mRNA_L-elsbetiae_contig5393.13606.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: D7FXT3_ECTSI (TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT3_ECTSI) HSP 1 Score: 233 bits (594), Expect = 2.030e-70 Identity = 114/139 (82.01%), Postives = 124/139 (89.21%), Query Frame = 1 Query: 1 QVEREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSPLPFAQ 417 +VE+ YR LSEFV +SWELYRPELEAV FPVFVHCYLTLVMFDHG EA+ LMRAWGGEHE R+KDEM LLKMVTA+EHAEAS +C+LV TH FR K+C +TSKLLNAFLVN GLLLVMHILNTRV FVLEERSPLPFAQ Sbjct: 105 KVEQAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFDHGAEARGLMRAWGGEHEERFKDEMTLLKMVTAREHAEASDYCKLVLTHKFRVKICLATSKLLNAFLVNKGLLLVMHILNTRVQFVLEERSPLPFAQ 243
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A6H5JEL6_9PHAE (TFIID_NTD2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL6_9PHAE) HSP 1 Score: 152 bits (383), Expect = 1.200e-43 Identity = 71/88 (80.68%), Postives = 79/88 (89.77%), Query Frame = 1 Query: 1 QVEREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLV 264 +VE+ YR LSEFV +SWELYRPELEAV FPVFVHCYLTLVMFDHG EA+ LMRAWGGEHE R+KDEM LLKMVTA+EHAEAS +C+LV Sbjct: 105 KVEQAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFDHGAEARGLMRAWGGEHEERFKDEMTLLKMVTAREHAEASDYCKLV 192
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: I2CPL9_NANGC (Transcription initiation factor tfiid subunit (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPL9_NANGC) HSP 1 Score: 93.6 bits (231), Expect = 8.990e-21 Identity = 53/134 (39.55%), Postives = 78/134 (58.21%), Query Frame = 1 Query: 10 REYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEA-SGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSPLP 408 R Y L + ++ E Y+PEL V FPVFVH YL LV E A++ ++ WG +H Y+ E++ L V +H A +GF + T F ++C + +LL +FL + LLL+M ILN +V V+EER P+P Sbjct: 87 RNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMP 220
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A5D6XMW3_9STRA (TFIID_NTD2 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMW3_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 4.550e-17 Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 1 Query: 7 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 402 E Y L E++ +S ++Y+ EL AV FP+FVHC+L LV E A + +R +H + E++LL MV H AS + Q V F ++ + +LLNAFL + L L++ ILN RV+ ++ P Sbjct: 145 EHAYTQLMEWICNSLDMYKYELHAVAFPMFVHCFLELVAKGFAEHASAFLRRHAADHTRLHLAELRLLSMVLTPAHVRASEYAQQVLHSKFNVQMSLLSFELLNAFLGHEQLFLLLAILNERVNLIVTANQP 276
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A067CL81_SAPPC (TFIID_NTD2 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CL81_SAPPC) HSP 1 Score: 82.8 bits (203), Expect = 9.850e-16 Identity = 44/132 (33.33%), Postives = 75/132 (56.82%), Query Frame = 1 Query: 7 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 402 E Y L +++G++ ++Y+ EL A+ FP+FVHCYL LV E AK+ R +HE ++ E++ L V +EH + + + V F+ K+ T +LL+ FL + + L+++ILN RV+ + P Sbjct: 72 EHAYSKLLQWIGNALDMYKLELHAIAFPLFVHCYLELVAKGFTEPAKAFFRRHAKDHERLHRLELRQLGCVLTREHLTLNEYAKQVLHAKFQVKLSLLTFQLLHTFLSDYQMFLLLYILNERVNIAVTSNHP 203
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A6A5ANV2_9STRA (TFIID_NTD2 domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ANV2_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 2.610e-15 Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 1 Query: 7 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 402 ER Y +L ++G+S ++Y+ EL AV FP+FVHCYL LV H + AK+ +H+ +K E++ L V +EH + + + V F ++ +LL+ FL + + L++ ILN RV+ ++ P Sbjct: 64 ERAYTTLLAWIGNSLDMYKLELHAVAFPLFVHCYLELVAKGHADAAKAYFTRHAKDHQRLHKHEIRSLGSVLTREHLGLNEYAKQVLHSKFHVQLSLLGFQLLHTFLSDHQMFLLLCILNDRVTISVQANHP 195
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: W4GZ94_9STRA (TFIID_NTD2 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GZ94_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 8.250e-15 Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 1 Query: 7 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 402 ER Y +L ++G+S ++Y+ EL AV FP+FVHCYL LV H + AK+ +H+ +K E++ L V +EH + + + V F ++ +LL+ FL + + L++ ILN RV+ ++ P Sbjct: 64 ERAYTTLLAWIGNSLDMYKLELHAVAFPLFVHCYLELVAKGHADAAKAYFTRHAKDHQRLHKHEIRSLGSVLTREHLGLNEYAKQVLHSKFHVQLSLLGFQLLHTFLSDHQMFLLLCILNDRVTISVQTNHP 195
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: W4GXC9_9STRA (TFIID_NTD2 domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GXC9_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 8.600e-15 Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 1 Query: 7 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 402 ER Y +L ++G+S ++Y+ EL AV FP+FVHCYL LV H + AK+ +H+ +K E++ L V +EH + + + V F ++ +LL+ FL + + L++ ILN RV+ ++ P Sbjct: 64 ERAYTTLLAWIGNSLDMYKLELHAVAFPLFVHCYLELVAKGHADAAKAYFTRHAKDHQRLHKHEIRSLGSVLTREHLGLNEYAKQVLHSKFHVQLSLLGFQLLHTFLSDHQMFLLLCILNDRVTISVQTNHP 195
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A397A515_9STRA (TFIID_NTD2 domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A515_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 8.850e-15 Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 1 Query: 7 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 402 ER Y +L ++G+S ++Y+ EL AV FP+FVHCYL LV H + AK+ +H+ +K E++ L V +EH + + + V F ++ +LL+ FL + + L++ ILN RV+ ++ P Sbjct: 6 ERAYTTLLAWIGNSLDMYKLELHAVAFPLFVHCYLELVAKGHADAAKAYFTRHAKDHQRLHKHEIRSLGSVLTREHLGLNEYAKQVLHSKFHVQLSLLGFQLLHTFLSDHQMFLLLCILNDRVTISVQTNHP 137
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A425D3R2_9STRA (TFIID_NTD2 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D3R2_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 8.970e-15 Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 1 Query: 7 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 402 ER Y +L ++G+S ++Y+ EL AV FP+FVHCYL LV H + AK+ +H+ +K E++ L V +EH + + + V F ++ +LL+ FL + + L++ ILN RV+ ++ P Sbjct: 60 ERAYTTLLAWIGNSLDMYKLELHAVAFPLFVHCYLELVAKGHADAAKAYFTRHAKDHQRLHKHEIRSLGSVLTREHLGLNEYAKQVLHSKFHVQLSLLGFQLLHTFLSDHQMFLLLCILNDRVTISVQTNHP 191 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5393.13606.1 >prot_L-elsbetiae_contig5393.13606.1 ID=prot_L-elsbetiae_contig5393.13606.1|Name=mRNA_L-elsbetiae_contig5393.13606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp QVEREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSback to top mRNA from alignment at L-elsbetiae_contig5393:5240..7559- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5393.13606.1 ID=mRNA_L-elsbetiae_contig5393.13606.1|Name=mRNA_L-elsbetiae_contig5393.13606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2320bp|location=Sequence derived from alignment at L-elsbetiae_contig5393:5240..7559- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5393:5240..7559- >mRNA_L-elsbetiae_contig5393.13606.1 ID=mRNA_L-elsbetiae_contig5393.13606.1|Name=mRNA_L-elsbetiae_contig5393.13606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig5393:5240..7559- (Laminarionema elsbetiae ELsaHSoW15)back to top |