mRNA_L-elsbetiae_contig5393.13605.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5393.13605.1
Unique NamemRNA_L-elsbetiae_contig5393.13605.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5393.13605.1 vs. uniprot
Match: D7FXT3_ECTSI (TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT3_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 1.560e-64
Identity = 115/161 (71.43%), Postives = 123/161 (76.40%), Query Frame = 1 
Query:    1 VVRCGPGDAFPAALQIDPPDE-------------------ESPAAAATDAPGAGKRASVKERDLKWAAAPPMEVALLKQTERDVSLPLKPPPQPDPADNWPYLRLMLRPLDSSQLKDTLSTPEGGARPFLGNPLSPHVVMLTFYNALDTLCCLKPTRDGMQ 426
            VVRCGP DAFPAAL+    D                    + PAA AT A G G    V+E DLKWAAAPPMEVAL+KQTERDVSLPLKPPPQPDP +NWPYLRL LRPLDS+QLKDTLSTPEGGARPFL NPLSPHVVM+TFYNA+DTLCCLKPTRDGMQ
Sbjct:  244 VVRCGPDDAFPAALRPRSSDXXXXXXXXXXXXXXXXXKATKEPAAPATTA-GRGGGRGVQEEDLKWAAAPPMEVALMKQTERDVSLPLKPPPQPDPPENWPYLRLALRPLDSAQLKDTLSTPEGGARPFLANPLSPHVVMVTFYNAVDTLCCLKPTRDGMQ 403
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BLAST of mRNA_L-elsbetiae_contig5393.13605.1 vs. uniprot
Match: A0A6H5JH71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH71_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 7.360e-47
Identity = 115/283 (40.64%), Postives = 125/283 (44.17%), Query Frame = 1 
Query:    1 VVRCGPGDAFPAALQIDPPDEE-----------SPAAAATDAPGAGKRAS-------VKERDLKWAAAPPMEVALLKQTERD--------------------------------------------------------------------------------------------------------------------------VSLPLKPPPQPDPADNWPYLRLMLRPLDSSQLKDTLSTPEGGARPFLGNPLSPHVVMLTFYNALDTLCCLKPTRDGMQV 429
            VVRCGP DAFPAAL+    DE+           SP + AT  P A            V+E DLKWAAAPPMEVALLKQTERD                                                                                                                          VSLPLKPPPQPDP++NWPYLRL LRPLDS+QLKDTLSTPEGGARPFL NPLSPHVVM+TF+NA+DTLCCLKPTRDGMQV
Sbjct:   42 VVRCGPDDAFPAALRPRSSDEDKSKEESEAARDSPPSKATKEPVAXXXXXXXXXXXXVEEEDLKWAAAPPMEVALLKQTERDAAASGLYYPLSLEPKATKTDPPTTTAAVPSRPTATSPGTNGTANSPPAVATGLTVNTTGXXXXXXXXXXXXXXXXXXXXXXSAIPTXXXXXXXXXXRASRVAAAAEVTEATARRHGGLRQKQVSLPLKPPPQPDPSENWPYLRLALRPLDSAQLKDTLSTPEGGARPFLANPLSPHVVMVTFFNAVDTLCCLKPTRDGMQV 324
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5393.13605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXT3_ECTSI1.560e-6471.43TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JH71_9PHAE7.360e-4740.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5393contigL-elsbetiae_contig5393:605..4306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.5
Seed ortholog evalue2.6e-55
Seed eggNOG ortholog2880.D7FXT3
KEGG koko:K03130
KEGG Pathwayko03022,ko05168,map03022,map05168
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0000428,GO:0001673,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030880,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044798,GO:0046483,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0051321,GO:0051704,GO:0055029,GO:0060255,GO:0061695,GO:0061982,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090575,GO:0097659,GO:0140013,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903046,GO:1990234
EggNOG free text desc.transcription initiation from RNA polymerase II promoter
EggNOG OGsCOG2319@1,KOG0263@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Exons3
Model size429
Cds size429
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5393.13605.1prot_L-elsbetiae_contig5393.13605.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5393 605..4306 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.657724-CDS-L-elsbetiae_contig5393:604..7201622816562.657724-CDS-L-elsbetiae_contig5393:604..720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5393 605..720 -
1691683649.3165934-CDS-L-elsbetiae_contig5393:604..7201691683649.3165934-CDS-L-elsbetiae_contig5393:604..720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5393 605..720 -
1622816562.674686-CDS-L-elsbetiae_contig5393:2424..25451622816562.674686-CDS-L-elsbetiae_contig5393:2424..2545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5393 2425..2545 -
1691683649.330666-CDS-L-elsbetiae_contig5393:2424..25451691683649.330666-CDS-L-elsbetiae_contig5393:2424..2545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5393 2425..2545 -
1622816562.6904068-CDS-L-elsbetiae_contig5393:4114..43061622816562.6904068-CDS-L-elsbetiae_contig5393:4114..4306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5393 4115..4306 -
1691683649.3426363-CDS-L-elsbetiae_contig5393:4114..43061691683649.3426363-CDS-L-elsbetiae_contig5393:4114..4306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5393 4115..4306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5393.13605.1

>prot_L-elsbetiae_contig5393.13605.1 ID=prot_L-elsbetiae_contig5393.13605.1|Name=mRNA_L-elsbetiae_contig5393.13605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
VVRCGPGDAFPAALQIDPPDEESPAAAATDAPGAGKRASVKERDLKWAAA
PPMEVALLKQTERDVSLPLKPPPQPDPADNWPYLRLMLRPLDSSQLKDTL
STPEGGARPFLGNPLSPHVVMLTFYNALDTLCCLKPTRDGMQV
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mRNA from alignment at L-elsbetiae_contig5393:605..4306-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5393.13605.1 ID=mRNA_L-elsbetiae_contig5393.13605.1|Name=mRNA_L-elsbetiae_contig5393.13605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3702bp|location=Sequence derived from alignment at L-elsbetiae_contig5393:605..4306- (Laminarionema elsbetiae ELsaHSoW15)
GTTGTTCGATGCGGGCCCGGTGATGCCTTTCCCGCCGCCCTCCAGATCGA
CCCTCCCGACGAGGAATCGCCGGCGGCGGCGGCAACCGACGCGCCGGGCG
CGGGGAAAAGAGCCAGTGTGAAGGAGAGGGACCTGAAGTGGGCCGCCGCG
CCTCCGATGGAGGTGGCGCTTTTGAAGCAAACGGAGAGAGACGTGAGTTC
CGTCAACTTGCTTAAACGGGGCAGAGGCGGCGGCGGCGGCGGCGTTTTTT
TTTGGGTGTCGGTGCTCCTCCTCTGCTGCTCTTTACCGCCCGCCACTTTT
TTCCATAGCCGCTTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTT
CTCTTTTTTTTGTTGCTGCTGCTTCTCAGTTTTTTATCACAATTGTCTCT
CTTTCTCTCTCTCTCTCTTACTCTCTTTCTCTCTTACTTACTGTCCCTCC
GCCCCTCAATCTGTCCTCCACAACACGCCGCCCGCACCCAAAATGGGGTC
CCCACAGGCGGCCGCCTCGGGCCTGTACTACCCCCTCAGTCTCGAGCCGA
AGGCGGCCAAGAAGGGCGCTGATCCTGCGTCGCCGGCACGCCCGCCAGCG
GCATTAGCCGGAGTTTCGGCAGCAGCGACACCGACACCGAACGGGGCCGC
CAACAGCTCCTCGCCCACCGGCGGCGCCGGGCTGACGGTAAACACTGACA
GCGGCGATGGGGCGGCGGGGGCGGCCGCGGCGGCGGCGGCGGCAGCGGCG
GCCATCCCCACGGGGAGCGCGGCGGCAGCGGCGGCGAGGGCGCGCGCGAG
CCGGGTGGCGGCGGCGTCCGAGGTTACTGAGGCCACGGCGCGGCGGCACG
GCGGCTTGCGGCAAAGACAGGTATGGTATATGTGTGTATTTAGGAGTAAT
TCATTGGATTGGGTTGGAAAACATGCTTGTTTGTTTGTCTGGCAGGCATG
CTAGAGAAGCAGCAGGCACGCAGTGTAAGAGTGCCGGAGGGGGCAAGGAT
AGTAGTGGTTTTGATTTGATTCGCGGGTCTTTTATTTTTTCCCCCGTCTT
GCGTCACCTACGGTATGTAGGTATGTACATTGAACTAAGAAATATACGGG
ATGTTGCAGCCCAGGTGCTGTGCAGCGGGTCGCGGCATAAACAGGCTTGT
GCCATTATCGGAAAGCACGTTATCGCACGGGCTTTATTCAGAGTACAGCA
GCAGTAGTACCGTAGGTGACACTTGCAGGATACCACCCACCCCCTGGACA
GATTTTCAAAGCCCGGTTCCTCCCCAGCAAGGAGAGTGCCAGTGCCGAAA
GGGGATGTCGTTGGAAAGATCTAGCCGAGGGCTGTCCGAAAATGTGTCGT
TTGGTGCTGGCACCCTCTTCGTTGCGGAGTAATATTGTAGAGCTCTAAAA
GTCAGTCCAGGGGGGTGTCTGGTATCTTGTGTCACCTACGGTAGGCTATT
TTGCCTGGTCCGCTCATGCGTGGAGGGCACCTTAAGTCGTTCTTCTGTTT
AGAGCACGTTGAGGCGCTTCTTTTGTTGCCTCCACTTCGTCGTCGCTCGC
GCTCTGCACTTTTAACTCCTAGATAGCGTCTCAGTTTTCCGACTCCGCTA
CCGCCGTTGTTGGTTTCTGCCAGCACGTCCGTCCACCATGTTAGTTGTTC
TTTTTCCACACTACTGTTCAAGCGTATCAACATATACATGCAGATCCAAC
CTTCCATGCTCCGTGCCCCCCCTCCCCCTCCAAACCCATGCGCGGCGCCG
CCGCTCATCAGGTGAGCCTTCCGCTGAAGCCGCCGCCGCAGCCGGACCCT
GCCGATAACTGGCCCTACCTCAGGCTAATGCTTCGGCCGCTCGACTCCAG
CCAGCTCAAGGATACGCTCTCTACTCCCGAAGGTGATTTTGTTCGTGTTT
TCGATTCTTGTGGCTTTCGGTTCTTGTGCTTGGGGGGGTTGTTTTCCGCC
CATATGGCGGAGCGCGGTACCTACGATATCGCTTTCTGTCATAATTTGCT
ATAGCACTATTGTGCGGAGTCCCCAACAGCTACTGCTGTCGGAGTGTTGT
AGGGTGGCTTTCGATGGTTTGGATGCTGTTGGTTGCTTGCGTTTTTTTGT
GTGTGCTGGCTAGCTGGTGGAAGTTTTTTGCAATCACCGGAGCCCCCTAC
GCGTGTTTTGTTGGGGCTGTTTTATTTCAAGCGTTACTTTGGAATATGTG
ACTGCCGCCTCGGTGTGCTCTCTATCAGCGCCTACCGTAGGTGACACAAG
ATACCACCCCCCCCTGGACAGATTTTCCAAGCTCGATTCGTTCCCAGCAA
GAAGAGTTCCAGCGCCGGAATGGAGTGGGGTTGAAAAATCTGTCCAGGGG
TGGGGGTGGTATCTTGTGTCACCTACGGTAGGCGCTGATACAGAGCACAC
CGACGCCGGAATGGAGTGGGGTTGAAAAGATCTGGTCGAGGGCTGTCCGA
AAATGTGTCGTTTGTTACTGGCACCCTCTCCGTTACGGAGGAATCGAGCT
CTAAAACTCAGTCCAAGGAGGGGGGGTGGTATCCTGTGTCACCTACGGTA
GACCGACCCTCCCCCGAGTGTTTGCAATATACTGGGAGACGCTGCGCATG
GCTGATTACACGCCTCGCCGGCGTCTGTCCGTCTTTGGCATTTGTTTTGA
CGCGTTTGGTGGTCGCATGACACGCGCTTCGTCCTGTTTCCGATCACCGT
CAATACTTTTCAATTTTCGCTCTCGCGCGTTGTGTTCGGCTTCGGTGTTC
CAAGAAAGAAAAACGCCTCTTTTTTTCTTTGTGTCGTTTCCGGTGATTGC
TCTCTCGAGAGCTCCCCCGGTTCGGTGCTCTAGCAGTTCGGTTTGCTGTT
GTTGTCTTCACACTAAAAACCGCCCCGATCTCTCTATCCAGTACACCTCC
ATGAGTCCGCGTACTAATCCAACACTGACGCGGTCAATTCCCGTTGTCAC
AGGATAACTTACCCTCAAAAGGGTATAGAACTACTGAAAAATAAAAATAA
AATAAAATAAAATGGACCCGAGGGGTCCAAGGTTTGTGCCGAACATCAAT
TCAAGTCTCGTTTGATGGGTTTTTTGCTTTTCGGTGCTCGTTTCCGACGA
TCGCTCTCTAGAGAGCTCTCGCGGTTCGGTGCTCTCGCGGTTCGGTTCGT
GCCGAAAAATAATCCAAGTCTCGTTTGATGGAATTTTTGCTCTTCGGGGC
TCGTTTCCGATTATCGCTCTCTAGCACTACATGTAGAGAGCTCCCGCGGT
TCGGTTTGCCAGTTTCGTTTGATGTGTGTTTTGCTTGGTCCATTCATTCA
GGTGCCCCTGCCCCATCGGTGGTAAGCCTCCTCTCTGCGGTTTCTGTTGG
GATTTGTCAGAAGATAAATTGGTGTTGATATTCTCGCGATCCCCTGCCCC
CCCCCCCCCCCCCGTGTTTTTTTTGGCACCCCCCGCGGGGGCGGGCCCCT
TTTTGGGCACCCCCCCCCCCCCCCCCCGGGGGTGGNNNNNNNNNNTCTGT
TGGGATTTGTCAGAAGATAAATTGGTGTTGATATTCTCGCGATCCCCTGC
CCCCCCCCCCCCGTGTTGTATCTTGGGACACACCAGGCGGGGCTAGGCCT
TTCTTGGGCAACCCGCTCTCTCCGCACGTGGTGATGCTGACCTTCTACAA
CGCGCTCGACACACTGTGCTGCTTGAAGCCGACCCGGGACGGCATGCAGG
TA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5393:605..4306-

>mRNA_L-elsbetiae_contig5393.13605.1 ID=mRNA_L-elsbetiae_contig5393.13605.1|Name=mRNA_L-elsbetiae_contig5393.13605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig5393:605..4306- (Laminarionema elsbetiae ELsaHSoW15)
GTTGTTCGATGCGGGCCCGGTGATGCCTTTCCCGCCGCCCTCCAGATCGA
CCCTCCCGACGAGGAATCGCCGGCGGCGGCGGCAACCGACGCGCCGGGCG
CGGGGAAAAGAGCCAGTGTGAAGGAGAGGGACCTGAAGTGGGCCGCCGCG
CCTCCGATGGAGGTGGCGCTTTTGAAGCAAACGGAGAGAGACGTTGTTCG
ATGCGGGCCCGGTGATGCCTTTCCCGCCGCCCTCCAGATCGACCCTCCCG
ACGAGGAATCGCCGGCGGCGGCGGCAACCGACGCGCCGGGCGCGGGGAAA
AGAGCCAGTGTGAAGGAGAGGGACCTGAAGTGGGCCGCCGCGCCTCCGAT
GGAGGTGGCGCTTTTGAAGCAAACGGAGAGAGACGTGAGCCTTCCGCTGA
AGCCGCCGCCGCAGCCGGACCCTGCCGATAACTGGCCCTACCTCAGGCTA
ATGCTTCGGCCGCTCGACTCCAGCCAGCTCAAGGATACGCTCTCTACTCC
CGAAGGTGAGCCTTCCGCTGAAGCCGCCGCCGCAGCCGGACCCTGCCGAT
AACTGGCCCTACCTCAGGCTAATGCTTCGGCCGCTCGACTCCAGCCAGCT
CAAGGATACGCTCTCTACTCCCGAAGGCGGGGCTAGGCCTTTCTTGGGCA
ACCCGCTCTCTCCGCACGTGGTGATGCTGACCTTCTACAACGCGCTCGAC
ACACTGTGCTGCTTGAAGCCGACCCGGGACGGCATGCAGGTAGCGGGGCT
AGGCCTTTCTTGGGCAACCCGCTCTCTCCGCACGTGGTGATGCTGACCTT
CTACAACGCGCTCGACACACTGTGCTGCTTGAAGCCGACCCGGGACGGCA
TGCAGGTA
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