mRNA_L-elsbetiae_contig5378.13582.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 348 bits (893), Expect = 8.620e-109 Identity = 178/241 (73.86%), Postives = 200/241 (82.99%), Query Frame = 2 Query: 47 YVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQ----------------HNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSGYIFILTG-VISASSTLQKVTAQSTVHAELIAMATAAREAL 718 YVDDCTLAG+TPSV QDLKEQLS KF+MTDGGPA LLLGMEISQ DGEI VSQ H YV+N+LDK+ M DC ATPG+G EIE+EP+NAI LN+ D K YQGIVGSLLFLTNTTRWEIGY+VM+LCRGMNKPTNQH+ GAKRVLRYLRG PDMP+KFRRGQW L YCDA+FAG+SE LQKRSS+GYIFIL G V+SA+STLQK+TAQS+VHAE+IAMA AAREA+ Sbjct: 88 YVDDCTLAGRTPSVGQDLKEQLSDKFKMTDGGPAELLLGMEISQRDGEITVSQXXXXXXXXXXXXXXXXHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAICLNEEDMKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMAAAAREAI 328
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5JRF1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF1_9PHAE) HSP 1 Score: 329 bits (844), Expect = 1.160e-103 Identity = 187/340 (55.00%), Postives = 212/340 (62.35%), Query Frame = 2 Query: 2 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQHNYVLNLLDK---------------------------FNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQK-------------------------------------------------------------------------RSSSGYIFILTG-VISASSTLQKVTAQSTVHAELIAMATAAREAL 718 +YVYG G YA LCVYVDDCTLAG+TPSVVQDLK+QLS KF+MTDGGPA LLLGMEISQ D EI VSQH YV+N+LDK + M DC ATPG+G EIE+EP+NAIYL++ D K YQGIV SLLFLTNTTRWEIGY+VM+LCRGMNKPTNQH+ GAKRVLRYLRG PDMP+KFRRGQW L YCDA+FAG+SE LQK RSS+GYIFIL G V+SA+STLQK+TAQS+VHAE+IAMATAAREA+ Sbjct: 89 VYVYGTGPIYAKLCVYVDDCTLAGRTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQRDEEITVSQHKYVMNILDKAEXXXXXXXXXXXXXXXXXXXXXXXXXYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVLSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKCSSTGYTFILAGGVISAASTLQKXNQHMVGAKRVLRYLQGCPDMRLKFRRGQWGDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAI 428
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 329 bits (843), Expect = 3.900e-97 Identity = 155/195 (79.49%), Postives = 174/195 (89.23%), Query Frame = 2 Query: 2 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQK 586 +YVYG G TYA+LCVYVDDCTLAGKTPSVVQDLK+QLS KF+MTDGGPA LLLGMEISQ+DGEI VSQH YV+N+LDK+ M DC ATPG+G EIE+EP+NAIYL++ D K YQGIVGSLLFLTNTTRWEIGY+VM+LCRGMNKPTNQH+ GAKRVLRYLRG PDMP+KFRRGQW L YCDA+FAG+SE LQK Sbjct: 1072 VYVYGAGPTYAILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQK 1266
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5KFG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG1_9PHAE) HSP 1 Score: 278 bits (712), Expect = 2.250e-87 Identity = 132/173 (76.30%), Postives = 151/173 (87.28%), Query Frame = 2 Query: 2 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRR 520 +YVYG G TYA+LCVYVD+CTLAG+TPSVVQD K+QLS KF MTDGGPA LLLGMEI Q DG+I VSQH YV N+L+K+ M DC ATPG+G EIE+EP+NAIYL+D D K YQGIVGSLLFLT+TTRWEIGY+VM+LCRGMNKPT+QH+ GAKRVLRYLRG PDMP+KFRR Sbjct: 88 VYVYGAGPTYAILCVYVDNCTLAGRTPSVVQDWKKQLSDKFNMTDGGPAELLLGMEIYQRDGDITVSQHKYVTNILNKYQMVDCKPAATPGSGPEIEQEPENAIYLSDEDKKPYQGIVGSLLFLTHTTRWEIGYAVMVLCRGMNKPTDQHMVGAKRVLRYLRGCPDMPLKFRR 260
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE) HSP 1 Score: 192 bits (487), Expect = 2.130e-50 Identity = 91/116 (78.45%), Postives = 101/116 (87.07%), Query Frame = 2 Query: 98 LKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTN 445 LK+QLS KF+MTDGGPA LLLGMEISQ DGEI VSQH YV+N+LDK+ M DC ATPG+G EIE+EP+NAIYL+ D K YQGIVGSLLFLTNTTRWEIGY+VMILCRGMNKPTN Sbjct: 513 LKKQLSDKFKMTDGGPAELLLGMEISQRDGEITVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSKEDKKLYQGIVGSLLFLTNTTRWEIGYAVMILCRGMNKPTN 628
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5L4S3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S3_9PHAE) HSP 1 Score: 151 bits (381), Expect = 1.140e-39 Identity = 73/101 (72.28%), Postives = 85/101 (84.16%), Query Frame = 2 Query: 8 VYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNA 310 VYG G TYA+LCVYVD+CTLAG TPSVVQD+K+QLS KF+MTDGGPA LLLGMEI+Q+DGEI VSQH +V+N+LDK+ M +C VATPG G EIE P NA Sbjct: 77 VYGAGPTYAILCVYVDNCTLAGTTPSVVQDMKKQLSNKFKMTDGGPAELLLGMEIAQSDGEITVSQHKHVMNILDKYQMTNCKPVATPGCGPEIE--PGNA 175
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 159 bits (401), Expect = 1.300e-39 Identity = 101/277 (36.46%), Postives = 152/277 (54.87%), Query Frame = 2 Query: 2 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEI--SQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSGYIFILTGV-ISASSTLQKVTAQSTVHAELIAMATAAREAL-CSCRANCYGNGSGGGTLP*RCHLGTWLSVLSDPS 820 +Y+Y H L +YVDD LAG + +K +L ++F+MTD G A+L+LGMEI + + +SQ Y ++L++F M +TPG G+EI L++ +T+ YQGIVGSL+++ R++I Y+ L R M KP+ H+ AK LRYL G D I +++G +KL + D+N+A + +S+S Y+ +L +S S LQ +TA ST+ AEL+A A A +EA+ CS G G LP C L L + S Sbjct: 103 VYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPD--NGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRS 377
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 162 bits (410), Expect = 6.660e-39 Identity = 89/242 (36.78%), Postives = 142/242 (58.68%), Query Frame = 2 Query: 2 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQT--DGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSGYIFILTG-VISASSTLQKVTAQSTVHAELIAMATAAREAL 718 +Y++ G +L +YVDD + G +V K++L F MTD G ++G+E+ + G + +SQ Y ++L ++ M+ V+TPG GAE+ E L D + +Q I GSLL+L TR+++ Y+V L R P H+A AK +LRYLRG PD+PI +++GQ++L + D++F + RS++GY+F L G +IS + Q + AQ+TV AEL A++ +AREA+ Sbjct: 1180 VYIFVSGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPD--NGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAV 1419
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5JW03_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW03_9PHAE) HSP 1 Score: 149 bits (376), Expect = 6.530e-37 Identity = 85/242 (35.12%), Postives = 137/242 (56.61%), Query Frame = 2 Query: 2 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTD--GEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSGYIFILTG-VISASSTLQKVTAQSTVHAELIAMATAAREAL 718 +Y++ +L +YVDD + G +V K++L F MTD G ++G+ + + G + +SQ Y ++ ++ M+ V+TPG GAE+ E L D + +Q I GSLL+L TR++ Y+V L R P H+A AK +LRYLRG PD+PI +++GQ++L + D++F + RS +GY+F L G +IS + Q + AQ+T+ AEL A++ +AREA+ Sbjct: 90 VYIFVRRDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIAVQRDYELGTLAISQGPYARDIQQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDPSYAVHQLKRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPD--NGRSITGYLFFLGGGLISYGAKAQTLAAQNTLEAELQALSFSAREAV 329
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 155 bits (393), Expect = 8.430e-37 Identity = 100/277 (36.10%), Postives = 151/277 (54.51%), Query Frame = 2 Query: 2 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEI--SQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSGYIFILTGV-ISASSTLQKVTAQSTVHAELIAMATAAREAL-CSCRANCYGNGSGGGTLP*RCHLGTWLSVLSDPS 820 +Y+Y H L +YVDD LAG + +K +L ++F+MTD G A+L+L MEI + + +SQ Y ++L++F M +TPG G+EI L++ +T+ YQGIVGSL+++ R++I Y+ L R M KP+ H+ AK LRYL G D I +++G +KL + D+N+A + +S+S Y+ +L +S S LQ +TA ST+ AEL+A A A +EA+ CS G G LP C L L + S Sbjct: 663 VYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPD--NGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRS 937 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5378.13582.1 >prot_L-elsbetiae_contig5378.13582.1 ID=prot_L-elsbetiae_contig5378.13582.1|Name=mRNA_L-elsbetiae_contig5378.13582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=258bp MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATback to top mRNA from alignment at L-elsbetiae_contig5378:507..2040+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5378.13582.1 ID=mRNA_L-elsbetiae_contig5378.13582.1|Name=mRNA_L-elsbetiae_contig5378.13582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1534bp|location=Sequence derived from alignment at L-elsbetiae_contig5378:507..2040+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5378:507..2040+ >mRNA_L-elsbetiae_contig5378.13582.1 ID=mRNA_L-elsbetiae_contig5378.13582.1|Name=mRNA_L-elsbetiae_contig5378.13582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1548bp|location=Sequence derived from alignment at L-elsbetiae_contig5378:507..2040+ (Laminarionema elsbetiae ELsaHSoW15)back to top |