mRNA_L-elsbetiae_contig5388.13597.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5388.13597.1
Unique NamemRNA_L-elsbetiae_contig5388.13597.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5388.13597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5388contigL-elsbetiae_contig5388:4209..4514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size307
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816561.9955091-CDS-L-elsbetiae_contig5388:4208..45111622816561.9955091-CDS-L-elsbetiae_contig5388:4208..4511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5388 4209..4511 +
1691683648.9473782-CDS-L-elsbetiae_contig5388:4208..45111691683648.9473782-CDS-L-elsbetiae_contig5388:4208..4511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5388 4209..4511 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.0086868-UTR-L-elsbetiae_contig5388:4511..45141622816562.0086868-UTR-L-elsbetiae_contig5388:4511..4514Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5388 4512..4514 +
1691683648.9559066-UTR-L-elsbetiae_contig5388:4511..45141691683648.9559066-UTR-L-elsbetiae_contig5388:4511..4514Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5388 4512..4514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5388.13597.1prot_L-elsbetiae_contig5388.13597.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5388 4209..4511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5388.13597.1

>prot_L-elsbetiae_contig5388.13597.1 ID=prot_L-elsbetiae_contig5388.13597.1|Name=mRNA_L-elsbetiae_contig5388.13597.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
TAHALVLSFFSHRRWHRSHGEHITLLSAREISIARSVKRRRCCCFYCLVS
RRLCSRAGRGCYKRPVRLLRLNMRWVVSLRKYTLYQVARTLDLLVLHRRR
*
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mRNA from alignment at L-elsbetiae_contig5388:4209..4514+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5388.13597.1 ID=mRNA_L-elsbetiae_contig5388.13597.1|Name=mRNA_L-elsbetiae_contig5388.13597.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=306bp|location=Sequence derived from alignment at L-elsbetiae_contig5388:4209..4514+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGCCCATGCCCTCGTCCTCTCTTTCTTCTCCCACCGACGATGGCATAG
ATCTCACGGAGAACACATCACTTTGCTCTCTGCTCGGGAGATCAGTATTG
CTCGATCCGTCAAACGGCGTCGCTGCTGCTGCTTCTACTGCCTCGTCTCT
CGACGACTCTGCTCTAGGGCTGGCCGAGGATGCTACAAGCGGCCGGTTAG
GCTGTTGCGATTGAATATGCGGTGGGTCGTGTCCCTGCGCAAATACACCC
TCTACCAGGTTGCTCGGACCTTGGACCTGCTGGTGCTCCACCGCCGCCGT
TGACCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5388:4209..4514+

>mRNA_L-elsbetiae_contig5388.13597.1 ID=mRNA_L-elsbetiae_contig5388.13597.1|Name=mRNA_L-elsbetiae_contig5388.13597.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig5388:4209..4514+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGCCCATGCCCTCGTCCTCTCTTTCTTCTCCCACCGACGATGGCATAG
ATCTCACGGAGAACACATCACTTTGCTCTCTGCTCGGGAGATCAGTATTG
CTCGATCCGTCAAACGGCGTCGCTGCTGCTGCTTCTACTGCCTCGTCTCT
CGACGACTCTGCTCTAGGGCTGGCCGAGGATGCTACAAGCGGCCGGTTAG
GCTGTTGCGATTGAATATGCGGTGGGTCGTGTCCCTGCGCAAATACACCC
TCTACCAGGTTGCTCGGACCTTGGACCTGCTGGTGCTCCACCGCCGCCGT
TGAACCGCCCATGCCCTCGTCCTCTCTTTCTTCTCCCACCGACGATGGCA
TAGATCTCACGGAGAACACATCACTTTGCTCTCTGCTCGGGAGATCAGTA
TTGCTCGATCCGTCAAACGGCGTCGCTGCTGCTGCTTCTACTGCCTCGTC
TCTCGACGACTCTGCTCTAGGGCTGGCCGAGGATGCTACAAGCGGCCGGT
TAGGCTGTTGCGATTGAATATGCGGTGGGTCGTGTCCCTGCGCAAATACA
CCCTCTACCAGGTTGCTCGGACCTTGGACCTGCTGGTGCTCCACCGCCGC
CGTTGA
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