Homology
BLAST of mRNA_L-elsbetiae_contig5374.13573.1 vs. uniprot
Match:
D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)
HSP 1 Score: 217 bits (553), Expect = 1.040e-61
Identity = 117/166 (70.48%), Postives = 124/166 (74.70%), Query Frame = 1
Query: 1 MEMSSGEVERVAEGVESVVDLSGVSEAWEVWEMPLLIHPCYLLRRKGRTGGGS--------------GGWDDGSEGA----SEQFSVWCPAMRLDPCPPSVQRLLAPGR----GGEGGMAPSPVFSLDPGASCDPERVDLGLQPLLGTMVHASQAVCRPRVSNTPP 432
MEMSSG V RVAEGVESVVDL+GVSEAWEVWEMPLL+HPCYLLRRKGR G G DDG EG+ +E+FSVWCPAMRLDPCPPSVQRLL PGR GG GM PSPVFSLDPGASCDPERVDLGLQPLLGTMVHASQ +S+ PP
Sbjct: 1013 MEMSSGMVRRVAEGVESVVDLTGVSEAWEVWEMPLLVHPCYLLRRKGRVGXXXXXXXXXXRRWEQRPGDGDDGDEGSEEEGTEEFSVWCPAMRLDPCPPSVQRLLTPGRATGSGGGHGMTPSPVFSLDPGASCDPERVDLGLQPLLGTMVHASQGGGPSSLSSLPP 1178
BLAST of mRNA_L-elsbetiae_contig5374.13573.1 vs. uniprot
Match:
A0A835YSR2_9STRA (RIC1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR2_9STRA)
HSP 1 Score: 65.9 bits (159), Expect = 5.190e-9
Identity = 46/119 (38.66%), Postives = 59/119 (49.58%), Query Frame = 1
Query: 181 EGASEQFSVWCPAMRLDPCPPSVQRLLAPGRGGEGGM--APSPVFSLDPGASCDPERVDLGLQPLLGTMVHASQAVCRPR----------VSNTPP-----LPPCYEVRTHLRPILHMV 486
E SE++ VWCPA++L+ L G E + +LDP A DPE + LGL G MV VCRPR V+ PP LPPCYE+RT LRP+LH++
Sbjct: 653 EAYSEEYQVWCPALQLE---------LPDGAFSEDSLDGGTDEALALDPHAYADPESMALGLLARKGAMV-----VCRPRDNAASAGSTAVNGPPPAEPLQLPPCYEMRTRLRPLLHLL 757
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5374.13573.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.04e-61 / Id = 70.48 Expect = 5.19e-9 / Id = 38.66 Sequence D8LB77_ECTSI A0A835YSR2_9STRA
Match Name E-value Identity Description
D8LB77_ECTSI 1.040e-61 70.48 SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YSR2_9STRA 5.190e-9 38.66 RIC1 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 218.8
Seed ortholog evalue 2.4e-54
Seed eggNOG ortholog 2880.D8LB77
KEGG ko ko:K20476
Hectar predicted targeting category other localisation
EggNOG free text desc. Rab guanyl-nucleotide exchange factor activity
EggNOG OGs KOG2006@1,KOG2006@2759
COG Functional cat. S
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
BRITE ko00000,ko04131
Exons 4
Model size 615
Cds size 615
Stop 0
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816559.844328-CDS-L-elsbetiae_contig5374:9116..9335 1622816559.844328-CDS-L-elsbetiae_contig5374:9116..9335 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5374 9117..9335 -
1691683647.4938617-CDS-L-elsbetiae_contig5374:9116..9335 1691683647.4938617-CDS-L-elsbetiae_contig5374:9116..9335 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5374 9117..9335 -
1622816559.8557816-CDS-L-elsbetiae_contig5374:9841..10053 1622816559.8557816-CDS-L-elsbetiae_contig5374:9841..10053 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5374 9842..10053 -
1691683647.5088983-CDS-L-elsbetiae_contig5374:9841..10053 1691683647.5088983-CDS-L-elsbetiae_contig5374:9841..10053 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5374 9842..10053 -
1622816559.8663263-CDS-L-elsbetiae_contig5374:11021..11139 1622816559.8663263-CDS-L-elsbetiae_contig5374:11021..11139 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5374 11022..11139 -
1691683647.5194154-CDS-L-elsbetiae_contig5374:11021..11139 1691683647.5194154-CDS-L-elsbetiae_contig5374:11021..11139 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5374 11022..11139 -
1622816559.8759491-CDS-L-elsbetiae_contig5374:12189..12255 1622816559.8759491-CDS-L-elsbetiae_contig5374:12189..12255 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5374 12190..12255 -
1691683647.5295784-CDS-L-elsbetiae_contig5374:12189..12255 1691683647.5295784-CDS-L-elsbetiae_contig5374:12189..12255 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5374 12190..12255 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5374.13573.1
>prot_L-elsbetiae_contig5374.13573.1 ID=prot_L-elsbetiae_contig5374.13573.1|Name=mRNA_L-elsbetiae_contig5374.13573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=205bp
MEMSSGEVERVAEGVESVVDLSGVSEAWEVWEMPLLIHPCYLLRRKGRTG GGSGGWDDGSEGASEQFSVWCPAMRLDPCPPSVQRLLAPGRGGEGGMAPS PVFSLDPGASCDPERVDLGLQPLLGTMVHASQAVCRPRVSNTPPLPPCYE VRTHLRPILHMVLRHLLIASQLQLLDSPPPSPPPPPRWTLPLPLSASSPR AKFPH back to top mRNA from alignment at L-elsbetiae_contig5374:9117..12255-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5374.13573.1 ID=mRNA_L-elsbetiae_contig5374.13573.1|Name=mRNA_L-elsbetiae_contig5374.13573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3139bp|location=Sequence derived from alignment at L-elsbetiae_contig5374:9117..12255- (Laminarionema elsbetiae ELsaHSoW15)ATGGAGATGAGCAGCGGCGAGGTTGAGAGGGTGGCGGAGGGCGTGGAATC
CGTGGTCGACCTGTCG GTAAGCTACTACCGTAGGTGACACAAGATACCAC
ACCCCCTGGACAGATTTTCAAACCTCGATTCCTCCCCAGCATGACGAGTG
CCAGAGCCGAAAGGGGGTGCGTTGGAAAGATCGGAGCGAGGGCTATCCGA
AGATGTGTCGTTTGGTGCTGGCACCTTCTTCGTTACGGAGTAATGGAGCT
CTAAAATTCGGCCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTAAGCG
CCCGGGGGGGTCCGGTTGTCCAGCCCATTTGGTCGCAGCAGCTGCGGGTC
AGCTGGACGATGCGAAGAAAGATAATCAGGGGGGCGATGAGGGGCAGCGA
TGTTGCTCCGCTGGACGATAACGAGAACACTGGTCGCCCCTTGTATATGT
ACAACTTCCACGCGATGATCGCTTTCTTAGTCTTCTGCCCAGGGACTTTC
CGACCCTTCTCGGTCTGTGCCTGCTGTGAACTGTTGCCGTCGCGGCGTTT
TCCAGCGCGGCTGGGGGCTCACTAAGCCTGTTATTTACCAAGTTTGCGTT
GGTTGCGTGTGTGTGTGTGTGACGTTCACCGCGAGCCAGTAGTCTACCGT
AGGTGACACAAGATACCACACACCCCGGACCAGATTTTAGAGCTGCATTA
CTCCGTAACGAAGAGGATGCCAGTGCCGGAAGGGGTGGCGTTGGAAAGAT
TTAGTCGAGGGCTGTTCGAAAATCTGTGGTTTGGTGCTGGCGCCATCTTC
GTTACGGAGTAATGGAGCTCTAAAATTCGGTCCAGGGGGTGTGGTATTTT
GTATCACCTACGGTACGCAGGATTTTCGTCTTCAGCTAACATGAGATAGA
GTATTGAAACCGTTAAAGGGGGGTCGGAGGTTGGGGTTAGGGTTATTTTC
CTAGATAAACTTAACTTCCGGCGTAGGGGGTCCCCGCGAGCGACCAGGCC
AGGCCTTGCGTGTATCGCTCGCTCGCTTGGTTTCTTGTTGTGTGACCCCG
CTCCTTGTTCGTTCCGACTTTTGCGCGCTTTGTCTTGCTGCGTTCGCCCG
TGCCCGTCCGCATCAGGGAGTGTCCGAGGCGTGGGAGGTGTGGGAGATGC
CGCTGCTCATCCACCCTTGCTACCTGCTGCGGAGGAAGGGCCGAACGGGC
GGCGGCAGCGGCGGGTGGGACGACGGCAGCGAAG GTGCGGTGGGACTCTT
TATAACATAGCCGGCAAGGGGGACTTTGCGTGTATGCAGAGGAGCGAACG
CACCTGTGCTCGCCGGAAGAAATCGGAAGAATAAAAAAAAGAGGAGCAAC
AATGGTAGTTGTTGGGGCCTGAGAAAGGGGCTCTGTAACATAGCCGAGAA
GGGGACTTTGCGTGCAGAGGAACGAACGCACCCGTGCCCGCTGGAAGTGA
TTGGGATGATAAACAAGAGAGGAGAAGTAATGCATGTAGGTTGTTGGGAC
CTAAGAAAAGGGGGATCTTGCACGTAGTCTGCTAGGTGTGCTGCTTCGAG
GCCTGCTGGGCACCAATCGGTCATGTTGATCAACCCACAGGTAGAACCCC
ATTATCGCAAATTCAAGCGGGTCATTTTGTTTTTCCTACCCCAAACTCCG
AGTGATCCCAGGCCGTGGTAACCTTCAAGTCATACCGCCAAACATTTGCG
TAGATGTATCCAGGGTAGCTTTCACGACACAGCGGTACATATCCCGTGAT
TTCAGGGAAGCTGGCCCCGCTACATACATATGTGTGACCCCGGTTGGGTC
GTCTAGCTATAATACCGTAGGTGACATACGATAAGACACCCCCTGGACCG
ATTTTCAAAGCTCAAGTACTCCACAGCAAGCAGATCGTCAGTCCCGAAAA
GGGCGGCGTTGGAAAGATCTCGTCGAGAGCTTTCCGAGAATGTGGCGTTT
GTGGTTAGAATCGTATTCGTTGCGGAGTAACCAAGCTTTCAATATCGGTC
CAGGGGGTGTCTTATCTTATATCACCTACGGTAGTCGTAGTGGAGGAAGG
GGGCCAGTGGGGCAGACGACGAATACATAAGCCAACAATAACGGAAAGAG
GAAACAAAAAAACGGTGTCCTCGGGGTCTCGAGGCACGTCAACATCCCTC
ACATCGCCTTTTTTTCACACTCACACGCACACGCACGCACACCTCCTCAC
AGGAGCTTCCGAGCAATTCTCGGTGTGGTGCCCGGCCATGCGCCTTGACC
CCTGCCCGCCGTCGGTGCAGCGGCTCCTCGCGCCTGGGAGGGGGGGAGAG
GGCGGAATGGCGCCGTCCCCCGTGTTCTCGCTCGACCCGGGAGCGAGCTG
CGACCCGGAGCGGGTGGACCTGGGGCTGCAGCCGCTGCTGGGAACGATGG
TGCATGCCTCGCAG GTGCGCGCCGGAGCCATGTTTGGTTTTGTGTGGCTG
AGCGTTTTTGGCGACGGCGCGGCGTCCCTCCCTAAATACTAAATACTGTC
GCATATTTCCCCCCCCCCTTTCTGTCCCGGGGGGGGCCCCCCCCCCCCCC
CCGCCCGTGCGCGTGTGGACGGACCACTGCTGTGCCTGTCGTTCACAAGG
GGAGAGCTAGGGCCGGCTGGCTTTGGCTCCTTCGGGAATGTCGTTGTCGT
GCAGGCAAAGGCTTTCTTTCTTTCCCCCTCCCCCCGAGATTTCATCGCCG
TTGGTGCGCTTTTGTCTCGGCCTCTTCGCTCGCTGTGTGTGTGTGTGTGT
GTGTTGCGCCGGGAAAAATACTACTCTCTTCGAACCGTCGCCTGCAAGCA
GTTACCGTTCGCTCTTTTCCCCCCTTGCCCTAACCTCCCACCACACCACC
GTTTGGCCCCTCGGGAAATCGCGCACCCGCGCGCACACACACACACACAC
ACACACACACACACACACAGGCGGTTTGTCGACCCAGGGTCTCCAACACT
CCCCCGCTGCCCCCGTGCTACGAGGTCCGCACCCACCTGCGGCCCATCCT
GCACATGGTCCTCCGACACCTGCTCATCGCCAGCCAGCTGCAGCTCCTGG
ACTCGCCGCCGCCGTCTCCGCCGCCGCCGCCGCGGTGGACCCTGCCGCTG
CCACTGTCGGCGTCGTCGCCGAGAGCGAAGTTCCCGCAC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5374:9117..12255-
>mRNA_L-elsbetiae_contig5374.13573.1 ID=mRNA_L-elsbetiae_contig5374.13573.1|Name=mRNA_L-elsbetiae_contig5374.13573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1230bp|location=Sequence derived from alignment at L-elsbetiae_contig5374:9117..12255- (Laminarionema elsbetiae ELsaHSoW15) ATGGAGATGAGCAGCGGCGAGGTTGAGAGGGTGGCGGAGGGCGTGGAATC CGTGGTCGACCTGTCGATGGAGATGAGCAGCGGCGAGGTTGAGAGGGTGG CGGAGGGCGTGGAATCCGTGGTCGACCTGTCGGGAGTGTCCGAGGCGTGG GAGGTGTGGGAGATGCCGCTGCTCATCCACCCTTGCTACCTGCTGCGGAG GAAGGGCCGAACGGGCGGCGGCAGCGGCGGGTGGGACGACGGCAGCGAAG GGAGTGTCCGAGGCGTGGGAGGTGTGGGAGATGCCGCTGCTCATCCACCC TTGCTACCTGCTGCGGAGGAAGGGCCGAACGGGCGGCGGCAGCGGCGGGT GGGACGACGGCAGCGAAGGAGCTTCCGAGCAATTCTCGGTGTGGTGCCCG GCCATGCGCCTTGACCCCTGCCCGCCGTCGGTGCAGCGGCTCCTCGCGCC TGGGAGGGGGGGAGAGGGCGGAATGGCGCCGTCCCCCGTGTTCTCGCTCG ACCCGGGAGCGAGCTGCGACCCGGAGCGGGTGGACCTGGGGCTGCAGCCG CTGCTGGGAACGATGGTGCATGCCTCGCAGGAGCTTCCGAGCAATTCTCG GTGTGGTGCCCGGCCATGCGCCTTGACCCCTGCCCGCCGTCGGTGCAGCG GCTCCTCGCGCCTGGGAGGGGGGGAGAGGGCGGAATGGCGCCGTCCCCCG TGTTCTCGCTCGACCCGGGAGCGAGCTGCGACCCGGAGCGGGTGGACCTG GGGCTGCAGCCGCTGCTGGGAACGATGGTGCATGCCTCGCAGGCGGTTTG TCGACCCAGGGTCTCCAACACTCCCCCGCTGCCCCCGTGCTACGAGGTCC GCACCCACCTGCGGCCCATCCTGCACATGGTCCTCCGACACCTGCTCATC GCCAGCCAGCTGCAGCTCCTGGACTCGCCGCCGCCGTCTCCGCCGCCGCC GCCGCGGTGGACCCTGCCGCTGCCACTGTCGGCGTCGTCGCCGAGAGCGA AGTTCCCGCACGCGGTTTGTCGACCCAGGGTCTCCAACACTCCCCCGCTG CCCCCGTGCTACGAGGTCCGCACCCACCTGCGGCCCATCCTGCACATGGT CCTCCGACACCTGCTCATCGCCAGCCAGCTGCAGCTCCTGGACTCGCCGC CGCCGTCTCCGCCGCCGCCGCCGCGGTGGACCCTGCCGCTGCCACTGTCG GCGTCGTCGCCGAGAGCGAAGTTCCCGCAC back to top