mRNA_L-elsbetiae_contig540.13625.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig540.13625.1
Unique NamemRNA_L-elsbetiae_contig540.13625.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig540.13625.1 vs. uniprot
Match: D8LI57_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI57_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 1.170e-73
Identity = 180/288 (62.50%), Postives = 199/288 (69.10%), Query Frame = 1 
Query:    7 VEVVEVVGRGKSGFDRFCIRAMEA---STAPAGS-GATAQSVRRQWVAWRRLTEFVALRAALMKAGCSAAEGSDRDTTRMWALPPVVPFGLLMQRLEAWLRRLLRDAQSASREELRRFLLDAPRPTSTDRAAAAAAPPSG------AFPASQGPSAATAADTAG----------------ARRRTAPTLLSTVHEPLSPISAGRAVGLGVGGMAWQDEEGSXXXXXXXXXXXXXXXXXXXXXXAEAREIPSLRPEIKSMFQDPGECHALRIPQREHNQWLRRANRTSA 792
            VEVV VVGRGKSGFDRFC+R +E    S   AG  GATA + RR+WVAWRRLTEFVALR +LM+AGC AAEG DRDT RMW LPP VPFGLLMQRLEAWLRRLLRD ++  REELRRFLLDAPR T+ +                 + PA Q P+ AT A                    +RRRTAPT+LSTVHEPLSPISA                   XXXXXXXXXXXXXXXXXXXXX AEAR IPSLRPE+K+MF+DPGECHALR+P+ EHNQWLRRANR SA
Sbjct:  502 VEVVRVVGRGKSGFDRFCVRVVEVASQSQRQAGVVGATAPTSRREWVAWRRLTEFVALRVSLMEAGCPAAEGGDRDT-RMWQLPPAVPFGLLMQRLEAWLRRLLRDPEAVKREELRRFLLDAPRTTTAENXXXXXXXXXXXXXXXXSLPACQDPAIATNAXXXXXXXXXXXXXXXXXXXXSRRRTAPTVLSTVHEPLSPISAA---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAEARVIPSLRPELKTMFRDPGECHALRVPKHEHNQWLRRANRASA 779
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BLAST of mRNA_L-elsbetiae_contig540.13625.1 vs. uniprot
Match: A0A6H5JPN1_9PHAE (CRAL-TRIO domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN1_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 2.080e-43
Identity = 129/299 (43.14%), Postives = 148/299 (49.50%), Query Frame = 1 
Query:    7 VEVVEVVGRGKSGFDRFCIRAME-ASTAPAGSGATAQSV---RRQWVAWRRLTEFVALRAALMKAGCSAAEGSDRDTTRMWALPPVVPFGLLMQRLEAWLRRLLRDAQSASREELRRFLLDAPRPTSTDRAAAAAAPP------SGAFPASQGPSAATAADTAGARRRTAPTLLSTVHEPLSPISAGRAVGLG---------------------------VGGMAWQDEEGSXXXXXXXXXXXXXXXXXXXXXXAEAREIPSLRPEIKSMFQDPGECHALRIPQREHNQWLRRANRTSA 792
            VEVV VVGRGKSGFDRFC+R +E AS + + S    +S    +++ V  R L      R +LM+AGC AAEG DRDT RMW LPPVVPFGLLMQRLE WLRRLLRD      E LRRFLLDAPR T+    A            S   PA   P+ AT A   GA                                                        GG   ++E G                       AEAR IPSLRPE+K+MF+DPGECHALR+P+ EHNQWLRRANR SA
Sbjct:  338 VEVVRVVGRGKSGFDRFCVRVVEVASRSRSRSQRATESDDGRKKKEVTHRFLACLPTKRVSLMEAGCLAAEGGDRDT-RMWQLPPVVPFGLLMQRLETWLRRLLRDP-----EALRRFLLDAPRTTTAANVAXXXXXXXXXXXASNVLPACHDPAIATNAAWTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLLCPEAGGGPAEEEVGEGGS-------------------AEARVIPSLRPELKTMFRDPGECHALRVPKHEHNQWLRRANRASA 611
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig540.13625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI57_ECTSI1.170e-7362.50CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JPN1_9PHAE2.080e-4343.14CRAL-TRIO domain-containing protein (Fragment) n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig540contigL-elsbetiae_contig540:17166..20816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score257.7
Seed ortholog evalue6e-66
Seed eggNOG ortholog2880.D8LI57
Hectar predicted targeting categoryother localisation
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size793
Cds size792
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig540.13625.1prot_L-elsbetiae_contig540.13625.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig540 17166..20816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816564.7758644-CDS-L-elsbetiae_contig540:17165..172521622816564.7758644-CDS-L-elsbetiae_contig540:17165..17252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 17166..17252 +
1691683650.8345845-CDS-L-elsbetiae_contig540:17165..172521691683650.8345845-CDS-L-elsbetiae_contig540:17165..17252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 17166..17252 +
1622816564.786754-CDS-L-elsbetiae_contig540:18070..181531622816564.786754-CDS-L-elsbetiae_contig540:18070..18153Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 18071..18153 +
1691683650.8500035-CDS-L-elsbetiae_contig540:18070..181531691683650.8500035-CDS-L-elsbetiae_contig540:18070..18153Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 18071..18153 +
1622816564.8005548-CDS-L-elsbetiae_contig540:18947..191131622816564.8005548-CDS-L-elsbetiae_contig540:18947..19113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 18948..19113 +
1691683650.8638532-CDS-L-elsbetiae_contig540:18947..191131691683650.8638532-CDS-L-elsbetiae_contig540:18947..19113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 18948..19113 +
1622816564.8137364-CDS-L-elsbetiae_contig540:20083..204461622816564.8137364-CDS-L-elsbetiae_contig540:20083..20446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 20084..20446 +
1691683650.8728988-CDS-L-elsbetiae_contig540:20083..204461691683650.8728988-CDS-L-elsbetiae_contig540:20083..20446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 20084..20446 +
1622816564.8283422-CDS-L-elsbetiae_contig540:20723..208161622816564.8283422-CDS-L-elsbetiae_contig540:20723..20816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 20724..20816 +
1691683650.8816006-CDS-L-elsbetiae_contig540:20723..208161691683650.8816006-CDS-L-elsbetiae_contig540:20723..20816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 20724..20816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig540.13625.1

>prot_L-elsbetiae_contig540.13625.1 ID=prot_L-elsbetiae_contig540.13625.1|Name=mRNA_L-elsbetiae_contig540.13625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=264bp
MAVEVVEVVGRGKSGFDRFCIRAMEASTAPAGSGATAQSVRRQWVAWRRL
TEFVALRAALMKAGCSAAEGSDRDTTRMWALPPVVPFGLLMQRLEAWLRR
LLRDAQSASREELRRFLLDAPRPTSTDRAAAAAAPPSGAFPASQGPSAAT
AADTAGARRRTAPTLLSTVHEPLSPISAGRAVGLGVGGMAWQDEEGSGGA
AAAAAAAEKAGGGDGGGGGAEAREIPSLRPEIKSMFQDPGECHALRIPQR
EHNQWLRRANRTSA
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mRNA from alignment at L-elsbetiae_contig540:17166..20816+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig540.13625.1 ID=mRNA_L-elsbetiae_contig540.13625.1|Name=mRNA_L-elsbetiae_contig540.13625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3651bp|location=Sequence derived from alignment at L-elsbetiae_contig540:17166..20816+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGTGGAGGTGGTGGAAGTGGTCGGGAGGGGAAAGAGCGGGTTCGA
CCGGTTCTGCATCAGGGCGATGGAGGCGTCTACAGCGGTGAGCGGGGGCT
TTTGTGCTGGTGTTGCCGCGACCCGTTGCGCCAGCCGGTGGTTGGTTGTT
GCTGCCGTTTTGTTTTCGTTATATTTGTTGTCGTTGGCGTGATTGCTCTC
TGTCCAACCCCCAAGCACGTAACACGTGTCGCGGCGGAACAAGCCCGGGG
TGCGGTTGCACAGCACAGTCAGGGCTGCAAGCTGGGCGAAGCGGGCACCA
TGATAATAGCCTACACAACACGCTGAGGGTGCATCCTCCTTTTCGTCCAG
TACTTAGCCTTTGCAGAGAGTTTGTCTTCAGCTAACATATAGGATAGATA
GAGAGAGTATACGAATCGGGAAAGGGGGTCGGGGTTTTGGGTTAGGTCAG
GGTGAAGGTTAGGGTTACGGAGCCCCTCTCTATTTCCTAGATAAAGTCAA
ATTTCTTCGCGAAGGCTACCCTTTTCGTCGGCGTCCGGTTTGTCCCTGCG
TTGTGCGTGCCTTGGTCCCGCCCGACCTTGTTGCCCCGATATATTTTATG
TAAGTACAGCAGTACATCATGAAACAGTAGATGCGTGCGCTCATTGGTCT
TAAGCTACGGTGGTGTGCCGTATTCTGTTGAGATTTGTTTCGAGACCGCC
TTCTGTCTCCTCCACCAACTCCAGGGGGAAAGATCTTGCTACAGTACCAT
ACATAGCAGCAGCGTTTTTGCCTATTCAGACACCGTCTGTGTTTTCTTGC
TGGCACAAAGCTTTCCTTGGCAATGATGCCACGAGGAGTCGCACCGCTGA
ATTTGTGGTTGTTAAGAAGTATTGATCTTGGTCCCTTCGCCTGCCTTTCC
TCCAGCCGGCTGGAAGCGGAGCCACCGCGCAGTCGGTGCGGAGGCAGTGG
GTTGCTTGGCGGCGGCTGACCGAGTTCGTGGCTCTCAGGTACGCCGGCGG
GCTGAGGAAGAGTAAGCAGCAGTGTCAGCGGCATCAGACCGCATGCCGTG
TATGTTCGGGAACGTCTGTGTGGGCTTCTCTCGTTTGACTCGGTCTGGGT
CGATGATGGGGGATAAGGTGCTTTGACGATTCAATCCACTCGCTCTTCGC
ACGCAGTGAACTCGAGTGCGGTTACCATCCATAAATACGCCCCACTATTA
TATGATACCGTCTGCGGAAGACGTAGTTTGTAAGTTCCTCTTTCTATCTG
GTAATTGCTGCTGTAGTTGTTTTTTCCGCGTCGAGAGGCCTCAAGCTTCA
CAAACCGCATTCTTGTGCTCATCGACAGTAGGCAAACTTGCCTCCTCAAG
TACATACACCTTGCCGCCGCGGGGGGGGGGGTCAAAACGAGGGGTTCATT
TTCTCACCCGCCGCACATCAGCCAATCAGGTTTCAAGGATTTCACGCGTT
TCGACATGGTTCTCTCGAGGCTCCGTGAATGAATCAAGGATCGATGAAGT
ATTTTACTGACTGATACCTATCTCCCCCCCCCCCCCGCTCGCTATTTTAA
TGTTTAGGATGTTCACGGAAAATGTCAATGTGGTCTTTCTTATAGATGCA
GACAAGTTGCCGACCCCTAAACATCTTCCACCCCCTTCCTCATTCCTGTT
TGACTGGATCTATGTATACGGAAAAGTGTTGCCTTGGTTCACAGGTTGCT
GACCCCTTCAAAGTATTGTCAGCTCGTTCCTTTTTAATCGGATGTTCACA
CGGGATTTTTTTTTTGTCGTGATAACGTTCAGGGCTGCCCTCATGAAGGC
GGGGTGTTCGGCGGCCGAGGGGAGCGATCGTGACACGACGAGGATGTGGG
CCTTGCCGCCGGTGGTGCCGTTCGGGCTGCTGATGCAGAGGCTGGAGGCG
TGGCTTCGAAGGCTGCTTCGAGACGCTCAATCGGCTAGCAGGGAAGAGGT
AGGGAAACGACGAGTGGGTGGATGGGTGGGTGGGTAGACGGCTTTCGGAG
GCAAGAGAGAGACACACACACAGAGAGAGAGATAGAGAGATAGAGAGAGA
TAGAGAGAGGGGGGGGGAGAGAGAGAGAGAGAGACATAGACAGAGAGAGA
GAGCGAGAGCGAGAGAGAGAGAGAGAGGGAGAGAGCAAGAGCGCGAAAAA
AAAGGGTCCCAGCCAGCCACGAATATGTAGCTGCTTGTTGTCGGGGATCG
GGGAGAGAAGACGGAGGCATCGGGGGCATGGGAGGGTGTGGTGCTTTCAC
GGGCCGCATGAGGGTGTTCTTATCGCTCTATGGGTGGGTTTAAAACAACT
GCTGTTGCTTGAGTCTCTGTATTTAGTGTTCGCAGTCAGGAGTAGGAGTA
CATCTCTGAAGCCCGAGAAAGGCTGACACGCCGTGCAAGCGCAGAGTCAC
AGGGAGCGCGCTGAGATAAACAATATGTTGTGAACGTCCTGAAGACATGC
ATGTCGCTGCAGCAGCAGTTGCAAGGACTGGAAATACCTTACATGGGTGG
ATGTTCAAGTGAATCACACACGTGGGCGTGTCGCAACGTCGCAACCGAGC
TGCTCTAGCAGAGCGTTGCTACATACTCCCTCTACCCAACGTTCCAGCCC
ACCAACCTGGCCCCGACTGAGTCGATCCGAAGAGCGCAAGATAGTAGATA
GATACGGTTGCCGCGCCAAGCTCGGGCGTGTACTTTGGATGCCTCAATAC
AGTACCATCGGCAGGAGCGCCGTTCGAACTACCGTCACCCTCGCTCTGCC
CCGGCTACAGCTGCAGGTGATATCTTGACACCCCCCGATTCATTATTTCC
GCGGGGCCTCGACCGCCGCCGCCGCCGCCGCCGCCATGAGCACTCCAAAA
CGCCACCGCTGACGCTGTTGCTCCTGCTCACGTTTTTTGTTTTCGTTTTT
TTCCCACTTGTCCCCCAGCTGCGACGTTTCCTCTTAGACGCCCCCCGGCC
GACAAGCACCGACCGTGCCGCCGCCGCCGCTGCTCCGCCAAGCGGCGCCT
TTCCGGCGTCCCAGGGCCCGTCCGCCGCTACCGCCGCCGATACGGCTGGC
GCGAGGAGGAGGACGGCGCCTACGCTGCTGTCGACCGTGCACGAACCACT
GTCGCCGATTTCGGCGGGGCGTGCGGTCGGCCTTGGCGTCGGCGGCATGG
CATGGCAGGACGAAGAGGGTTCAGGGGGGGCGGCCGCGGCGGCGGCGGCG
GCGGAGAAGGCCGGCGGCGGCGACGGTGGTGGCGGTGGTGCGGAGGCTCG
AGAGATACCCAGCCTCCGGCCTGAGATAAAGGTAACTTCAAAGTAGAAGT
TGGTGCGTTTTTGACGAGTGGAGGAGAGCCGAGTGTGTTCACGCGGGCGG
CCGTTTGGTCGTGAGTCAAATCCGGCAAAATGGTTCTCTGTCTGCTGTGC
AAATCACCTTTTTGTTGTTCCCTTTTTTTGAGTTCAGTCATCTCCCCCCC
CTCTTCGCCGCCGTGCCCCCCTGTTGGCCCCCCCCCCCCCCGCCCGTCGG
GGGAGTAAAACTAACCTCGCGTGTGGCGCGTATTTTGGTTGCGGTCTCGC
CGTCGCAGTCCATGTTCCAAGACCCGGGGGAGTGCCACGCGCTGAGGATA
CCGCAGCGGGAGCACAACCAGTGGCTCCGCCGCGCGAACCGCACCTCCGC
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig540:17166..20816+

>mRNA_L-elsbetiae_contig540.13625.1 ID=mRNA_L-elsbetiae_contig540.13625.1|Name=mRNA_L-elsbetiae_contig540.13625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1584bp|location=Sequence derived from alignment at L-elsbetiae_contig540:17166..20816+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGTGGAGGTGGTGGAAGTGGTCGGGAGGGGAAAGAGCGGGTTCGA
CCGGTTCTGCATCAGGGCGATGGAGGCGTCTACAGCGATGGCGGTGGAGG
TGGTGGAAGTGGTCGGGAGGGGAAAGAGCGGGTTCGACCGGTTCTGCATC
AGGGCGATGGAGGCGTCTACAGCGCCGGCTGGAAGCGGAGCCACCGCGCA
GTCGGTGCGGAGGCAGTGGGTTGCTTGGCGGCGGCTGACCGAGTTCGTGG
CTCTCAGCCGGCTGGAAGCGGAGCCACCGCGCAGTCGGTGCGGAGGCAGT
GGGTTGCTTGGCGGCGGCTGACCGAGTTCGTGGCTCTCAGGGCTGCCCTC
ATGAAGGCGGGGTGTTCGGCGGCCGAGGGGAGCGATCGTGACACGACGAG
GATGTGGGCCTTGCCGCCGGTGGTGCCGTTCGGGCTGCTGATGCAGAGGC
TGGAGGCGTGGCTTCGAAGGCTGCTTCGAGACGCTCAATCGGCTAGCAGG
GAAGAGGGCTGCCCTCATGAAGGCGGGGTGTTCGGCGGCCGAGGGGAGCG
ATCGTGACACGACGAGGATGTGGGCCTTGCCGCCGGTGGTGCCGTTCGGG
CTGCTGATGCAGAGGCTGGAGGCGTGGCTTCGAAGGCTGCTTCGAGACGC
TCAATCGGCTAGCAGGGAAGAGCTGCGACGTTTCCTCTTAGACGCCCCCC
GGCCGACAAGCACCGACCGTGCCGCCGCCGCCGCTGCTCCGCCAAGCGGC
GCCTTTCCGGCGTCCCAGGGCCCGTCCGCCGCTACCGCCGCCGATACGGC
TGGCGCGAGGAGGAGGACGGCGCCTACGCTGCTGTCGACCGTGCACGAAC
CACTGTCGCCGATTTCGGCGGGGCGTGCGGTCGGCCTTGGCGTCGGCGGC
ATGGCATGGCAGGACGAAGAGGGTTCAGGGGGGGCGGCCGCGGCGGCGGC
GGCGGCGGAGAAGGCCGGCGGCGGCGACGGTGGTGGCGGTGGTGCGGAGG
CTCGAGAGATACCCAGCCTCCGGCCTGAGATAAAGCTGCGACGTTTCCTC
TTAGACGCCCCCCGGCCGACAAGCACCGACCGTGCCGCCGCCGCCGCTGC
TCCGCCAAGCGGCGCCTTTCCGGCGTCCCAGGGCCCGTCCGCCGCTACCG
CCGCCGATACGGCTGGCGCGAGGAGGAGGACGGCGCCTACGCTGCTGTCG
ACCGTGCACGAACCACTGTCGCCGATTTCGGCGGGGCGTGCGGTCGGCCT
TGGCGTCGGCGGCATGGCATGGCAGGACGAAGAGGGTTCAGGGGGGGCGG
CCGCGGCGGCGGCGGCGGCGGAGAAGGCCGGCGGCGGCGACGGTGGTGGC
GGTGGTGCGGAGGCTCGAGAGATACCCAGCCTCCGGCCTGAGATAAAGTC
CATGTTCCAAGACCCGGGGGAGTGCCACGCGCTGAGGATACCGCAGCGGG
AGCACAACCAGTGGCTCCGCCGCGCGAACCGCACCTCCGCGTCCATGTTC
CAAGACCCGGGGGAGTGCCACGCGCTGAGGATACCGCAGCGGGAGCACAA
CCAGTGGCTCCGCCGCGCGAACCGCACCTCCGCG
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