mRNA_L-elsbetiae_contig5393.13606.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5393.13606.1
Unique NamemRNA_L-elsbetiae_contig5393.13606.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: D7FXT3_ECTSI (TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT3_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 2.030e-70
Identity = 114/139 (82.01%), Postives = 124/139 (89.21%), Query Frame = 1
Query:    1 QVEREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSPLPFAQ 417
            +VE+ YR LSEFV +SWELYRPELEAV FPVFVHCYLTLVMFDHG EA+ LMRAWGGEHE R+KDEM LLKMVTA+EHAEAS +C+LV TH FR K+C +TSKLLNAFLVN GLLLVMHILNTRV FVLEERSPLPFAQ
Sbjct:  105 KVEQAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFDHGAEARGLMRAWGGEHEERFKDEMTLLKMVTAREHAEASDYCKLVLTHKFRVKICLATSKLLNAFLVNKGLLLVMHILNTRVQFVLEERSPLPFAQ 243          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A6H5JEL6_9PHAE (TFIID_NTD2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL6_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.200e-43
Identity = 71/88 (80.68%), Postives = 79/88 (89.77%), Query Frame = 1
Query:    1 QVEREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLV 264
            +VE+ YR LSEFV +SWELYRPELEAV FPVFVHCYLTLVMFDHG EA+ LMRAWGGEHE R+KDEM LLKMVTA+EHAEAS +C+LV
Sbjct:  105 KVEQAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFDHGAEARGLMRAWGGEHEERFKDEMTLLKMVTAREHAEASDYCKLV 192          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: I2CPL9_NANGC (Transcription initiation factor tfiid subunit (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPL9_NANGC)

HSP 1 Score: 93.6 bits (231), Expect = 8.990e-21
Identity = 53/134 (39.55%), Postives = 78/134 (58.21%), Query Frame = 1
Query:   10 REYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEA-SGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSPLP 408
            R Y  L  +  ++ E Y+PEL  V FPVFVH YL LV     E A++ ++ WG +H   Y+ E++ L  V   +H  A +GF +   T  F  ++C  + +LL +FL +  LLL+M ILN +V  V+EER P+P
Sbjct:   87 RNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMP 220          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A5D6XMW3_9STRA (TFIID_NTD2 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMW3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.550e-17
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 1
Query:    7 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 402
            E  Y  L E++ +S ++Y+ EL AV FP+FVHC+L LV     E A + +R    +H   +  E++LL MV    H  AS + Q V    F  ++   + +LLNAFL +  L L++ ILN RV+ ++    P
Sbjct:  145 EHAYTQLMEWICNSLDMYKYELHAVAFPMFVHCFLELVAKGFAEHASAFLRRHAADHTRLHLAELRLLSMVLTPAHVRASEYAQQVLHSKFNVQMSLLSFELLNAFLGHEQLFLLLAILNERVNLIVTANQP 276          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A067CL81_SAPPC (TFIID_NTD2 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CL81_SAPPC)

HSP 1 Score: 82.8 bits (203), Expect = 9.850e-16
Identity = 44/132 (33.33%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    7 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 402
            E  Y  L +++G++ ++Y+ EL A+ FP+FVHCYL LV     E AK+  R    +HE  ++ E++ L  V  +EH   + + + V    F+ K+   T +LL+ FL +  + L+++ILN RV+  +    P
Sbjct:   72 EHAYSKLLQWIGNALDMYKLELHAIAFPLFVHCYLELVAKGFTEPAKAFFRRHAKDHERLHRLELRQLGCVLTREHLTLNEYAKQVLHAKFQVKLSLLTFQLLHTFLSDYQMFLLLYILNERVNIAVTSNHP 203          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A6A5ANV2_9STRA (TFIID_NTD2 domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ANV2_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.610e-15
Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    7 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 402
            ER Y +L  ++G+S ++Y+ EL AV FP+FVHCYL LV   H + AK+       +H+  +K E++ L  V  +EH   + + + V    F  ++     +LL+ FL +  + L++ ILN RV+  ++   P
Sbjct:   64 ERAYTTLLAWIGNSLDMYKLELHAVAFPLFVHCYLELVAKGHADAAKAYFTRHAKDHQRLHKHEIRSLGSVLTREHLGLNEYAKQVLHSKFHVQLSLLGFQLLHTFLSDHQMFLLLCILNDRVTISVQANHP 195          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: W4GZ94_9STRA (TFIID_NTD2 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GZ94_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.250e-15
Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    7 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 402
            ER Y +L  ++G+S ++Y+ EL AV FP+FVHCYL LV   H + AK+       +H+  +K E++ L  V  +EH   + + + V    F  ++     +LL+ FL +  + L++ ILN RV+  ++   P
Sbjct:   64 ERAYTTLLAWIGNSLDMYKLELHAVAFPLFVHCYLELVAKGHADAAKAYFTRHAKDHQRLHKHEIRSLGSVLTREHLGLNEYAKQVLHSKFHVQLSLLGFQLLHTFLSDHQMFLLLCILNDRVTISVQTNHP 195          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: W4GXC9_9STRA (TFIID_NTD2 domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GXC9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.600e-15
Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    7 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 402
            ER Y +L  ++G+S ++Y+ EL AV FP+FVHCYL LV   H + AK+       +H+  +K E++ L  V  +EH   + + + V    F  ++     +LL+ FL +  + L++ ILN RV+  ++   P
Sbjct:   64 ERAYTTLLAWIGNSLDMYKLELHAVAFPLFVHCYLELVAKGHADAAKAYFTRHAKDHQRLHKHEIRSLGSVLTREHLGLNEYAKQVLHSKFHVQLSLLGFQLLHTFLSDHQMFLLLCILNDRVTISVQTNHP 195          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A397A515_9STRA (TFIID_NTD2 domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A515_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.850e-15
Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    7 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 402
            ER Y +L  ++G+S ++Y+ EL AV FP+FVHCYL LV   H + AK+       +H+  +K E++ L  V  +EH   + + + V    F  ++     +LL+ FL +  + L++ ILN RV+  ++   P
Sbjct:    6 ERAYTTLLAWIGNSLDMYKLELHAVAFPLFVHCYLELVAKGHADAAKAYFTRHAKDHQRLHKHEIRSLGSVLTREHLGLNEYAKQVLHSKFHVQLSLLGFQLLHTFLSDHQMFLLLCILNDRVTISVQTNHP 137          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A425D3R2_9STRA (TFIID_NTD2 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D3R2_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.970e-15
Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    7 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 402
            ER Y +L  ++G+S ++Y+ EL AV FP+FVHCYL LV   H + AK+       +H+  +K E++ L  V  +EH   + + + V    F  ++     +LL+ FL +  + L++ ILN RV+  ++   P
Sbjct:   60 ERAYTTLLAWIGNSLDMYKLELHAVAFPLFVHCYLELVAKGHADAAKAYFTRHAKDHQRLHKHEIRSLGSVLTREHLGLNEYAKQVLHSKFHVQLSLLGFQLLHTFLSDHQMFLLLCILNDRVTISVQTNHP 191          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXT3_ECTSI2.030e-7082.01TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JEL6_9PHAE1.200e-4380.68TFIID_NTD2 domain-containing protein (Fragment) n=... [more]
I2CPL9_NANGC8.990e-2139.55Transcription initiation factor tfiid subunit (Fra... [more]
A0A5D6XMW3_9STRA4.550e-1736.36TFIID_NTD2 domain-containing protein n=1 Tax=Pythi... [more]
A0A067CL81_SAPPC9.850e-1633.33TFIID_NTD2 domain-containing protein n=2 Tax=Sapro... [more]
A0A6A5ANV2_9STRA2.610e-1533.33TFIID_NTD2 domain-containing protein n=4 Tax=Aphan... [more]
W4GZ94_9STRA8.250e-1533.33TFIID_NTD2 domain-containing protein n=1 Tax=Aphan... [more]
W4GXC9_9STRA8.600e-1533.33TFIID_NTD2 domain-containing protein n=6 Tax=Aphan... [more]
A0A397A515_9STRA8.850e-1533.33TFIID_NTD2 domain-containing protein (Fragment) n=... [more]
A0A425D3R2_9STRA8.970e-1533.33TFIID_NTD2 domain-containing protein n=5 Tax=Aphan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5393contigL-elsbetiae_contig5393:5240..7559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.6
Seed ortholog evalue2.9e-59
Seed eggNOG ortholog2880.D7FXT3
KEGG koko:K03130
KEGG Pathwayko03022,ko05168,map03022,map05168
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0000428,GO:0001673,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030880,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044798,GO:0046483,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0051321,GO:0051704,GO:0055029,GO:0060255,GO:0061695,GO:0061982,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090575,GO:0097659,GO:0140013,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903046,GO:1990234
EggNOG free text desc.transcription initiation from RNA polymerase II promoter
EggNOG OGsCOG2319@1,KOG0263@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-03_001560.1
Exons3
Model size421
Cds size420
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5393.13606.1prot_L-elsbetiae_contig5393.13606.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5393 5241..7559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.7308464-CDS-L-elsbetiae_contig5393:5240..53991622816562.7308464-CDS-L-elsbetiae_contig5393:5240..5399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5393 5241..5399 -
1691683649.3523417-CDS-L-elsbetiae_contig5393:5240..53991691683649.3523417-CDS-L-elsbetiae_contig5393:5240..5399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5393 5241..5399 -
1622816562.7429454-CDS-L-elsbetiae_contig5393:6426..65461622816562.7429454-CDS-L-elsbetiae_contig5393:6426..6546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5393 6427..6546 -
1691683649.3636925-CDS-L-elsbetiae_contig5393:6426..65461691683649.3636925-CDS-L-elsbetiae_contig5393:6426..6546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5393 6427..6546 -
1622816562.7537308-CDS-L-elsbetiae_contig5393:7418..75591622816562.7537308-CDS-L-elsbetiae_contig5393:7418..7559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5393 7419..7559 -
1691683649.3736188-CDS-L-elsbetiae_contig5393:7418..75591691683649.3736188-CDS-L-elsbetiae_contig5393:7418..7559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5393 7419..7559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5393.13606.1

>prot_L-elsbetiae_contig5393.13606.1 ID=prot_L-elsbetiae_contig5393.13606.1|Name=mRNA_L-elsbetiae_contig5393.13606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
QVEREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKS
LMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWS
TSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSPLPFAQA
back to top

mRNA from alignment at L-elsbetiae_contig5393:5240..7559-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5393.13606.1 ID=mRNA_L-elsbetiae_contig5393.13606.1|Name=mRNA_L-elsbetiae_contig5393.13606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2320bp|location=Sequence derived from alignment at L-elsbetiae_contig5393:5240..7559- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGAGCGGGAGTACCGAAGCCTGAGCGAGTTCGTGGGGTCCTCGTG GGAGCTGTACAGACCAGAGCTGGAGGCTGTCACCTTTCCCGTGTTCGTGC ACTGCTACCTGACGCTCGTCATGTTTGACCACGGGGAGGAGGTGCGAAGA GTGGCTGATGGGGGGGGGTCGTGAATCGAAGGGGGCTCCGTCGGATGGTC TCATTGATTTGGTGGTGTGGGCCACGGAAGGTGCCAAGAGGGTGTTACGG TACTGCTGTCGTTGGCACAATCCAAGCGAATGTGACAAGAGCTTTGTTGT GTGTGTGTTTTTGCCTGCTGCGCGCGTACCTTAACCGGCTTGTCGCTCCT CTTAGTAGTAGAAAAAAGCGCCGACATACCGTAGGTGACACAAGATACCA CACCCCCTGGACAGATTTTCAAAGCTCGATCCCTCCCCAGGAAGGAGAGT GCCAGTGCCGAAAGGGGTGACGTTGGAAAGATCTAGTCGACGGCTGTACA AAAATGTGCTGTTTGGTGCTGGCACCCTCTTCGTTACGGACCAAAGGGGC TATAAAATTCGGTCCAGGGGGTGTGCTATATTTGTGCTATCTTGTGTCAC CTACGGTATCCGTAACGGCCCTACATATCCTTCAAAGTTATACCATACAT CTTTTTCGTCGATGGTGTGGTTTTTTCTGCCGCGCACCTAAACCAGCTTG TCGCTCTTCTAGATAAGACACGCAGACGTCCATTTACGTCCGCATGTTGT AGCCCTCGAAGTTAGTTTGTTTTCGTGGATGGTGTGCGTGTGTGTGTGTG TGTGTGTGTGTGTTTTTTTTTTCTGCTGCGCACGCACCTAAATCAGCTTA ACGCCCCTTTTGGTAAAAGAAAACGCAGACATCCGTTACTACGCCCCCAG TCCTCGAAGTTGCCATAAAATAAAAAAATGTCGGTGCTACATACTGCTGC CGTGTGTACATACATACGTGCATGCACATCAATTGGCACGCACATGTGTA TCGACGTGCTTAGGCGAAGAGCTTGATGCGGGCGTGGGGAGGCGAGCACG AGGCGCGGTACAAGGACGAGATGAAGCTGCTGAAGATGGTCACGGCCAAG GAACACGCGGAGGCCTCCGGCTTCTGCCAGCTGGTGAGATTTGTTTCTTT TCCTCCTGGAAAAATAAATCAGGAAATCGAAGAAGGAACCCTCCCCACAA AGGAAAGGGATTCCTTTCTTCTCAGCATTCCCGTGCCGCGCCGTGCCTGC GGCGGGTCTAGCAACAACTGCCTTTCTCTTGGTTGTCTTGGTTGTGGCTG GAGACGAGCTGGTCGTTCTCATACCTTTTCTTCTTTTTTTTGGTCATGGA GCGTTCAGGGATAGCGGATGTACTTCTATCTATTTAGTTGTGGTTGGTGC CATTCTGGAGATGAATACGAACACTATATTAGGCGCGTTTTGGAACGGGT TTGAAGACCTACATCAGTATGGGCTGCCGGCGCTTGGTGTTCCTGCGTTC TTGTGGGCTGTGTGTGTGTGTGTGTGTGCCGCGGCAGAGAGTTCGCGTCA GTGTATCGAACGAACACCTTGAACCGAGTAGCATGGCCGATGGCTCGTGC TTGACAGGCCGGTGTACGCCCGTGGGCCTACAGTATGAAATCCTGTCGAT ATGTACATACCTTCGGTGACACAAGATACCACACCCCCTGGACCGAGTTT TAGAGCTCCACTACTCCGTAACGAAGAGGGTGTCCGCATCAAACGACGCA TTTTCGGACAGCCCTCGACTAGATACTTGCAACGCCACCCCCTTTCGGCA CTGGCACTCTCCTTGCTGGGGAGGAATCGGGCTTTGAAAATCTGTCCAGG GGGTGGGTGGTATCTTGTGTCACCTACGGTACACGACTTACCCGCCGGTG TATGCCTACGTATGTATTCACCCATCGAAACCGAAACATCCACACGGGGA GAGGGAGAGAGCTCCATTTTGATTTCCAATTGTTTCCAAAGGTTCCAGGT TTCCAATGATTTCCAAAGACAACAAAACCACAACATCAATGATCAATGCA ACCACAACCGCAAAAAAAAACAACAAAGCCGCAACATCAATGATCAATGC AACTTACAACCGCAAAAAAACGACAACGACGGCGACGACGATCAAACAAA AAAAATGCAGGTTTTCACGCACACGTTTCGGGCGAAGGTTTGCTGGTCAA CGTCGAAGCTCCTGAACGCCTTCCTGGTGAACACGGGGCTGCTGCTTGTG ATGCACATCCTAAACACCAGGGTCAGCTTCGTCCTGGAGGAGAGGTCCCC TCTGCCCTTTGCGCAGGCGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5393:5240..7559-

>mRNA_L-elsbetiae_contig5393.13606.1 ID=mRNA_L-elsbetiae_contig5393.13606.1|Name=mRNA_L-elsbetiae_contig5393.13606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig5393:5240..7559- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGAGCGGGAGTACCGAAGCCTGAGCGAGTTCGTGGGGTCCTCGTG
GGAGCTGTACAGACCAGAGCTGGAGGCTGTCACCTTTCCCGTGTTCGTGC
ACTGCTACCTGACGCTCGTCATGTTTGACCACGGGGAGGAGCAGGTGGAG
CGGGAGTACCGAAGCCTGAGCGAGTTCGTGGGGTCCTCGTGGGAGCTGTA
CAGACCAGAGCTGGAGGCTGTCACCTTTCCCGTGTTCGTGCACTGCTACC
TGACGCTCGTCATGTTTGACCACGGGGAGGAGGCGAAGAGCTTGATGCGG
GCGTGGGGAGGCGAGCACGAGGCGCGGTACAAGGACGAGATGAAGCTGCT
GAAGATGGTCACGGCCAAGGAACACGCGGAGGCCTCCGGCTTCTGCCAGC
TGGCGAAGAGCTTGATGCGGGCGTGGGGAGGCGAGCACGAGGCGCGGTAC
AAGGACGAGATGAAGCTGCTGAAGATGGTCACGGCCAAGGAACACGCGGA
GGCCTCCGGCTTCTGCCAGCTGGTTTTCACGCACACGTTTCGGGCGAAGG
TTTGCTGGTCAACGTCGAAGCTCCTGAACGCCTTCCTGGTGAACACGGGG
CTGCTGCTTGTGATGCACATCCTAAACACCAGGGTCAGCTTCGTCCTGGA
GGAGAGGTCCCCTCTGCCCTTTGCGCAGGCGGTTTTCACGCACACGTTTC
GGGCGAAGGTTTGCTGGTCAACGTCGAAGCTCCTGAACGCCTTCCTGGTG
AACACGGGGCTGCTGCTTGTGATGCACATCCTAAACACCAGGGTCAGCTT
CGTCCTGGAGGAGAGGTCCCCTCTGCCCTTTGCGCAGGCG
back to top