTLKWPSASGRVDRASMMEAGIPRRRTLSSTNGRRQETPRDVIASRC
RTAKNISVSRSKSNFQPKPPPPQGRRRAEHNMSFQQGSKSTHVNTGLATT
QPRKSQPVPAPKPASSNNTVKAEIISISVPNIVRESTATVGLRLLSTDGC
SAGAPSSSAIIALNIPLSTNCLSSCRPTDEKSPLIGERVKSGCSTSETAG
SLANTTRSCWDERGGSVDTPADAASPPLPRYGSASSTGNKAATSLPLLSP
EQEILSNGIKMCRERLVPLRRRKSDVVGGGVRARASSNSSGSTGAPTSAG
SESSLSKRRSSTSALRSSDMSRPSTTNSVNTARERGSSGRISRSSESGTG
LAADQGHLKARLRVMEWKRRRAEEIKTQQEEQATLEQLQQAEAETEAARK
LAAARAEEAEQRIAAGRESTAEAVRATESAEKWAKTSRQRERRRAEVYAI
NAVMRTSFEREFEAYSLEQETLTARAAAPASPAQALTGKEASPQQQ*
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mRNA from alignment at L-elsbetiae_contig547:16617..19713+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig547.13730.1 ID=mRNA_L-elsbetiae_contig547.13730.1|Name=mRNA_L-elsbetiae_contig547.13730.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3097bp|location=Sequence derived from alignment at L-elsbetiae_contig547:16617..19713+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTTGGTTACTCTCAAGTGGCCTTCTGCATCGGGTCGGGTAGATCG
AGCCTCGAGTGGTGCATACTGTGGAGGTACGCACACGAGCGGCGATGGTA
AGAGGTTGCAGGTTGAAGCCCATCGACGAACTATGCAACCTAAATTAGCC
ACCTAAATATATTAAGCCGTTCATTGCTTTCTTTACAACGACTTGGGCAG
TGAGGATTTTACTTGCATGGACATAAGCTCAGCAGACTCTGTTCCTTTAC
TGGCAGTCTATCTAGATACGTACTTCGCCCGAGGTGAACAACTCGGTGCA
ACCGCTGCCTCGTTGATGGAATGACCCAACTTTTAATTGAGTTCGGCCGC
GTTGCATCCACCGCCCACAACATCCGCTCCATTTTTGCAGTGATGGAGGC
AGGCATCCCTCGACGACGAACATTGTCTAGTACCAACGGAAGACGGCAGG
AGACACCGCGAGATGTGATTGCGAGCAGGTGTAGAACGGCCAAGAACATA
AGTGTTTCCCGCTCCAAGTCAAATTTTCAACCTAAACCACCACCACCACA
AGGAAGACGTCGCGCCGAGCATAATATGAGCTTTCAGCAAGGATCAAAGA
GTACGCATGTCAACACAGGGCTAGCGACGACTCAACCTCGGAAAAGCCAG
CCAGTCCCAGCTCCGAAGCCAGCATCTTCGAACAACACCGTAAAGGCAGA
GATTATATCTATCTCTGTGCCGAACATTGTGCGAGAAAGTACTGCTACTG
TTGGTCTTCGCCTCCTTTCGACGGACGGTTGCTCCGCTGGTGCGCCTTCC
TCGTCGGCAATAATAGCGCTGAATATTCCCTTGAGCACCAATTGTTTATC
TTCGTGCCGGCCCACCGACGAGAAATCGCCCTTGATTGGAGAACGCGTCA
AGAGTGGTTGCTCAACATCAGAAACAGCGGGAAGTCTCGCCAACACAACT
CGAAGTTGTTGGGACGAAAGAGGAGGCAGTGTAGACACCCCAGCTGATGC
TGCTTCTCCACCGCTGCCGCGATATGGCTCAGCATCCTCCACAGGAAACA
AAGCAGCTACATGTCGGGTGCCAGAGGCCCACCAAAATGAGCCCCTACCA
CAGCAGCCAGGTCCGAGCAACAGTTTGACGCGGAGTCGAGGGTTGAAAGG
TCTTCGTCCGGGCTCAGGTAAGTAGGTCGGTTTATGCGCGTTCTTGCGGG
TGAGGACAGCGCATGCCCGACGCCCTGCCGGTGGGCCCGCCTCTCGGTGT
GCAGGTGCCGACAGCGTTCTGGGATGTTTAACGTCGTCACGTCTAACAAC
TCCGCGAAACTTTTTTTCCTACCCAGATTTTTTGTATCAATCATAAACAT
GTTTTATGCTGCCTGCATGCACATGTGATGTCGAAGAGCCCGAAGCTTTG
TGTATGTACTACTACCGATTCCGTTGGGGGATGAAAACTACCCAGAGTCT
TTTAATCGCAGATTGAGTGATATTAGAAGCTTGCTGCAAGAAACAACTCA
CTGCGTGGCTCACAGAATAATCCATCCATTATTTGCTGCGTCGTTCGCGC
CATCAGCGCTTCCACTACTCTCGCCAGAACAGGAGATTTTGAGCAATGGG
ATCAAGATGTGCAGGGAGCGTCTAGTGCCGTTGCGCCGAAGAAAATCGGA
TGTTGTGGGTGGCGGTGTCCGTGCGAGAGCCAGCAGCAATAGTAGTGGGA
GCACAGGTGCACCGACCTCAGCGGGAAGCGAATCGTCTCTCTCGAAAAGA
AGGAGCAGCACCTCCGCCCTAAGATCTTCAGACATGTCTCGACCAAGTAC
TACCAACAGCGTAAACACAGCACGTGAGCGGGGATCCAGTGGACGGATTT
CCCGCAGCAGTGAATCTGGGACAGGCCTGGCGGCTGATCAGGGTCATTTG
AAGGTATCATCCGGAAAACACTCACGTAGTTGGAAGGTGAACTTGACTAT
TTAGCTGTAAAATGCGCTAGAAAGCGACAGCGACTGAATAATTTTGGCCA
AACACCACGCTGCTGGAGTTCATGGGAATTTTCTCCGGCGAAGTTTGAGC
GGAACATTCGGGAAGCCAAGTATCAATTCGGCCTCATAGCTGTTTCTTTC
CCTGCGTTCATAGACAATTTCCTCGAAATGTGTTTGCCTTGGAAGTAAAA
ACGAGTGTCTGCAGAAAAAAAACTCCAGACCTTGTCGCTCAATCCCTTGC
TCTCAAGGCACGACTACGGGTGATGGAATGGAAAAGGCGGCGGGCAGAAG
AAATCAAAACCCAGCAAGAGGAGCAGGCTACCCTGGAGCAACTGCAGCAG
GCGGAGGCGGAAACGGAGGCGGCCAGAAAGCTAGCAGCCGCACGAGCTGA
AGAGGCCGAACAGCGAATTGCTGCTGGGCGTGAGAGTACGGCGGAGGCTG
TCCGAGCCACAGAAAGCGCCGAGAAGTGGGCGAAGACGTCACGTCAAAGA
GAAAGAAGGAGGGCAGAAGTGTACGCTATCAACGCGGTGATGAGGTGCGT
GAATGGCATTCGGGTAGCTTTTGCTCTGGCCGGGATGGGGCCATTTGCAG
GGCAAGAGCGGTGTGTCATCGACTCCTGTTTACTCCGCCAGGTGACACTT
TGGGTGGTCGTAAATGTCCTTCCGCATCCTAGGCTAAACATACGAGAGCG
CAATGCTTCGCTGGACGGCGATCACAACTTTTGTCCCCGAGTCTAAACTG
GTTTTCACGAGGGGGTTGATCGTGAATCGCCCGCGTCTGTGGGCCTAACT
TCGGGGAAAGAAGCATTGACTTTGTAGTTACATAGTCGCTCATGTGCTTT
CCGTCCACGAACCAAAACTCCAGGACATCCTTTGAAAGGGAGTTCGAGGC
ATACAGCTTGGAACAAGAAACACTTACGGCGCGGGCAGCGGCACCTGCTT
CCCCAGCCCAAGCTTTGACGGGAAAAGAGGCGTCTCCACAACAGCAGTAA
AGGTGCCAGGCTGTTGGCGCCTTGCACCGCCTTCTTTCTCTAGGCGAGAA
CAAGACCGCGTTTTTTTTGGGTTTCGTAGATTGCCCGGCACGCAAGCTGT
TGCAGCAGTTGTGTTTTTTGTGGACAAAAACAATTATTGAGGAAAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig547:16617..19713+

>mRNA_L-elsbetiae_contig547.13730.1 ID=mRNA_L-elsbetiae_contig547.13730.1|Name=mRNA_L-elsbetiae_contig547.13730.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2982bp|location=Sequence derived from alignment at L-elsbetiae_contig547:16617..19713+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTTGGTTACTCTCAAGTGGCCTTCTGCATCGGGTCGGGTAGATCG
AGCCTCGAATGGCCTTGGTTACTCTCAAGTGGCCTTCTGCATCGGGTCGG
GTAGATCGAGCCTCGATGATGGAGGCAGGCATCCCTCGACGACGAACATT
GTCTAGTACCAACGGAAGACGGCAGGAGACACCGCGAGATGTGATTGCGA
GCAGGTGTAGAACGGCCAAGAACATAAGTGTTTCCCGCTCCAAGTCAAAT
TTTCAACCTAAACCACCACCACCACAAGGAAGACGTCGCGCCGAGCATAA
TATGAGCTTTCAGCAAGGATCAAAGAGTACGCATGTCAACACAGGGCTAG
CGACGACTCAACCTCGGAAAAGCCAGCCAGTCCCAGCTCCGAAGCCAGCA
TCTTCGAACAACACCGTAAAGGCAGAGATTATATCTATCTCTGTGCCGAA
CATTGTGCGAGAAAGTACTGCTACTGTTGGTCTTCGCCTCCTTTCGACGG
ACGGTTGCTCCGCTGGTGCGCCTTCCTCGTCGGCAATAATAGCGCTGAAT
ATTCCCTTGAGCACCAATTGTTTATCTTCGTGCCGGCCCACCGACGAGAA
ATCGCCCTTGATTGGAGAACGCGTCAAGAGTGGTTGCTCAACATCAGAAA
CAGCGGGAAGTCTCGCCAACACAACTCGAAGTTGTTGGGACGAAAGAGGA
GGCAGTGTAGACACCCCAGCTGATGCTGCTTCTCCACCGCTGCCGCGATA
TGGCTCAGCATCCTCCACAGGAAACAAAGCAGCTACATTGATGGAGGCAG
GCATCCCTCGACGACGAACATTGTCTAGTACCAACGGAAGACGGCAGGAG
ACACCGCGAGATGTGATTGCGAGCAGGTGTAGAACGGCCAAGAACATAAG
TGTTTCCCGCTCCAAGTCAAATTTTCAACCTAAACCACCACCACCACAAG
GAAGACGTCGCGCCGAGCATAATATGAGCTTTCAGCAAGGATCAAAGAGT
ACGCATGTCAACACAGGGCTAGCGACGACTCAACCTCGGAAAAGCCAGCC
AGTCCCAGCTCCGAAGCCAGCATCTTCGAACAACACCGTAAAGGCAGAGA
TTATATCTATCTCTGTGCCGAACATTGTGCGAGAAAGTACTGCTACTGTT
GGTCTTCGCCTCCTTTCGACGGACGGTTGCTCCGCTGGTGCGCCTTCCTC
GTCGGCAATAATAGCGCTGAATATTCCCTTGAGCACCAATTGTTTATCTT
CGTGCCGGCCCACCGACGAGAAATCGCCCTTGATTGGAGAACGCGTCAAG
AGTGGTTGCTCAACATCAGAAACAGCGGGAAGTCTCGCCAACACAACTCG
AAGTTGTTGGGACGAAAGAGGAGGCAGTGTAGACACCCCAGCTGATGCTG
CTTCTCCACCGCTGCCGCGATATGGCTCAGCATCCTCCACAGGAAACAAA
GCAGCTACATCGCTTCCACTACTCTCGCCAGAACAGGAGATTTTGAGCAA
TGGGATCAAGATGTGCAGGGAGCGTCTAGTGCCGTTGCGCCGAAGAAAAT
CGGATGTTGTGGGTGGCGGTGTCCGTGCGAGAGCCAGCAGCAATAGTAGT
GGGAGCACAGGTGCACCGACCTCAGCGGGAAGCGAATCGTCTCTCTCGAA
AAGAAGGAGCAGCACCTCCGCCCTAAGATCTTCAGACATGTCTCGACCAA
GTACTACCAACAGCGTAAACACAGCACGTGAGCGGGGATCCAGTGGACGG
ATTTCCCGCAGCAGTGAATCTGGGACAGGCCTGGCGGCTGATCAGGGTCA
TTTGAAGCGCTTCCACTACTCTCGCCAGAACAGGAGATTTTGAGCAATGG
GATCAAGATGTGCAGGGAGCGTCTAGTGCCGTTGCGCCGAAGAAAATCGG
ATGTTGTGGGTGGCGGTGTCCGTGCGAGAGCCAGCAGCAATAGTAGTGGG
AGCACAGGTGCACCGACCTCAGCGGGAAGCGAATCGTCTCTCTCGAAAAG
AAGGAGCAGCACCTCCGCCCTAAGATCTTCAGACATGTCTCGACCAAGTA
CTACCAACAGCGTAAACACAGCACGTGAGCGGGGATCCAGTGGACGGATT
TCCCGCAGCAGTGAATCTGGGACAGGCCTGGCGGCTGATCAGGGTCATTT
GAAGGCACGACTACGGGTGATGGAATGGAAAAGGCGGCGGGCAGAAGAAA
TCAAAACCCAGCAAGAGGAGCAGGCTACCCTGGAGCAACTGCAGCAGGCG
GAGGCGGAAACGGAGGCGGCCAGAAAGCTAGCAGCCGCACGAGCTGAAGA
GGCCGAACAGCGAATTGCTGCTGGGCGTGAGAGTACGGCGGAGGCTGTCC
GAGCCACAGAAAGCGCCGAGAAGTGGGCGAAGACGTCACGTCAAAGAGAA
AGAAGGAGGGCAGAAGTGTACGCTATCAACGCGGTGATGAGGCACGACTA
CGGGTGATGGAATGGAAAAGGCGGCGGGCAGAAGAAATCAAAACCCAGCA
AGAGGAGCAGGCTACCCTGGAGCAACTGCAGCAGGCGGAGGCGGAAACGG
AGGCGGCCAGAAAGCTAGCAGCCGCACGAGCTGAAGAGGCCGAACAGCGA
ATTGCTGCTGGGCGTGAGAGTACGGCGGAGGCTGTCCGAGCCACAGAAAG
CGCCGAGAAGTGGGCGAAGACGTCACGTCAAAGAGAAAGAAGGAGGGCAG
AAGTGTACGCTATCAACGCGGTGATGAGGACATCCTTTGAAAGGGAGTTC
GAGGCATACAGCTTGGAACAAGAAACACTTACGGCGCGGGCAGCGGCACC
TGCTTCCCCAGCCCAAGCTTTGACGGGAAAAGAGGCGTCTCCACAACAGC
AGTAAGACATCCTTTGAAAGGGAGTTCGAGGCATACAGCTTGGAACAAGA
AACACTTACGGCGCGGGCAGCGGCACCTGCTTCCCCAGCCCAAGCTTTGA
CGGGAAAAGAGGCGTCTCCACAACAGCAGTAA
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