mRNA_L-elsbetiae_contig540.13624.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig540.13624.1
Unique NamemRNA_L-elsbetiae_contig540.13624.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig540.13624.1 vs. uniprot
Match: D8LI57_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI57_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.010e-19
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    7 AIALLLTLWALHREFPRLGESALLALAACCLARELVGGPATLPSSEFRVPLLHDPRALLAAAS 195
            AIALLL LWALHRE PRLGE+A+L LA   LARE VGG ATLPS+  RVPLLHDPRAL+AAA+
Sbjct:  390 AIALLLILWALHRESPRLGETAMLGLAVALLARECVGGAATLPSANRRVPLLHDPRALVAAAA 452
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BLAST of mRNA_L-elsbetiae_contig540.13624.1 vs. uniprot
Match: A0A6H5JPN1_9PHAE (CRAL-TRIO domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN1_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.580e-18
Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    7 AIALLLTLWALHREFPRLGESALLALAACCLARELVGGPATLPSSEFRVPLLHDPRALLAAAS 195
            AIALLL LWAL RE PRLGE+A+L LA   LARE VGG ATLPS+  RVPLLHDPRAL+AAA+
Sbjct:  226 AIALLLILWALQRESPRLGETAILGLAVALLARECVGGAATLPSASRRVPLLHDPRALVAAAA 288
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig540.13624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI57_ECTSI3.010e-1976.19CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JPN1_9PHAE3.580e-1874.60CRAL-TRIO domain-containing protein (Fragment) n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig540contigL-elsbetiae_contig540:16785..17074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.2e-16
Seed eggNOG ortholog2880.D8LI57
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size290
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816564.740705-CDS-L-elsbetiae_contig540:16784..170721622816564.740705-CDS-L-elsbetiae_contig540:16784..17072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 16785..17072 +
1691683650.82188-CDS-L-elsbetiae_contig540:16784..170721691683650.82188-CDS-L-elsbetiae_contig540:16784..17072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 16785..17072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig540.13624.1prot_L-elsbetiae_contig540.13624.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig540 16785..17072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig540.13624.1

>prot_L-elsbetiae_contig540.13624.1 ID=prot_L-elsbetiae_contig540.13624.1|Name=mRNA_L-elsbetiae_contig540.13624.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
AHAIALLLTLWALHREFPRLGESALLALAACCLARELVGGPATLPSSEFR
VPLLHDPRALLAAASKGSDGSSSGGGGRGRLVGGRCGNLGGDGVGG
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mRNA from alignment at L-elsbetiae_contig540:16785..17074+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig540.13624.1 ID=mRNA_L-elsbetiae_contig540.13624.1|Name=mRNA_L-elsbetiae_contig540.13624.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=290bp|location=Sequence derived from alignment at L-elsbetiae_contig540:16785..17074+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCACGCGATCGCGCTGCTGCTGACCCTGTGGGCGCTGCACAGGGAGTT
TCCCCGGTTGGGTGAGTCCGCCCTACTGGCCCTCGCTGCCTGCTGCCTGG
CCAGGGAGCTCGTCGGGGGGCCCGCCACCCTCCCCTCCTCGGAGTTCCGG
GTCCCGCTCTTGCACGACCCTCGTGCCTTGCTTGCCGCTGCCTCGAAGGG
CAGCGACGGCAGCAGCAGCGGCGGTGGCGGCCGTGGCCGCCTCGTTGGCG
GCCGCTGCGGCAACCTCGGTGGCGACGGCGTTGGTGGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig540:16785..17074+

>mRNA_L-elsbetiae_contig540.13624.1 ID=mRNA_L-elsbetiae_contig540.13624.1|Name=mRNA_L-elsbetiae_contig540.13624.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig540:16785..17074+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCACGCGATCGCGCTGCTGCTGACCCTGTGGGCGCTGCACAGGGAGTT
TCCCCGGTTGGGTGAGTCCGCCCTACTGGCCCTCGCTGCCTGCTGCCTGG
CCAGGGAGCTCGTCGGGGGGCCCGCCACCCTCCCCTCCTCGGAGTTCCGG
GTCCCGCTCTTGCACGACCCTCGTGCCTTGCTTGCCGCTGCCTCGAAGGG
CAGCGACGGCAGCAGCAGCGGCGGTGGCGGCCGTGGCCGCCTCGTTGGCG
GCCGCTGCGGCAACCTCGGTGGCGACGGCGTTGGTGGTGCGCACGCGATC
GCGCTGCTGCTGACCCTGTGGGCGCTGCACAGGGAGTTTCCCCGGTTGGG
TGAGTCCGCCCTACTGGCCCTCGCTGCCTGCTGCCTGGCCAGGGAGCTCG
TCGGGGGGCCCGCCACCCTCCCCTCCTCGGAGTTCCGGGTCCCGCTCTTG
CACGACCCTCGTGCCTTGCTTGCCGCTGCCTCGAAGGGCAGCGACGGCAG
CAGCAGCGGCGGTGGCGGCCGTGGCCGCCTCGTTGGCGGCCGCTGCGGCA
ACCTCGGTGGCGACGGCGTTGGTGGT
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