mRNA_L-elsbetiae_contig5368.13565.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5368.13565.1 vs. uniprot
Match: D7FJ94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ94_ECTSI) HSP 1 Score: 735 bits (1897), Expect = 1.690e-249 Identity = 449/939 (47.82%), Postives = 521/939 (55.48%), Query Frame = 1 Query: 1 TSFQFLDGNGLLSCESVSYRWRCAADRTSLWKRACVAAFPHLGD---TPSPYLSCSAYEGDWRETFLDGNRGNRSTVLDWKMEAVTG--VDEGDGVD--DPDESQRRFFPPFSLCGYSFSLLADPRGNPRATNQVPA-GAPRVEKGLSVYLTVLFQEDPPDAPPWG--GSVAAASSHGFPPPPLPLGPGHPWGAAEEGEEXXXXXQDRARLGVLDVEQGGGLALRATGDGVSDENGKGDAKEATAAWVKRDPHGLRRRRRRARTREGKAPVVSHLGDSAAIARECCAGFSLTAVNKDSDKDVMWISSMKRDRFFPGRSSWGVHCLVPMSTFQDPEEGFLQGGAATVRLRVRLLFLTAHVYTTADLASHRGFGVVPVRGNDQPFHFHG----KPEGGQENSRSMPWNPATNSVSPERTEESXXXXXXXXSTPV--AGPLPCLTFEVLRCTTLEEMVSLVARALGLDSSEIRLWVITQHLTDAPLAPRQLLSEKDLPARFFDDGQASPSLFRLLSGDAVDETCRVRLWVQQRSDGGFWEAEAS-GPPHPSSFWXXXXXXXXXXXXXXXXXXXXXAGVLAEPMAGADGDACEGXXXXXXXXXXGRWSESSTSSPSGPMMPPRVRFGGVRLSRVSDLPSRQMQQLSMFASGGGGVVEPASAAPAGDENLGGDSASGTGAVDTAGVPTVVAEESLMLVFLKTLGLGSAGEQESTAAAA--------GAGEEAAATGGLPTYLTHAVMRGSSPLRSLFELTAELLQDGTAPEDLEAHIEDLPWAWQ----------------------VAALRGADGSAADRVPDGAPSSSGATQNRKKTVACRRFLACPPTVLAAGVGATGQQEQGGSPARLTLEQAGLSSGASICFFRAGGEVLARKTYGGVVKGLVEDMRLLLTRKGPLGRVHLVKVTAYLFGCSSVDGFAG 2676 T F+FLDGNGLLSCE+VSY WR A DR LW+RAC++AFPHL D + SPY CSAYEGD+RETFLDGNRGNRSTVLDW MEAVTG D DG++ DP++S+RR+FPPFSLCGY F LLADP GNPRA +Q A GAP VEKGLSVYLTV F +D P PPWG G AS GFPPPP L G PWGA E G A K DPHGLRRRRRRARTREG+A +VSH GD AAIARECC FSL AV DK V+W+SSM+ DRF+ GR SWGVHCL+PM QDPE+GF++ G TVRLR RLLFL HVYTTADLASHRGFGVVPVRG D+ FHF+G + E QE SR+ P + + + S STP GPLPC+TFEVLRCTTLEE+ L+AR LG++ IRLWVI+Q TD PLAPRQLLS K LPARF DDGQ SPSLFRLLSGDAVDETCRVRLWV+QR DGGFWE E S W G EP + DG G G W SS S+ P + GVRLSR +D+ Q + S P + +PA + + EE + LVF+KTLGLG+ +ES +AA G G AA+ P YLTHA +R SSPLRSLFEL A AP+DLEA++EDLPW WQ AA+RG +TLE+AGLSSG SICFFRAG R+TY V+GLVE+M +LL +GPLGRVHL+K+ + C S+ G+ G Sbjct: 38 TVFEFLDGNGLLSCEAVSYCWRRATDRAHLWQRACMSAFPHLRDYYFSRSPYTCCSAYEGDYRETFLDGNRGNRSTVLDWNMEAVTGGAADGADGMEGGDPEQSERRYFPPFSLCGYLFMLLADPTGNPRAASQAEAAGAPPVEKGLSVYLTVAFHDDAPGTPPWGVGGVAGGASFEGFPPPPQHLLVGQPWGAEEAG--------------------------------------------GARAEAKSDPHGLRRRRRRARTREGRAAIVSHAGDPAAIARECCTAFSLAAVKTAGDKGVVWVSSMEGDRFWLGRRSWGVHCLIPMGKVQDPEQGFVKDGRLTVRLRARLLFLFLHVYTTADLASHRGFGVVPVRGRDRRFHFYGNDGTEQEEEQETSRNHPRDTPPAAATGSDGRSSPGGKKRNTSTPAKGGGPLPCITFEVLRCTTLEEVEGLIARTLGVEREGIRLWVISQPFTDGPLAPRQLLSGKGLPARFLDDGQNSPSLFRLLSGDAVDETCRVRLWVEQRGDGGFWETEGGRDATRLSRVWLRRRQQQRQKEK---------TGAPLEPSS--DGSRWSGDGGSGAGDTDGSWVSSSPST----QPDPEDNYAGVRLSRTADVYPFHQQSTLAWESASDESAPPTAGSPASEXXXXXXXXXXXXXXXXXXGQRIPPEERI-LVFVKTLGLGN---EESQSAAGTWRGGDSNGCGGGVAASPPTPKYLTHAALRASSPLRSLFELAAAEHDTALAPQDLEAYVEDLPWVWQSAVVATDPEIYNAETAEPSGGSTAAVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVGVTLERAGLSSGTSICFFRAGDRPAVRRTYNAAVEGLVEEMNMLLRGEGPLGRVHLIKMAEVVEICESL-GYQG 912 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5368.13565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5368.13565.1 >prot_L-elsbetiae_contig5368.13565.1 ID=prot_L-elsbetiae_contig5368.13565.1|Name=mRNA_L-elsbetiae_contig5368.13565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=892bp TSFQFLDGNGLLSCESVSYRWRCAADRTSLWKRACVAAFPHLGDTPSPYLback to top mRNA from alignment at L-elsbetiae_contig5368:5454..11206+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5368.13565.1 ID=mRNA_L-elsbetiae_contig5368.13565.1|Name=mRNA_L-elsbetiae_contig5368.13565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5753bp|location=Sequence derived from alignment at L-elsbetiae_contig5368:5454..11206+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5368:5454..11206+ >mRNA_L-elsbetiae_contig5368.13565.1 ID=mRNA_L-elsbetiae_contig5368.13565.1|Name=mRNA_L-elsbetiae_contig5368.13565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5352bp|location=Sequence derived from alignment at L-elsbetiae_contig5368:5454..11206+ (Laminarionema elsbetiae ELsaHSoW15)back to top |