mRNA_L-elsbetiae_contig5454.13711.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5454.13711.1
Unique NamemRNA_L-elsbetiae_contig5454.13711.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5454.13711.1 vs. uniprot
Match: D7G5J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J9_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.670e-14
Identity = 31/94 (32.98%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:    1 EDCVKVWEAWSHTIYTGTRGGVVLTSHHDVLDHGYPDREVFQSLSTSLRSQGTPCLVKGKVSYDGVGSSTIRHMSSWLYAKELGCDWIAPDFNQ 282
            EDC+ VW  ++ T++             +      PD +++   +  LR  G+PCLV    + DG GS+TIRH+++W++++E+GCDW+ PD+ +
Sbjct:  120 EDCLHVWNDFNDTVW-------------EQFHPRMPDADLWIDTAEELRRAGSPCLVGSIPNGDGAGSTTIRHLATWIFSREMGCDWVTPDWGK 200
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5454.13711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5J9_ECTSI1.670e-1432.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5454contigL-elsbetiae_contig5454:9165..9447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size284
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816571.8311198-CDS-L-elsbetiae_contig5454:9164..94461622816571.8311198-CDS-L-elsbetiae_contig5454:9164..9446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5454 9165..9446 +
1691683655.7471378-CDS-L-elsbetiae_contig5454:9164..94461691683655.7471378-CDS-L-elsbetiae_contig5454:9164..9446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5454 9165..9446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5454.13711.1prot_L-elsbetiae_contig5454.13711.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5454 9165..9446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5454.13711.1

>prot_L-elsbetiae_contig5454.13711.1 ID=prot_L-elsbetiae_contig5454.13711.1|Name=mRNA_L-elsbetiae_contig5454.13711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
EDCVKVWEAWSHTIYTGTRGGVVLTSHHDVLDHGYPDREVFQSLSTSLRS
QGTPCLVKGKVSYDGVGSSTIRHMSSWLYAKELGCDWIAPDFNQ
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mRNA from alignment at L-elsbetiae_contig5454:9165..9447+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5454.13711.1 ID=mRNA_L-elsbetiae_contig5454.13711.1|Name=mRNA_L-elsbetiae_contig5454.13711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=283bp|location=Sequence derived from alignment at L-elsbetiae_contig5454:9165..9447+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGACTGTGTCAAGGTCTGGGAAGCGTGGTCCCACACGATCTACACCGG
TACTCGAGGTGGGGTGGTTCTAACCTCACACCACGACGTTCTTGATCATG
GCTACCCCGACCGGGAAGTGTTTCAGTCGCTATCCACCTCGCTACGAAGC
CAAGGAACGCCCTGCCTGGTGAAGGGAAAGGTGTCGTACGACGGCGTTGG
TAGCTCGACGATTCGGCACATGTCGTCATGGCTGTATGCGAAGGAGTTAG
GCTGCGACTGGATCGCTCCGGACTTCAACCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5454:9165..9447+

>mRNA_L-elsbetiae_contig5454.13711.1 ID=mRNA_L-elsbetiae_contig5454.13711.1|Name=mRNA_L-elsbetiae_contig5454.13711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig5454:9165..9447+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGACTGTGTCAAGGTCTGGGAAGCGTGGTCCCACACGATCTACACCGG
TACTCGAGGTGGGGTGGTTCTAACCTCACACCACGACGTTCTTGATCATG
GCTACCCCGACCGGGAAGTGTTTCAGTCGCTATCCACCTCGCTACGAAGC
CAAGGAACGCCCTGCCTGGTGAAGGGAAAGGTGTCGTACGACGGCGTTGG
TAGCTCGACGATTCGGCACATGTCGTCATGGCTGTATGCGAAGGAGTTAG
GCTGCGACTGGATCGCTCCGGACTTCAACCAGGAGGACTGTGTCAAGGTC
TGGGAAGCGTGGTCCCACACGATCTACACCGGTACTCGAGGTGGGGTGGT
TCTAACCTCACACCACGACGTTCTTGATCATGGCTACCCCGACCGGGAAG
TGTTTCAGTCGCTATCCACCTCGCTACGAAGCCAAGGAACGCCCTGCCTG
GTGAAGGGAAAGGTGTCGTACGACGGCGTTGGTAGCTCGACGATTCGGCA
CATGTCGTCATGGCTGTATGCGAAGGAGTTAGGCTGCGACTGGATCGCTC
CGGACTTCAACCAG
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