mRNA_L-elsbetiae_contig5374.13573.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5374.13573.1
Unique NamemRNA_L-elsbetiae_contig5374.13573.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5374.13573.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 1.040e-61
Identity = 117/166 (70.48%), Postives = 124/166 (74.70%), Query Frame = 1 
Query:    1 MEMSSGEVERVAEGVESVVDLSGVSEAWEVWEMPLLIHPCYLLRRKGRTGGGS--------------GGWDDGSEGA----SEQFSVWCPAMRLDPCPPSVQRLLAPGR----GGEGGMAPSPVFSLDPGASCDPERVDLGLQPLLGTMVHASQAVCRPRVSNTPP 432
            MEMSSG V RVAEGVESVVDL+GVSEAWEVWEMPLL+HPCYLLRRKGR G                 G  DDG EG+    +E+FSVWCPAMRLDPCPPSVQRLL PGR    GG  GM PSPVFSLDPGASCDPERVDLGLQPLLGTMVHASQ      +S+ PP
Sbjct: 1013 MEMSSGMVRRVAEGVESVVDLTGVSEAWEVWEMPLLVHPCYLLRRKGRVGXXXXXXXXXXRRWEQRPGDGDDGDEGSEEEGTEEFSVWCPAMRLDPCPPSVQRLLTPGRATGSGGGHGMTPSPVFSLDPGASCDPERVDLGLQPLLGTMVHASQGGGPSSLSSLPP 1178
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BLAST of mRNA_L-elsbetiae_contig5374.13573.1 vs. uniprot
Match: A0A835YSR2_9STRA (RIC1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.190e-9
Identity = 46/119 (38.66%), Postives = 59/119 (49.58%), Query Frame = 1 
Query:  181 EGASEQFSVWCPAMRLDPCPPSVQRLLAPGRGGEGGM--APSPVFSLDPGASCDPERVDLGLQPLLGTMVHASQAVCRPR----------VSNTPP-----LPPCYEVRTHLRPILHMV 486
            E  SE++ VWCPA++L+         L  G   E  +        +LDP A  DPE + LGL    G MV     VCRPR          V+  PP     LPPCYE+RT LRP+LH++
Sbjct:  653 EAYSEEYQVWCPALQLE---------LPDGAFSEDSLDGGTDEALALDPHAYADPESMALGLLARKGAMV-----VCRPRDNAASAGSTAVNGPPPAEPLQLPPCYEMRTRLRPLLHLL 757
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5374.13573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB77_ECTSI1.040e-6170.48SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YSR2_9STRA5.190e-938.66RIC1 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5374contigL-elsbetiae_contig5374:9117..12255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.8
Seed ortholog evalue2.4e-54
Seed eggNOG ortholog2880.D8LB77
KEGG koko:K20476
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2006@1,KOG2006@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons4
Model size615
Cds size615
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5374.13573.1prot_L-elsbetiae_contig5374.13573.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5374 9117..12255 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816559.844328-CDS-L-elsbetiae_contig5374:9116..93351622816559.844328-CDS-L-elsbetiae_contig5374:9116..9335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5374 9117..9335 -
1691683647.4938617-CDS-L-elsbetiae_contig5374:9116..93351691683647.4938617-CDS-L-elsbetiae_contig5374:9116..9335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5374 9117..9335 -
1622816559.8557816-CDS-L-elsbetiae_contig5374:9841..100531622816559.8557816-CDS-L-elsbetiae_contig5374:9841..10053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5374 9842..10053 -
1691683647.5088983-CDS-L-elsbetiae_contig5374:9841..100531691683647.5088983-CDS-L-elsbetiae_contig5374:9841..10053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5374 9842..10053 -
1622816559.8663263-CDS-L-elsbetiae_contig5374:11021..111391622816559.8663263-CDS-L-elsbetiae_contig5374:11021..11139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5374 11022..11139 -
1691683647.5194154-CDS-L-elsbetiae_contig5374:11021..111391691683647.5194154-CDS-L-elsbetiae_contig5374:11021..11139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5374 11022..11139 -
1622816559.8759491-CDS-L-elsbetiae_contig5374:12189..122551622816559.8759491-CDS-L-elsbetiae_contig5374:12189..12255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5374 12190..12255 -
1691683647.5295784-CDS-L-elsbetiae_contig5374:12189..122551691683647.5295784-CDS-L-elsbetiae_contig5374:12189..12255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5374 12190..12255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5374.13573.1

>prot_L-elsbetiae_contig5374.13573.1 ID=prot_L-elsbetiae_contig5374.13573.1|Name=mRNA_L-elsbetiae_contig5374.13573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=205bp
MEMSSGEVERVAEGVESVVDLSGVSEAWEVWEMPLLIHPCYLLRRKGRTG
GGSGGWDDGSEGASEQFSVWCPAMRLDPCPPSVQRLLAPGRGGEGGMAPS
PVFSLDPGASCDPERVDLGLQPLLGTMVHASQAVCRPRVSNTPPLPPCYE
VRTHLRPILHMVLRHLLIASQLQLLDSPPPSPPPPPRWTLPLPLSASSPR
AKFPH
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mRNA from alignment at L-elsbetiae_contig5374:9117..12255-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5374.13573.1 ID=mRNA_L-elsbetiae_contig5374.13573.1|Name=mRNA_L-elsbetiae_contig5374.13573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3139bp|location=Sequence derived from alignment at L-elsbetiae_contig5374:9117..12255- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGATGAGCAGCGGCGAGGTTGAGAGGGTGGCGGAGGGCGTGGAATC
CGTGGTCGACCTGTCGGTAAGCTACTACCGTAGGTGACACAAGATACCAC
ACCCCCTGGACAGATTTTCAAACCTCGATTCCTCCCCAGCATGACGAGTG
CCAGAGCCGAAAGGGGGTGCGTTGGAAAGATCGGAGCGAGGGCTATCCGA
AGATGTGTCGTTTGGTGCTGGCACCTTCTTCGTTACGGAGTAATGGAGCT
CTAAAATTCGGCCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTAAGCG
CCCGGGGGGGTCCGGTTGTCCAGCCCATTTGGTCGCAGCAGCTGCGGGTC
AGCTGGACGATGCGAAGAAAGATAATCAGGGGGGCGATGAGGGGCAGCGA
TGTTGCTCCGCTGGACGATAACGAGAACACTGGTCGCCCCTTGTATATGT
ACAACTTCCACGCGATGATCGCTTTCTTAGTCTTCTGCCCAGGGACTTTC
CGACCCTTCTCGGTCTGTGCCTGCTGTGAACTGTTGCCGTCGCGGCGTTT
TCCAGCGCGGCTGGGGGCTCACTAAGCCTGTTATTTACCAAGTTTGCGTT
GGTTGCGTGTGTGTGTGTGTGACGTTCACCGCGAGCCAGTAGTCTACCGT
AGGTGACACAAGATACCACACACCCCGGACCAGATTTTAGAGCTGCATTA
CTCCGTAACGAAGAGGATGCCAGTGCCGGAAGGGGTGGCGTTGGAAAGAT
TTAGTCGAGGGCTGTTCGAAAATCTGTGGTTTGGTGCTGGCGCCATCTTC
GTTACGGAGTAATGGAGCTCTAAAATTCGGTCCAGGGGGTGTGGTATTTT
GTATCACCTACGGTACGCAGGATTTTCGTCTTCAGCTAACATGAGATAGA
GTATTGAAACCGTTAAAGGGGGGTCGGAGGTTGGGGTTAGGGTTATTTTC
CTAGATAAACTTAACTTCCGGCGTAGGGGGTCCCCGCGAGCGACCAGGCC
AGGCCTTGCGTGTATCGCTCGCTCGCTTGGTTTCTTGTTGTGTGACCCCG
CTCCTTGTTCGTTCCGACTTTTGCGCGCTTTGTCTTGCTGCGTTCGCCCG
TGCCCGTCCGCATCAGGGAGTGTCCGAGGCGTGGGAGGTGTGGGAGATGC
CGCTGCTCATCCACCCTTGCTACCTGCTGCGGAGGAAGGGCCGAACGGGC
GGCGGCAGCGGCGGGTGGGACGACGGCAGCGAAGGTGCGGTGGGACTCTT
TATAACATAGCCGGCAAGGGGGACTTTGCGTGTATGCAGAGGAGCGAACG
CACCTGTGCTCGCCGGAAGAAATCGGAAGAATAAAAAAAAGAGGAGCAAC
AATGGTAGTTGTTGGGGCCTGAGAAAGGGGCTCTGTAACATAGCCGAGAA
GGGGACTTTGCGTGCAGAGGAACGAACGCACCCGTGCCCGCTGGAAGTGA
TTGGGATGATAAACAAGAGAGGAGAAGTAATGCATGTAGGTTGTTGGGAC
CTAAGAAAAGGGGGATCTTGCACGTAGTCTGCTAGGTGTGCTGCTTCGAG
GCCTGCTGGGCACCAATCGGTCATGTTGATCAACCCACAGGTAGAACCCC
ATTATCGCAAATTCAAGCGGGTCATTTTGTTTTTCCTACCCCAAACTCCG
AGTGATCCCAGGCCGTGGTAACCTTCAAGTCATACCGCCAAACATTTGCG
TAGATGTATCCAGGGTAGCTTTCACGACACAGCGGTACATATCCCGTGAT
TTCAGGGAAGCTGGCCCCGCTACATACATATGTGTGACCCCGGTTGGGTC
GTCTAGCTATAATACCGTAGGTGACATACGATAAGACACCCCCTGGACCG
ATTTTCAAAGCTCAAGTACTCCACAGCAAGCAGATCGTCAGTCCCGAAAA
GGGCGGCGTTGGAAAGATCTCGTCGAGAGCTTTCCGAGAATGTGGCGTTT
GTGGTTAGAATCGTATTCGTTGCGGAGTAACCAAGCTTTCAATATCGGTC
CAGGGGGTGTCTTATCTTATATCACCTACGGTAGTCGTAGTGGAGGAAGG
GGGCCAGTGGGGCAGACGACGAATACATAAGCCAACAATAACGGAAAGAG
GAAACAAAAAAACGGTGTCCTCGGGGTCTCGAGGCACGTCAACATCCCTC
ACATCGCCTTTTTTTCACACTCACACGCACACGCACGCACACCTCCTCAC
AGGAGCTTCCGAGCAATTCTCGGTGTGGTGCCCGGCCATGCGCCTTGACC
CCTGCCCGCCGTCGGTGCAGCGGCTCCTCGCGCCTGGGAGGGGGGGAGAG
GGCGGAATGGCGCCGTCCCCCGTGTTCTCGCTCGACCCGGGAGCGAGCTG
CGACCCGGAGCGGGTGGACCTGGGGCTGCAGCCGCTGCTGGGAACGATGG
TGCATGCCTCGCAGGTGCGCGCCGGAGCCATGTTTGGTTTTGTGTGGCTG
AGCGTTTTTGGCGACGGCGCGGCGTCCCTCCCTAAATACTAAATACTGTC
GCATATTTCCCCCCCCCCTTTCTGTCCCGGGGGGGGCCCCCCCCCCCCCC
CCGCCCGTGCGCGTGTGGACGGACCACTGCTGTGCCTGTCGTTCACAAGG
GGAGAGCTAGGGCCGGCTGGCTTTGGCTCCTTCGGGAATGTCGTTGTCGT
GCAGGCAAAGGCTTTCTTTCTTTCCCCCTCCCCCCGAGATTTCATCGCCG
TTGGTGCGCTTTTGTCTCGGCCTCTTCGCTCGCTGTGTGTGTGTGTGTGT
GTGTTGCGCCGGGAAAAATACTACTCTCTTCGAACCGTCGCCTGCAAGCA
GTTACCGTTCGCTCTTTTCCCCCCTTGCCCTAACCTCCCACCACACCACC
GTTTGGCCCCTCGGGAAATCGCGCACCCGCGCGCACACACACACACACAC
ACACACACACACACACACAGGCGGTTTGTCGACCCAGGGTCTCCAACACT
CCCCCGCTGCCCCCGTGCTACGAGGTCCGCACCCACCTGCGGCCCATCCT
GCACATGGTCCTCCGACACCTGCTCATCGCCAGCCAGCTGCAGCTCCTGG
ACTCGCCGCCGCCGTCTCCGCCGCCGCCGCCGCGGTGGACCCTGCCGCTG
CCACTGTCGGCGTCGTCGCCGAGAGCGAAGTTCCCGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5374:9117..12255-

>mRNA_L-elsbetiae_contig5374.13573.1 ID=mRNA_L-elsbetiae_contig5374.13573.1|Name=mRNA_L-elsbetiae_contig5374.13573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1230bp|location=Sequence derived from alignment at L-elsbetiae_contig5374:9117..12255- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGATGAGCAGCGGCGAGGTTGAGAGGGTGGCGGAGGGCGTGGAATC
CGTGGTCGACCTGTCGATGGAGATGAGCAGCGGCGAGGTTGAGAGGGTGG
CGGAGGGCGTGGAATCCGTGGTCGACCTGTCGGGAGTGTCCGAGGCGTGG
GAGGTGTGGGAGATGCCGCTGCTCATCCACCCTTGCTACCTGCTGCGGAG
GAAGGGCCGAACGGGCGGCGGCAGCGGCGGGTGGGACGACGGCAGCGAAG
GGAGTGTCCGAGGCGTGGGAGGTGTGGGAGATGCCGCTGCTCATCCACCC
TTGCTACCTGCTGCGGAGGAAGGGCCGAACGGGCGGCGGCAGCGGCGGGT
GGGACGACGGCAGCGAAGGAGCTTCCGAGCAATTCTCGGTGTGGTGCCCG
GCCATGCGCCTTGACCCCTGCCCGCCGTCGGTGCAGCGGCTCCTCGCGCC
TGGGAGGGGGGGAGAGGGCGGAATGGCGCCGTCCCCCGTGTTCTCGCTCG
ACCCGGGAGCGAGCTGCGACCCGGAGCGGGTGGACCTGGGGCTGCAGCCG
CTGCTGGGAACGATGGTGCATGCCTCGCAGGAGCTTCCGAGCAATTCTCG
GTGTGGTGCCCGGCCATGCGCCTTGACCCCTGCCCGCCGTCGGTGCAGCG
GCTCCTCGCGCCTGGGAGGGGGGGAGAGGGCGGAATGGCGCCGTCCCCCG
TGTTCTCGCTCGACCCGGGAGCGAGCTGCGACCCGGAGCGGGTGGACCTG
GGGCTGCAGCCGCTGCTGGGAACGATGGTGCATGCCTCGCAGGCGGTTTG
TCGACCCAGGGTCTCCAACACTCCCCCGCTGCCCCCGTGCTACGAGGTCC
GCACCCACCTGCGGCCCATCCTGCACATGGTCCTCCGACACCTGCTCATC
GCCAGCCAGCTGCAGCTCCTGGACTCGCCGCCGCCGTCTCCGCCGCCGCC
GCCGCGGTGGACCCTGCCGCTGCCACTGTCGGCGTCGTCGCCGAGAGCGA
AGTTCCCGCACGCGGTTTGTCGACCCAGGGTCTCCAACACTCCCCCGCTG
CCCCCGTGCTACGAGGTCCGCACCCACCTGCGGCCCATCCTGCACATGGT
CCTCCGACACCTGCTCATCGCCAGCCAGCTGCAGCTCCTGGACTCGCCGC
CGCCGTCTCCGCCGCCGCCGCCGCGGTGGACCCTGCCGCTGCCACTGTCG
GCGTCGTCGCCGAGAGCGAAGTTCCCGCAC
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