Homology
BLAST of mRNA_L-elsbetiae_contig5454.13711.1 vs. uniprot
Match:
D7G5J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J9_ECTSI)
HSP 1 Score: 75.9 bits (185), Expect = 1.670e-14
Identity = 31/94 (32.98%), Postives = 55/94 (58.51%), Query Frame = 1
Query: 1 EDCVKVWEAWSHTIYTGTRGGVVLTSHHDVLDHGYPDREVFQSLSTSLRSQGTPCLVKGKVSYDGVGSSTIRHMSSWLYAKELGCDWIAPDFNQ 282
EDC+ VW ++ T++ + PD +++ + LR G+PCLV + DG GS+TIRH+++W++++E+GCDW+ PD+ +
Sbjct: 120 EDCLHVWNDFNDTVW-------------EQFHPRMPDADLWIDTAEELRRAGSPCLVGSIPNGDGAGSTTIRHLATWIFSREMGCDWVTPDWGK 200
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5454.13711.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.67e-14 / Id = 32.98 Sequence D7G5J9_ECTSI
Match Name E-value Identity Description
D7G5J9_ECTSI 1.670e-14 32.98 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 1
Model size 284
Cds size 282
Stop 0
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816571.8311198-CDS-L-elsbetiae_contig5454:9164..9446 1622816571.8311198-CDS-L-elsbetiae_contig5454:9164..9446 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5454 9165..9446 +
1691683655.7471378-CDS-L-elsbetiae_contig5454:9164..9446 1691683655.7471378-CDS-L-elsbetiae_contig5454:9164..9446 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5454 9165..9446 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5454.13711.1
>prot_L-elsbetiae_contig5454.13711.1 ID=prot_L-elsbetiae_contig5454.13711.1|Name=mRNA_L-elsbetiae_contig5454.13711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
EDCVKVWEAWSHTIYTGTRGGVVLTSHHDVLDHGYPDREVFQSLSTSLRS QGTPCLVKGKVSYDGVGSSTIRHMSSWLYAKELGCDWIAPDFNQ back to top mRNA from alignment at L-elsbetiae_contig5454:9165..9447+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5454.13711.1 ID=mRNA_L-elsbetiae_contig5454.13711.1|Name=mRNA_L-elsbetiae_contig5454.13711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=283bp|location=Sequence derived from alignment at L-elsbetiae_contig5454:9165..9447+ (Laminarionema elsbetiae ELsaHSoW15)GAGGACTGTGTCAAGGTCTGGGAAGCGTGGTCCCACACGATCTACACCGG
TACTCGAGGTGGGGTGGTTCTAACCTCACACCACGACGTTCTTGATCATG
GCTACCCCGACCGGGAAGTGTTTCAGTCGCTATCCACCTCGCTACGAAGC
CAAGGAACGCCCTGCCTGGTGAAGGGAAAGGTGTCGTACGACGGCGTTGG
TAGCTCGACGATTCGGCACATGTCGTCATGGCTGTATGCGAAGGAGTTAG
GCTGCGACTGGATCGCTCCGGACTTCAACCAG G back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5454:9165..9447+
>mRNA_L-elsbetiae_contig5454.13711.1 ID=mRNA_L-elsbetiae_contig5454.13711.1|Name=mRNA_L-elsbetiae_contig5454.13711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig5454:9165..9447+ (Laminarionema elsbetiae ELsaHSoW15) GAGGACTGTGTCAAGGTCTGGGAAGCGTGGTCCCACACGATCTACACCGG TACTCGAGGTGGGGTGGTTCTAACCTCACACCACGACGTTCTTGATCATG GCTACCCCGACCGGGAAGTGTTTCAGTCGCTATCCACCTCGCTACGAAGC CAAGGAACGCCCTGCCTGGTGAAGGGAAAGGTGTCGTACGACGGCGTTGG TAGCTCGACGATTCGGCACATGTCGTCATGGCTGTATGCGAAGGAGTTAG GCTGCGACTGGATCGCTCCGGACTTCAACCAGGAGGACTGTGTCAAGGTC TGGGAAGCGTGGTCCCACACGATCTACACCGGTACTCGAGGTGGGGTGGT TCTAACCTCACACCACGACGTTCTTGATCATGGCTACCCCGACCGGGAAG TGTTTCAGTCGCTATCCACCTCGCTACGAAGCCAAGGAACGCCCTGCCTG GTGAAGGGAAAGGTGTCGTACGACGGCGTTGGTAGCTCGACGATTCGGCA CATGTCGTCATGGCTGTATGCGAAGGAGTTAGGCTGCGACTGGATCGCTC CGGACTTCAACCAG back to top