mRNA_L-elsbetiae_contig5378.13582.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5378.13582.1
Unique NamemRNA_L-elsbetiae_contig5378.13582.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 348 bits (893), Expect = 8.620e-109
Identity = 178/241 (73.86%), Postives = 200/241 (82.99%), Query Frame = 2
Query:   47 YVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQ----------------HNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSGYIFILTG-VISASSTLQKVTAQSTVHAELIAMATAAREAL 718
            YVDDCTLAG+TPSV QDLKEQLS KF+MTDGGPA LLLGMEISQ DGEI VSQ                H YV+N+LDK+ M DC   ATPG+G EIE+EP+NAI LN+ D K YQGIVGSLLFLTNTTRWEIGY+VM+LCRGMNKPTNQH+ GAKRVLRYLRG PDMP+KFRRGQW L  YCDA+FAG+SE LQKRSS+GYIFIL G V+SA+STLQK+TAQS+VHAE+IAMA AAREA+
Sbjct:   88 YVDDCTLAGRTPSVGQDLKEQLSDKFKMTDGGPAELLLGMEISQRDGEITVSQXXXXXXXXXXXXXXXXHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAICLNEEDMKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMAAAAREAI 328          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5JRF1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF1_9PHAE)

HSP 1 Score: 329 bits (844), Expect = 1.160e-103
Identity = 187/340 (55.00%), Postives = 212/340 (62.35%), Query Frame = 2
Query:    2 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQHNYVLNLLDK---------------------------FNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQK-------------------------------------------------------------------------RSSSGYIFILTG-VISASSTLQKVTAQSTVHAELIAMATAAREAL 718
            +YVYG G  YA LCVYVDDCTLAG+TPSVVQDLK+QLS KF+MTDGGPA LLLGMEISQ D EI VSQH YV+N+LDK                           + M DC   ATPG+G EIE+EP+NAIYL++ D K YQGIV SLLFLTNTTRWEIGY+VM+LCRGMNKPTNQH+ GAKRVLRYLRG PDMP+KFRRGQW L  YCDA+FAG+SE LQK                                                                         RSS+GYIFIL G V+SA+STLQK+TAQS+VHAE+IAMATAAREA+
Sbjct:   89 VYVYGTGPIYAKLCVYVDDCTLAGRTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQRDEEITVSQHKYVMNILDKAEXXXXXXXXXXXXXXXXXXXXXXXXXYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVLSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKCSSTGYTFILAGGVISAASTLQKXNQHMVGAKRVLRYLQGCPDMRLKFRRGQWGDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAI 428          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 3.900e-97
Identity = 155/195 (79.49%), Postives = 174/195 (89.23%), Query Frame = 2
Query:    2 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQK 586
            +YVYG G TYA+LCVYVDDCTLAGKTPSVVQDLK+QLS KF+MTDGGPA LLLGMEISQ+DGEI VSQH YV+N+LDK+ M DC   ATPG+G EIE+EP+NAIYL++ D K YQGIVGSLLFLTNTTRWEIGY+VM+LCRGMNKPTNQH+ GAKRVLRYLRG PDMP+KFRRGQW L  YCDA+FAG+SE LQK
Sbjct: 1072 VYVYGAGPTYAILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQK 1266          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5KFG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG1_9PHAE)

HSP 1 Score: 278 bits (712), Expect = 2.250e-87
Identity = 132/173 (76.30%), Postives = 151/173 (87.28%), Query Frame = 2
Query:    2 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRR 520
            +YVYG G TYA+LCVYVD+CTLAG+TPSVVQD K+QLS KF MTDGGPA LLLGMEI Q DG+I VSQH YV N+L+K+ M DC   ATPG+G EIE+EP+NAIYL+D D K YQGIVGSLLFLT+TTRWEIGY+VM+LCRGMNKPT+QH+ GAKRVLRYLRG PDMP+KFRR
Sbjct:   88 VYVYGAGPTYAILCVYVDNCTLAGRTPSVVQDWKKQLSDKFNMTDGGPAELLLGMEIYQRDGDITVSQHKYVTNILNKYQMVDCKPAATPGSGPEIEQEPENAIYLSDEDKKPYQGIVGSLLFLTHTTRWEIGYAVMVLCRGMNKPTDQHMVGAKRVLRYLRGCPDMPLKFRR 260          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 2.130e-50
Identity = 91/116 (78.45%), Postives = 101/116 (87.07%), Query Frame = 2
Query:   98 LKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTN 445
            LK+QLS KF+MTDGGPA LLLGMEISQ DGEI VSQH YV+N+LDK+ M DC   ATPG+G EIE+EP+NAIYL+  D K YQGIVGSLLFLTNTTRWEIGY+VMILCRGMNKPTN
Sbjct:  513 LKKQLSDKFKMTDGGPAELLLGMEISQRDGEITVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSKEDKKLYQGIVGSLLFLTNTTRWEIGYAVMILCRGMNKPTN 628          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5L4S3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S3_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.140e-39
Identity = 73/101 (72.28%), Postives = 85/101 (84.16%), Query Frame = 2
Query:    8 VYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNA 310
            VYG G TYA+LCVYVD+CTLAG TPSVVQD+K+QLS KF+MTDGGPA LLLGMEI+Q+DGEI VSQH +V+N+LDK+ M +C  VATPG G EIE  P NA
Sbjct:   77 VYGAGPTYAILCVYVDNCTLAGTTPSVVQDMKKQLSNKFKMTDGGPAELLLGMEIAQSDGEITVSQHKHVMNILDKYQMTNCKPVATPGCGPEIE--PGNA 175          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.300e-39
Identity = 101/277 (36.46%), Postives = 152/277 (54.87%), Query Frame = 2
Query:    2 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEI--SQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSGYIFILTGV-ISASSTLQKVTAQSTVHAELIAMATAAREAL-CSCRANCYGNGSGGGTLP*RCHLGTWLSVLSDPS 820
            +Y+Y H      L +YVDD  LAG     +  +K +L ++F+MTD G A+L+LGMEI   +    + +SQ  Y  ++L++F M      +TPG G+EI         L++ +T+ YQGIVGSL+++    R++I Y+   L R M KP+  H+  AK  LRYL G  D  I +++G +KL  + D+N+A   +    +S+S Y+ +L    +S  S LQ +TA ST+ AEL+A A A +EA+ CS      G G     LP  C     L  L + S
Sbjct:  103 VYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPD--NGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRS 377          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 6.660e-39
Identity = 89/242 (36.78%), Postives = 142/242 (58.68%), Query Frame = 2
Query:    2 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQT--DGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSGYIFILTG-VISASSTLQKVTAQSTVHAELIAMATAAREAL 718
            +Y++  G    +L +YVDD  + G    +V   K++L   F MTD G    ++G+E+ +    G + +SQ  Y  ++L ++ M+    V+TPG GAE+  E      L   D + +Q I GSLL+L   TR+++ Y+V  L R    P   H+A AK +LRYLRG PD+PI +++GQ++L  + D++F    +    RS++GY+F L G +IS  +  Q + AQ+TV AEL A++ +AREA+
Sbjct: 1180 VYIFVSGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPD--NGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAV 1419          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5JW03_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW03_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 6.530e-37
Identity = 85/242 (35.12%), Postives = 137/242 (56.61%), Query Frame = 2
Query:    2 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTD--GEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSGYIFILTG-VISASSTLQKVTAQSTVHAELIAMATAAREAL 718
            +Y++       +L +YVDD  + G    +V   K++L   F MTD G    ++G+ + +    G + +SQ  Y  ++  ++ M+    V+TPG GAE+  E      L   D + +Q I GSLL+L   TR++  Y+V  L R    P   H+A AK +LRYLRG PD+PI +++GQ++L  + D++F    +    RS +GY+F L G +IS  +  Q + AQ+T+ AEL A++ +AREA+
Sbjct:   90 VYIFVRRDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIAVQRDYELGTLAISQGPYARDIQQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDPSYAVHQLKRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPD--NGRSITGYLFFLGGGLISYGAKAQTLAAQNTLEAELQALSFSAREAV 329          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 8.430e-37
Identity = 100/277 (36.10%), Postives = 151/277 (54.51%), Query Frame = 2
Query:    2 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEI--SQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSGYIFILTGV-ISASSTLQKVTAQSTVHAELIAMATAAREAL-CSCRANCYGNGSGGGTLP*RCHLGTWLSVLSDPS 820
            +Y+Y H      L +YVDD  LAG     +  +K +L ++F+MTD G A+L+L MEI   +    + +SQ  Y  ++L++F M      +TPG G+EI         L++ +T+ YQGIVGSL+++    R++I Y+   L R M KP+  H+  AK  LRYL G  D  I +++G +KL  + D+N+A   +    +S+S Y+ +L    +S  S LQ +TA ST+ AEL+A A A +EA+ CS      G G     LP  C     L  L + S
Sbjct:  663 VYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPD--NGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRS 937          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J897_9PHAE8.620e-10973.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRF1_9PHAE1.160e-10355.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY84_9PHAE3.900e-9779.49Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KFG1_9PHAE2.250e-8776.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCZ9_9PHAE2.130e-5078.45Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L4S3_9PHAE1.140e-3972.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5U2_9PHAE1.300e-3936.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHG5_9PHAE6.660e-3936.78Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5JW03_9PHAE6.530e-3735.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE8.430e-3736.10Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5378contigL-elsbetiae_contig5378:507..2040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score143.3
Seed ortholog evalue1.6e-31
Seed eggNOG ortholog981085.XP_010091283.1
KEGG koko:K05665,ko:K05666,ko:K05670
KEGG TC3.A.1.208,3.A.1.208.2,3.A.1.208.8
KEGG Pathwayko01523,ko01524,ko02010,ko04071,ko04976,ko04977,ko05206,map01523,map01524,map02010,map04071,map04976,map04977,map05206
Hectar predicted targeting categoryother localisation
GOsGO:0000325,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005911,GO:0006810,GO:0008150,GO:0009506,GO:0009605,GO:0009607,GO:0009624,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030054,GO:0031090,GO:0042623,GO:0042626,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055044,GO:0055085,GO:0098588,GO:0098805
EggNOG free text desc.ABC transporter C family member
EggNOG OGs37PYD@33090,3G8VE@35493,4JDGI@91835,COG1132@1,COG2801@1,KOG0017@2759,KOG0054@2759
COG Functional cat.Q
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size1534
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5378.13582.1prot_L-elsbetiae_contig5378.13582.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5378 508..1281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816560.3245997-UTR-L-elsbetiae_contig5378:506..5071622816560.3245997-UTR-L-elsbetiae_contig5378:506..507Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5378 507..507 +
1691683647.7643442-UTR-L-elsbetiae_contig5378:506..5071691683647.7643442-UTR-L-elsbetiae_contig5378:506..507Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5378 507..507 +
1622816560.3516023-UTR-L-elsbetiae_contig5378:1281..20401622816560.3516023-UTR-L-elsbetiae_contig5378:1281..2040Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5378 1282..2040 +
1691683647.7921793-UTR-L-elsbetiae_contig5378:1281..20401691683647.7921793-UTR-L-elsbetiae_contig5378:1281..2040Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5378 1282..2040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816560.3381507-CDS-L-elsbetiae_contig5378:507..12811622816560.3381507-CDS-L-elsbetiae_contig5378:507..1281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5378 508..1281 +
1691683647.7780852-CDS-L-elsbetiae_contig5378:507..12811691683647.7780852-CDS-L-elsbetiae_contig5378:507..1281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5378 508..1281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5378.13582.1

>prot_L-elsbetiae_contig5378.13582.1 ID=prot_L-elsbetiae_contig5378.13582.1|Name=mRNA_L-elsbetiae_contig5378.13582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=258bp
MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPAT
LLLGMEISQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREP
DNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQH
LAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSG
YIFILTGVISASSTLQKVTAQSTVHAELIAMATAAREALCSCRANCYGNG
SGGGTLP*
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mRNA from alignment at L-elsbetiae_contig5378:507..2040+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5378.13582.1 ID=mRNA_L-elsbetiae_contig5378.13582.1|Name=mRNA_L-elsbetiae_contig5378.13582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1534bp|location=Sequence derived from alignment at L-elsbetiae_contig5378:507..2040+ (Laminarionema elsbetiae ELsaHSoW15)
CATGTACGTGTATGGACATGGATCGACATACGCAATGTTATGTGTATACG TCGACGACTGCACATTGGCTGGAAAGACACCAAGCGTTGTACAAGATCTA AAGGAACAACTCTCAAGGAAATTCCGGATGACTGATGGTGGACCAGCTAC TCTACTACTGGGAATGGAGATATCCCAAACTGACGGTGAAATACCCGTGA GCCAGCACAACTATGTGCTAAATCTACTCGACAAGTTCAACATGAAGGAT TGCACCACGGTTGCCACTCCGGGAACTGGAGCGGAGATCGAACGAGAACC AGACAACGCAATCTACTTGAACGACATGGACACAAAATTCTACCAGGGAA TTGTCGGGAGCTTGTTGTTTCTGACGAACACAACCCGGTGGGAAATAGGT TACTCTGTGATGATTTTGTGCCGCGGCATGAATAAGCCAACGAATCAACA CCTTGCTGGGGCCAAAAGGGTTCTGAGATACTTGCGAGGAAAACCAGACA TGCCAATCAAGTTCAGGAGAGGACAGTGGAAGCTACATGGCTACTGCGAC GCCAACTTTGCGGGAGCTTCTGAGGCACTACAGAAGAGATCAAGCAGCGG CTACATTTTCATATTGACGGGAGTTATCAGTGCATCATCAACTCTACAAA AAGTAACTGCCCAATCAACAGTTCATGCCGAGCTAATTGCTATGGCAACG GCAGCGAGGGAGGCACTATGTTCATGCCGAGCTAATTGTTATGGCAACGG CAGCGGGGGAGGCACTCTACCTTGAAGGTGTCATCTCGGAACTTGGCTTT CCGTGCTCAGCGATCCCTCTTCACAGCGACAGCAGCGGACCTCTAAGCTC AGCAGGCAACGGATCCTTTCGAGGCCGCAGCAAATTTCTGAGCACCAGAT ATTACCTCTTACGACAGAGTGTGGACAAGGGAGACCTCATCTTGAGATTT GTCAAGGGCGAAGACCAGCTTTCAGATGTGCTGACGAAGCACCTTCCATG GGCAAGGTTCGAACCACTTAGGAATGCGGTCCAATCGTATAAAACCGAAA AGTGAAGCGGTACAATTTGTGCCGGTTCGAGCAGATGACCCCTGCTGGAA GATCACAAGGGACATGCACTGGGGCCCTTGGTTATAGATGCGACATGACA CGACATGTTCATCGCAACAGGACCTGCTGTCAGGAGACAGTGAGGTTGTA TATATTGTACATACATAAAACAAAACAAAAGAAAAATGGAGGGCCAGGAG GATCAACATCAACACCAACTGGAAGCTGCGGCGGACAACCAAGCTGAGGA AAACCAACCGGAGACCGGATCGGACGCGGGATCATCAATGTCTGGACTGA TTTCCAGCGATGGAACGCTAAGTGAACATGAAGCAGATGAGGACGAACTA CAGTTGCAGCCGTTGCTGACCGTAGCCAACTTCGAATACTTTGACTCTGA GTTAATGGGGTATCTTTGCGAAAGCGAGCAGGAAGCTGCGCAGCACTTCC TCGAATTCATGCAGCTTCGTACGAATGTAGATTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5378:507..2040+

>mRNA_L-elsbetiae_contig5378.13582.1 ID=mRNA_L-elsbetiae_contig5378.13582.1|Name=mRNA_L-elsbetiae_contig5378.13582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1548bp|location=Sequence derived from alignment at L-elsbetiae_contig5378:507..2040+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACGTGTATGGACATGGATCGACATACGCAATGTTATGTGTATACGT
CGACGACTGCACATTGGCTGGAAAGACACCAAGCGTTGTACAAGATCTAA
AGGAACAACTCTCAAGGAAATTCCGGATGACTGATGGTGGACCAGCTACT
CTACTACTGGGAATGGAGATATCCCAAACTGACGGTGAAATACCCGTGAG
CCAGCACAACTATGTGCTAAATCTACTCGACAAGTTCAACATGAAGGATT
GCACCACGGTTGCCACTCCGGGAACTGGAGCGGAGATCGAACGAGAACCA
GACAACGCAATCTACTTGAACGACATGGACACAAAATTCTACCAGGGAAT
TGTCGGGAGCTTGTTGTTTCTGACGAACACAACCCGGTGGGAAATAGGTT
ACTCTGTGATGATTTTGTGCCGCGGCATGAATAAGCCAACGAATCAACAC
CTTGCTGGGGCCAAAAGGGTTCTGAGATACTTGCGAGGAAAACCAGACAT
GCCAATCAAGTTCAGGAGAGGACAGTGGAAGCTACATGGCTACTGCGACG
CCAACTTTGCGGGAGCTTCTGAGGCACTACAGAAGAGATCAAGCAGCGGC
TACATTTTCATATTGACGGGAGTTATCAGTGCATCATCAACTCTACAAAA
AGTAACTGCCCAATCAACAGTTCATGCCGAGCTAATTGCTATGGCAACGG
CAGCGAGGGAGGCACTATGTTCATGCCGAGCTAATTGTTATGGCAACGGC
AGCGGGGGAGGCACTCTACCTTGAATGTACGTGTATGGACATGGATCGAC
ATACGCAATGTTATGTGTATACGTCGACGACTGCACATTGGCTGGAAAGA
CACCAAGCGTTGTACAAGATCTAAAGGAACAACTCTCAAGGAAATTCCGG
ATGACTGATGGTGGACCAGCTACTCTACTACTGGGAATGGAGATATCCCA
AACTGACGGTGAAATACCCGTGAGCCAGCACAACTATGTGCTAAATCTAC
TCGACAAGTTCAACATGAAGGATTGCACCACGGTTGCCACTCCGGGAACT
GGAGCGGAGATCGAACGAGAACCAGACAACGCAATCTACTTGAACGACAT
GGACACAAAATTCTACCAGGGAATTGTCGGGAGCTTGTTGTTTCTGACGA
ACACAACCCGGTGGGAAATAGGTTACTCTGTGATGATTTTGTGCCGCGGC
ATGAATAAGCCAACGAATCAACACCTTGCTGGGGCCAAAAGGGTTCTGAG
ATACTTGCGAGGAAAACCAGACATGCCAATCAAGTTCAGGAGAGGACAGT
GGAAGCTACATGGCTACTGCGACGCCAACTTTGCGGGAGCTTCTGAGGCA
CTACAGAAGAGATCAAGCAGCGGCTACATTTTCATATTGACGGGAGTTAT
CAGTGCATCATCAACTCTACAAAAAGTAACTGCCCAATCAACAGTTCATG
CCGAGCTAATTGCTATGGCAACGGCAGCGAGGGAGGCACTATGTTCATGC
CGAGCTAATTGTTATGGCAACGGCAGCGGGGGAGGCACTCTACCTTGA
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