mRNA_L-elsbetiae_contig540.13625.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig540.13625.1 vs. uniprot
Match: D8LI57_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI57_ECTSI) HSP 1 Score: 254 bits (649), Expect = 1.170e-73 Identity = 180/288 (62.50%), Postives = 199/288 (69.10%), Query Frame = 1 Query: 7 VEVVEVVGRGKSGFDRFCIRAMEA---STAPAGS-GATAQSVRRQWVAWRRLTEFVALRAALMKAGCSAAEGSDRDTTRMWALPPVVPFGLLMQRLEAWLRRLLRDAQSASREELRRFLLDAPRPTSTDRAAAAAAPPSG------AFPASQGPSAATAADTAG----------------ARRRTAPTLLSTVHEPLSPISAGRAVGLGVGGMAWQDEEGSXXXXXXXXXXXXXXXXXXXXXXAEAREIPSLRPEIKSMFQDPGECHALRIPQREHNQWLRRANRTSA 792 VEVV VVGRGKSGFDRFC+R +E S AG GATA + RR+WVAWRRLTEFVALR +LM+AGC AAEG DRDT RMW LPP VPFGLLMQRLEAWLRRLLRD ++ REELRRFLLDAPR T+ + + PA Q P+ AT A +RRRTAPT+LSTVHEPLSPISA XXXXXXXXXXXXXXXXXXXXX AEAR IPSLRPE+K+MF+DPGECHALR+P+ EHNQWLRRANR SA Sbjct: 502 VEVVRVVGRGKSGFDRFCVRVVEVASQSQRQAGVVGATAPTSRREWVAWRRLTEFVALRVSLMEAGCPAAEGGDRDT-RMWQLPPAVPFGLLMQRLEAWLRRLLRDPEAVKREELRRFLLDAPRTTTAENXXXXXXXXXXXXXXXXSLPACQDPAIATNAXXXXXXXXXXXXXXXXXXXXSRRRTAPTVLSTVHEPLSPISAA---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAEARVIPSLRPELKTMFRDPGECHALRVPKHEHNQWLRRANRASA 779
BLAST of mRNA_L-elsbetiae_contig540.13625.1 vs. uniprot
Match: A0A6H5JPN1_9PHAE (CRAL-TRIO domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN1_9PHAE) HSP 1 Score: 167 bits (423), Expect = 2.080e-43 Identity = 129/299 (43.14%), Postives = 148/299 (49.50%), Query Frame = 1 Query: 7 VEVVEVVGRGKSGFDRFCIRAME-ASTAPAGSGATAQSV---RRQWVAWRRLTEFVALRAALMKAGCSAAEGSDRDTTRMWALPPVVPFGLLMQRLEAWLRRLLRDAQSASREELRRFLLDAPRPTSTDRAAAAAAPP------SGAFPASQGPSAATAADTAGARRRTAPTLLSTVHEPLSPISAGRAVGLG---------------------------VGGMAWQDEEGSXXXXXXXXXXXXXXXXXXXXXXAEAREIPSLRPEIKSMFQDPGECHALRIPQREHNQWLRRANRTSA 792 VEVV VVGRGKSGFDRFC+R +E AS + + S +S +++ V R L R +LM+AGC AAEG DRDT RMW LPPVVPFGLLMQRLE WLRRLLRD E LRRFLLDAPR T+ A S PA P+ AT A GA GG ++E G AEAR IPSLRPE+K+MF+DPGECHALR+P+ EHNQWLRRANR SA Sbjct: 338 VEVVRVVGRGKSGFDRFCVRVVEVASRSRSRSQRATESDDGRKKKEVTHRFLACLPTKRVSLMEAGCLAAEGGDRDT-RMWQLPPVVPFGLLMQRLETWLRRLLRDP-----EALRRFLLDAPRTTTAANVAXXXXXXXXXXXASNVLPACHDPAIATNAAWTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLLCPEAGGGPAEEEVGEGGS-------------------AEARVIPSLRPELKTMFRDPGECHALRVPKHEHNQWLRRANRASA 611 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig540.13625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig540.13625.1 >prot_L-elsbetiae_contig540.13625.1 ID=prot_L-elsbetiae_contig540.13625.1|Name=mRNA_L-elsbetiae_contig540.13625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=264bp MAVEVVEVVGRGKSGFDRFCIRAMEASTAPAGSGATAQSVRRQWVAWRRLback to top mRNA from alignment at L-elsbetiae_contig540:17166..20816+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig540.13625.1 ID=mRNA_L-elsbetiae_contig540.13625.1|Name=mRNA_L-elsbetiae_contig540.13625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3651bp|location=Sequence derived from alignment at L-elsbetiae_contig540:17166..20816+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig540:17166..20816+ >mRNA_L-elsbetiae_contig540.13625.1 ID=mRNA_L-elsbetiae_contig540.13625.1|Name=mRNA_L-elsbetiae_contig540.13625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1584bp|location=Sequence derived from alignment at L-elsbetiae_contig540:17166..20816+ (Laminarionema elsbetiae ELsaHSoW15)back to top |