mRNA_L-elsbetiae_contig5368.13565.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5368.13565.1
Unique NamemRNA_L-elsbetiae_contig5368.13565.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5368.13565.1 vs. uniprot
Match: D7FJ94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ94_ECTSI)

HSP 1 Score: 735 bits (1897), Expect = 1.690e-249
Identity = 449/939 (47.82%), Postives = 521/939 (55.48%), Query Frame = 1
Query:    1 TSFQFLDGNGLLSCESVSYRWRCAADRTSLWKRACVAAFPHLGD---TPSPYLSCSAYEGDWRETFLDGNRGNRSTVLDWKMEAVTG--VDEGDGVD--DPDESQRRFFPPFSLCGYSFSLLADPRGNPRATNQVPA-GAPRVEKGLSVYLTVLFQEDPPDAPPWG--GSVAAASSHGFPPPPLPLGPGHPWGAAEEGEEXXXXXQDRARLGVLDVEQGGGLALRATGDGVSDENGKGDAKEATAAWVKRDPHGLRRRRRRARTREGKAPVVSHLGDSAAIARECCAGFSLTAVNKDSDKDVMWISSMKRDRFFPGRSSWGVHCLVPMSTFQDPEEGFLQGGAATVRLRVRLLFLTAHVYTTADLASHRGFGVVPVRGNDQPFHFHG----KPEGGQENSRSMPWNPATNSVSPERTEESXXXXXXXXSTPV--AGPLPCLTFEVLRCTTLEEMVSLVARALGLDSSEIRLWVITQHLTDAPLAPRQLLSEKDLPARFFDDGQASPSLFRLLSGDAVDETCRVRLWVQQRSDGGFWEAEAS-GPPHPSSFWXXXXXXXXXXXXXXXXXXXXXAGVLAEPMAGADGDACEGXXXXXXXXXXGRWSESSTSSPSGPMMPPRVRFGGVRLSRVSDLPSRQMQQLSMFASGGGGVVEPASAAPAGDENLGGDSASGTGAVDTAGVPTVVAEESLMLVFLKTLGLGSAGEQESTAAAA--------GAGEEAAATGGLPTYLTHAVMRGSSPLRSLFELTAELLQDGTAPEDLEAHIEDLPWAWQ----------------------VAALRGADGSAADRVPDGAPSSSGATQNRKKTVACRRFLACPPTVLAAGVGATGQQEQGGSPARLTLEQAGLSSGASICFFRAGGEVLARKTYGGVVKGLVEDMRLLLTRKGPLGRVHLVKVTAYLFGCSSVDGFAG 2676
            T F+FLDGNGLLSCE+VSY WR A DR  LW+RAC++AFPHL D   + SPY  CSAYEGD+RETFLDGNRGNRSTVLDW MEAVTG   D  DG++  DP++S+RR+FPPFSLCGY F LLADP GNPRA +Q  A GAP VEKGLSVYLTV F +D P  PPWG  G    AS  GFPPPP  L  G PWGA E G                                               A  K DPHGLRRRRRRARTREG+A +VSH GD AAIARECC  FSL AV    DK V+W+SSM+ DRF+ GR SWGVHCL+PM   QDPE+GF++ G  TVRLR RLLFL  HVYTTADLASHRGFGVVPVRG D+ FHF+G    + E  QE SR+ P +    + +      S        STP    GPLPC+TFEVLRCTTLEE+  L+AR LG++   IRLWVI+Q  TD PLAPRQLLS K LPARF DDGQ SPSLFRLLSGDAVDETCRVRLWV+QR DGGFWE E        S  W                      G   EP +  DG    G          G W  SS S+       P   + GVRLSR +D+     Q    + S       P + +PA +                     +  EE + LVF+KTLGLG+   +ES +AA         G G   AA+   P YLTHA +R SSPLRSLFEL A       AP+DLEA++EDLPW WQ                       AA+RG                                                          +TLE+AGLSSG SICFFRAG     R+TY   V+GLVE+M +LL  +GPLGRVHL+K+   +  C S+ G+ G
Sbjct:   38 TVFEFLDGNGLLSCEAVSYCWRRATDRAHLWQRACMSAFPHLRDYYFSRSPYTCCSAYEGDYRETFLDGNRGNRSTVLDWNMEAVTGGAADGADGMEGGDPEQSERRYFPPFSLCGYLFMLLADPTGNPRAASQAEAAGAPPVEKGLSVYLTVAFHDDAPGTPPWGVGGVAGGASFEGFPPPPQHLLVGQPWGAEEAG--------------------------------------------GARAEAKSDPHGLRRRRRRARTREGRAAIVSHAGDPAAIARECCTAFSLAAVKTAGDKGVVWVSSMEGDRFWLGRRSWGVHCLIPMGKVQDPEQGFVKDGRLTVRLRARLLFLFLHVYTTADLASHRGFGVVPVRGRDRRFHFYGNDGTEQEEEQETSRNHPRDTPPAAATGSDGRSSPGGKKRNTSTPAKGGGPLPCITFEVLRCTTLEEVEGLIARTLGVEREGIRLWVISQPFTDGPLAPRQLLSGKGLPARFLDDGQNSPSLFRLLSGDAVDETCRVRLWVEQRGDGGFWETEGGRDATRLSRVWLRRRQQQRQKEK---------TGAPLEPSS--DGSRWSGDGGSGAGDTDGSWVSSSPST----QPDPEDNYAGVRLSRTADVYPFHQQSTLAWESASDESAPPTAGSPASEXXXXXXXXXXXXXXXXXXGQRIPPEERI-LVFVKTLGLGN---EESQSAAGTWRGGDSNGCGGGVAASPPTPKYLTHAALRASSPLRSLFELAAAEHDTALAPQDLEAYVEDLPWVWQSAVVATDPEIYNAETAEPSGGSTAAVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVGVTLERAGLSSGTSICFFRAGDRPAVRRTYNAAVEGLVEEMNMLLRGEGPLGRVHLIKMAEVVEICESL-GYQG 912          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5368.13565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ94_ECTSI1.690e-24947.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5368contigL-elsbetiae_contig5368:5454..11206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score738.4
Seed ortholog evalue3.9e-210
Seed eggNOG ortholog2880.D7FJ94
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zinc-binding domain, present in Dystrophin, CREB-binding protein.
EggNOG OGs28J50@1,2QRH6@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size2676
Cds size2676
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5368.13565.1prot_L-elsbetiae_contig5368.13565.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5368 5454..11206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.9101388-CDS-L-elsbetiae_contig5368:5453..55491622816558.9101388-CDS-L-elsbetiae_contig5368:5453..5549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5368 5454..5549 +
1691683646.788516-CDS-L-elsbetiae_contig5368:5453..55491691683646.788516-CDS-L-elsbetiae_contig5368:5453..5549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5368 5454..5549 +
1622816558.9242573-CDS-L-elsbetiae_contig5368:6066..62581622816558.9242573-CDS-L-elsbetiae_contig5368:6066..6258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5368 6067..6258 +
1691683646.801582-CDS-L-elsbetiae_contig5368:6066..62581691683646.801582-CDS-L-elsbetiae_contig5368:6066..6258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5368 6067..6258 +
1622816558.9361856-CDS-L-elsbetiae_contig5368:6750..74281622816558.9361856-CDS-L-elsbetiae_contig5368:6750..7428Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5368 6751..7428 +
1691683646.8102844-CDS-L-elsbetiae_contig5368:6750..74281691683646.8102844-CDS-L-elsbetiae_contig5368:6750..7428Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5368 6751..7428 +
1622816558.94593-CDS-L-elsbetiae_contig5368:8388..85721622816558.94593-CDS-L-elsbetiae_contig5368:8388..8572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5368 8389..8572 +
1691683646.8197381-CDS-L-elsbetiae_contig5368:8388..85721691683646.8197381-CDS-L-elsbetiae_contig5368:8388..8572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5368 8389..8572 +
1622816558.956935-CDS-L-elsbetiae_contig5368:9120..93911622816558.956935-CDS-L-elsbetiae_contig5368:9120..9391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5368 9121..9391 +
1691683646.8297484-CDS-L-elsbetiae_contig5368:9120..93911691683646.8297484-CDS-L-elsbetiae_contig5368:9120..9391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5368 9121..9391 +
1622816558.9669597-CDS-L-elsbetiae_contig5368:9816..102801622816558.9669597-CDS-L-elsbetiae_contig5368:9816..10280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5368 9817..10280 +
1691683646.840126-CDS-L-elsbetiae_contig5368:9816..102801691683646.840126-CDS-L-elsbetiae_contig5368:9816..10280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5368 9817..10280 +
1622816558.976655-CDS-L-elsbetiae_contig5368:10337..105671622816558.976655-CDS-L-elsbetiae_contig5368:10337..10567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5368 10338..10567 +
1691683646.8502865-CDS-L-elsbetiae_contig5368:10337..105671691683646.8502865-CDS-L-elsbetiae_contig5368:10337..10567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5368 10338..10567 +
1622816558.9926338-CDS-L-elsbetiae_contig5368:10645..112061622816558.9926338-CDS-L-elsbetiae_contig5368:10645..11206Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5368 10646..11206 +
1691683646.8603132-CDS-L-elsbetiae_contig5368:10645..112061691683646.8603132-CDS-L-elsbetiae_contig5368:10645..11206Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5368 10646..11206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5368.13565.1

>prot_L-elsbetiae_contig5368.13565.1 ID=prot_L-elsbetiae_contig5368.13565.1|Name=mRNA_L-elsbetiae_contig5368.13565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=892bp
TSFQFLDGNGLLSCESVSYRWRCAADRTSLWKRACVAAFPHLGDTPSPYL
SCSAYEGDWRETFLDGNRGNRSTVLDWKMEAVTGVDEGDGVDDPDESQRR
FFPPFSLCGYSFSLLADPRGNPRATNQVPAGAPRVEKGLSVYLTVLFQED
PPDAPPWGGSVAAASSHGFPPPPLPLGPGHPWGAAEEGEEEDEEDQDRAR
LGVLDVEQGGGLALRATGDGVSDENGKGDAKEATAAWVKRDPHGLRRRRR
RARTREGKAPVVSHLGDSAAIARECCAGFSLTAVNKDSDKDVMWISSMKR
DRFFPGRSSWGVHCLVPMSTFQDPEEGFLQGGAATVRLRVRLLFLTAHVY
TTADLASHRGFGVVPVRGNDQPFHFHGKPEGGQENSRSMPWNPATNSVSP
ERTEESSSSSSSNSSTPVAGPLPCLTFEVLRCTTLEEMVSLVARALGLDS
SEIRLWVITQHLTDAPLAPRQLLSEKDLPARFFDDGQASPSLFRLLSGDA
VDETCRVRLWVQQRSDGGFWEAEASGPPHPSSFWQQQQQQQQQQQQQQEQ
QVEEEAGVLAEPMAGADGDACEGGGGGGGGASSGRWSESSTSSPSGPMMP
PRVRFGGVRLSRVSDLPSRQMQQLSMFASGGGGVVEPASAAPAGDENLGG
DSASGTGAVDTAGVPTVVAEESLMLVFLKTLGLGSAGEQESTAAAAGAGE
EAAATGGLPTYLTHAVMRGSSPLRSLFELTAELLQDGTAPEDLEAHIEDL
PWAWQVAALRGADGSAADRVPDGAPSSSGATQNRKKTVACRRFLACPPTV
LAAGVGATGQQEQGGSPARLTLEQAGLSSGASICFFRAGGEVLARKTYGG
VVKGLVEDMRLLLTRKGPLGRVHLVKVTAYLFGCSSVDGFAG
back to top

mRNA from alignment at L-elsbetiae_contig5368:5454..11206+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5368.13565.1 ID=mRNA_L-elsbetiae_contig5368.13565.1|Name=mRNA_L-elsbetiae_contig5368.13565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5753bp|location=Sequence derived from alignment at L-elsbetiae_contig5368:5454..11206+ (Laminarionema elsbetiae ELsaHSoW15)
ACCTCGTTCCAGTTCTTGGACGGGAACGGGCTGCTGTCGTGCGAGTCCGT GTCGTACCGTTGGCGGTGCGCGGCCGATAGAACCAGCCTGTGGAAGGTGA GAAGTGAAGACACGGGGGGATTCTGCGGCACGTCGGTAGCCTGTTATGCT GCTGCTGCTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGTTGT TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTGTTGTTGGTGTTGTTG ATATGGTTGTTAATTGTTTTGGTGGTGGTGTTGTTGATGTTGGTGCTGTT GTTTGTGTTGTTGTCGGTGATGGTGATGTGGGAGAGCCGGGAATCGTCCG CACGCGCCGCTGGGGTCATCACAATATGTTTGTTTTTCTTTGGAGGGAGG CGGGTACTCGCGATTTTTTCCTGTGACCCGTCCGCACGCGAGACACCATG CCCTCACACGCACATACATACACACGACATAGTTCGCACACAAACGCAGC AGCTCTCAGCGTACCACACAAATGTCCCTCAACCCCCCCTCCTCCGCCAT TGCCTTCCCCCCCCCCATCATTGATTGCTCCCCCCCCCCCCGAAAAACAA ATACAACAAACAGCGGGCCTGCGTCGCGGCATTCCCGCACCTTGGCGACA CCCCGTCGCCGTACCTGTCCTGCAGCGCTTACGAGGGCGACTGGCGGGAG ACGTTTCTGGACGGCAACAGGGGGAACCGCTCCACGGTGTTGGACTGGAA GATGGAGGCCGTCACCGGCGTAGACGAAGGCGACGGCGTTGACGACCCCG ATGAGGCGAGCTAGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGTGGGGTGGGGTGGGGGGGCCCGGGGGGGGGAAAAAAAATTTTAA AACATAAAAGAAAGTNNNNNNNNNNGGGAAGGGGGGGGGGCGCCCCGGGG GGAAGAGGGGGGGGCGGGGTGGACGCCCCGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGCAGCAGAGAGAGAGGGGTGTTCGCTATGATG GTGTAGCCCGAGAGAGGGCATAAATAGTTACATACATAGAAGTAGGTCTC TAGGAGAATGTGAAGGGGGTGCGCAGAGCAGGGTGGGATGGAGAGAAGGA GCGCTCCATAGCTCCTATGTGCCTTGTTGCGCCTTCTCTATAAAACCTTA TGTGTAGGCACGGCACTACACTACACTAAACCCCGACTCCGTGCACCCCC CTCCCCCCCTGCCGCAACTTCCCCGCTCAACACCGTTTTGTCTCCAGTCG CAGCGGAGGTTCTTCCCTCCCTTCTCCCTGTGCGGCTACTCCTTCAGCCT CCTGGCCGACCCCCGGGGCAACCCCCGTGCCACCAACCAAGTCCCGGCGG GGGCCCCCCGTGTGGAGAAGGGGCTCTCCGTCTACCTCACGGTTCTCTTC CAGGAGGACCCGCCAGACGCGCCGCCGTGGGGGGGGAGCGTGGCCGCCGC GTCCAGCCACGGCTTCCCCCCACCGCCACTGCCGTTGGGGCCGGGCCACC CCTGGGGAGCGGCGGAGGAGGGGGAGGAGGAGGACGAGGAGGACCAGGAT CGAGCGCGGCTTGGGGTGTTGGACGTCGAACAGGGTGGAGGTCTGGCACT GCGCGCGACCGGCGATGGCGTGTCAGATGAGAACGGGAAAGGCGACGCCA AAGAAGCGACGGCGGCGTGGGTGAAGAGGGACCCCCACGGGCTGCGGCGG CGCCGGCGGCGCGCGAGGACGCGCGAGGGCAAGGCCCCCGTGGTATCCCA CTTGGGCGATTCTGCGGCGATCGCCCGGGAGTGCTGCGCCGGCTTTTCGC TGACGGCGGTGAACAAGGACAGCGACAAGGACGTCATGTGGATATCCTCG ATGAAACGCGACCGTTTCTTCCCCGGAAGGAGCAGCTGGGGGGTGCACTG CCTCGTGCCGATGTCGACCTTCCAGGTGCGTTTTCTTGCACTCTCTTGGT ATTATTGGTGTGGGTTAGTGGTCCGTTCAGTGTTTGCGCCGATGCGGCCG CTGCGGCTTTGCTTGGTTTTGGCGCGAAGTCGTTGCGCGTGCACCTGGTC TTGCCCGACGTCGAGGGGAGGTGTTTTTAGCGAGCGTGAGCGGTGTCGTG CTCAGGAGCTGGAAGTTAACTACCGTAGGTGACACAAGATACCACACCCC CTGGACATATTTTATATTTTCAGAGCTCTATTCCTCCCCAGCAAGAAGAG CGCCACTGACGAAAGGAGGTGCGTTGGAAAGATCTAGGCGAGGGCTGTCC GAAAATGTGTCGTTTGGTGCTGGCACCCTCTTCGTTACGGAGCAACGGAG CTCTAAAATTCGGCCCAGGGGGTATGGTATCTTGTGTCACCTACGGTAGC TCAGCTTTGCCTCAGCAGCTGAAAAACGAAAATATAGCCACGTTGGCGGG TGTGGCGTTGGGGTGCGCGCTCCAAGCAGGGGCCGCTTAGCTCCAGCCTC CGGTGGGGTGCCCCGCAATTTTTCTTGGACGGGCCTTGCGAGGTGGTATC CGGCCAAATTCTGAGACTACTCAAGTCGGGGCTGCAGGTAGCCCAACGTC ATCCTCCCCGAAAGAAATGAAGTGTACATACGTATATTGGCTGTTGTGTT ATTTCAAAGTGTCAACGCCGCACTCCAAGAAATTTTGGCTCTCGGGGCGC AGGTTGTCTGTCTCCTTCACGCGACCCGCATTTCCGAAGAAAGCACGCCT CACGCGTTGGTTTTCGCGCTAAGCGCAGTGTCTAACTGTCGGGCCCGGCC TCTGCCTCTGAAGGGCAGTCCGGGATCACGGCATCACGGCCGCTACTCTA CTACTGTGTCTCGGTTTTTGAACCCCGGCCGCGCTGGTTTGTTTCTGATT TGGGAACACGGCCCGGACCGGACCGGTTTCCACAGGATCCGGAGGAAGGA TTCTTGCAGGGGGGGGCTGCAACGGTGCGGCTGCGCGTACGTCTTTTGTT TCTGACGGCGCACGTTTACACTACGGCCGACCTGGCGTCCCACCGCGGCT TTGGAGTTGTTCCGGTTCGCGGCAACGACCAGCCGTTTCATTTCCACGGC AAGCCGGAGGGGGGCCAAGGTGTGTTGTCGCGGTTTTGCGATGTGTGTTG CGTTTCGGTGTGTTGCGTTTCGGTTGGTCGAGGTCGTCGGCAGCTGTGTT GAAGGAACATGTTTTCAAACTCTCGTTCTCCCTTGAAGCTACGTGCTGCA CTCCTGTGTGCTTTGCTGCCGGTCGGCAGGCAGGCTCGTGGTCTTTTTGA AAGATAAGCAGATAATCAATAATGGAACCTAACCCACATTGGAGACGGGA CTCCCGTCATAATTTGCGGTATTCCATATAGTGACGTAATATTGGGCCGG CCGAGTAGAAAAACACCTAAACCTTTTTTTTCGATTTTTCGTTTTTTTCG TTTTTTTTTCGATTTTTCGTCTCGGCCGACCTTCGCCGGGTGTCGGCCGT CTCCGACACCGAAGGCCACACGGCTCCTCCTCCATCGTCCCCACCGATGC TATCGCCTCATCTTTTTATCCCAGAACCCACCCGGAGGGGCTAGATGGCC TCTGTTTAGTTCGTCCTTACCCCCCCCTACCGCTTGTTTCCTCCCACTCG CGCCCTATTCGTTTCAGAAAATTCCCGGAGCATGCCCTGGAATCCAGCCA CGAACAGCGTCAGCCCGGAGCGCACCGAGGAAAGCAGCAGCAGCAGCAGC AGCAACAGCAGCACGCCCGTCGCGGGCCCGCTGCCGTGCCTCACGTTCGA GGTCCTTCGGTGCACCACCCTGGAGGAGATGGTCAGCCTGGTCGCGCGGG CGCTCGGGTTGGACTCGAGCGAGATCCGGCTCTGGGTGATCACGCAGCAT CTCACCGACGCCCCGCTCGCTCCTCGGCAGCTGCTTAGGTGCGGCTGCGG CTTCTCCTTAAGTAGTTTTGTTGAGATGCGAGCGATTTATTAGGAGGATC CCCTGCACACAAGTCTTTGTATATTTATACACACGTTAAATACCCAGAGG ACAGTGTTATGTATATAGCTGTATGTATGGTGGATCGACTCCTGATGTTG AGGACACGCGCACTTTTTGTTTTTTGGCTGTCTCGATTTCAGCACCCCAG TTCTTTTCCCGGGGAAAAGGGAGAACTCCAGCGCTTTGATAAAAACATGT AGACCATCCGCGGCCCATATCGTATATAGCACGTTGAATTTTTTGTTGCC CTTCCTTCCACAACTCTCCGCACCAAATCTGCATCACGACCCCCCCACCC CCCCTCCCTCGTCTGCTCGACTTGCTTTTTTCCGGGACCATACCGATATT TTCATCCCTGCAGCGAGAAAGACCTACCGGCTCGCTTTTTCGACGACGGC CAGGCTTCGCCGAGCCTGTTCCGCCTCCTGAGCGGCGACGCCGTCGACGA GACGTGCAGGGTGCGCCTCTGGGTGCAGCAGCGCTCCGACGGCGGGTTCT GGGAGGCGGAGGCATCGGGGCCGCCGCACCCGTCGTCCTTCTGGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAGGTGGA GGAGGAGGCGGGGGTCCTCGCCGAACCGATGGCCGGTGCCGACGGAGATG CTTGCGAGGGAGGTGGAGGTGGGGGGGGAGGTGCTAGCAGCGGCCGGTGG TCTGAATCTTCCACTTCTTCTCCGTCAGGCCCGATGATGCCGCCGCGTGT TCGTTTTGGCGGCGTAAGGCTGTCCCGCGTTTCGGACTTGCCCTCAAGAC AAATGCAGCAGCTCTCGATGTTTGCGTGTGGCTCGGCCGGCGGCGGCGGC GGCAGCGGACCTGGTGGCGGACCTCCGGGGCAAGCTGGTGGCGGCGGGGT GGTGGAGCCAGCGTCGGCAGCGCCGGCCGGTGACGAGAATCTCGGCGGCG ACTCAGCGAGCGGGACAGGGGCTGTCGACACGGCCGGCGTGCCGACAGTC GTGGCGGAAGAGAGCCTCATGCTGGTGTTCCTCAAGACGCTTGGGCTGGG TAGCGCGGGAGAGCAAGAAAGCACAGCAGCAGCGGCAGGAGCAGGAGAAG AAGCAGCGGCAACGGTATCGGCGGCAGCGAGGGCGGCGGGGAAAGAAGCA GGCAGAGTCGGCGATGGCGGAATCGGCGCTACCAGCGTACAGGGGGGCCT GCCGACATACCTGACGCACGCGGTTATGCGGGGAAGCAGCCCCCTGCGAA GCCTTTTCGAGCTGACGGCGGAGCTGCTGCAGGACGGCACAGCCCCCGAG GACCTCGAGGCGCACATCGAGGACCTGCCGTGGGCCTGGCAAGTCGCGGC GTTGAGGGGCGCCGATGGCTCGGCGGCGGACCGTGTGCCGGACGGAGCCC CCTCGAGCAGCGGTGCTACCCAGAACCGCAAAAAAACTGTCGCCTGCCGG CGTTTCTTGGCGTGCCCGCCTACCGTGCTGGCCGCTGGGGTCGGTGCCAC CGGGCAGCAGGAGCAGGGCGGGTCCCCCGCTAGGCTGACGCTAGAGCAGG CCGGCCTTTCGTCCGGCGCTTCGATCTGCTTCTTCCGCGCCGGCGGGGAG GTCCTCGCCAGGAAGACTTACGGGGGCGTCGTGAAGGGCTTGGTGGAAGA CATGCGCCTGCTGCTGACGAGGAAGGGGCCGCTCGGACGTGTGCACCTCG TCAAGGTAACGGCATATTTGTTCGGTTGTTCTTCCGTTGATGGCTTCGCC GGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5368:5454..11206+

>mRNA_L-elsbetiae_contig5368.13565.1 ID=mRNA_L-elsbetiae_contig5368.13565.1|Name=mRNA_L-elsbetiae_contig5368.13565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5352bp|location=Sequence derived from alignment at L-elsbetiae_contig5368:5454..11206+ (Laminarionema elsbetiae ELsaHSoW15)
ACCTCGTTCCAGTTCTTGGACGGGAACGGGCTGCTGTCGTGCGAGTCCGT
GTCGTACCGTTGGCGGTGCGCGGCCGATAGAACCAGCCTGTGGAAGACCT
CGTTCCAGTTCTTGGACGGGAACGGGCTGCTGTCGTGCGAGTCCGTGTCG
TACCGTTGGCGGTGCGCGGCCGATAGAACCAGCCTGTGGAAGCGGGCCTG
CGTCGCGGCATTCCCGCACCTTGGCGACACCCCGTCGCCGTACCTGTCCT
GCAGCGCTTACGAGGGCGACTGGCGGGAGACGTTTCTGGACGGCAACAGG
GGGAACCGCTCCACGGTGTTGGACTGGAAGATGGAGGCCGTCACCGGCGT
AGACGAAGGCGACGGCGTTGACGACCCCGATGAGCGGGCCTGCGTCGCGG
CATTCCCGCACCTTGGCGACACCCCGTCGCCGTACCTGTCCTGCAGCGCT
TACGAGGGCGACTGGCGGGAGACGTTTCTGGACGGCAACAGGGGGAACCG
CTCCACGGTGTTGGACTGGAAGATGGAGGCCGTCACCGGCGTAGACGAAG
GCGACGGCGTTGACGACCCCGATGAGTCGCAGCGGAGGTTCTTCCCTCCC
TTCTCCCTGTGCGGCTACTCCTTCAGCCTCCTGGCCGACCCCCGGGGCAA
CCCCCGTGCCACCAACCAAGTCCCGGCGGGGGCCCCCCGTGTGGAGAAGG
GGCTCTCCGTCTACCTCACGGTTCTCTTCCAGGAGGACCCGCCAGACGCG
CCGCCGTGGGGGGGGAGCGTGGCCGCCGCGTCCAGCCACGGCTTCCCCCC
ACCGCCACTGCCGTTGGGGCCGGGCCACCCCTGGGGAGCGGCGGAGGAGG
GGGAGGAGGAGGACGAGGAGGACCAGGATCGAGCGCGGCTTGGGGTGTTG
GACGTCGAACAGGGTGGAGGTCTGGCACTGCGCGCGACCGGCGATGGCGT
GTCAGATGAGAACGGGAAAGGCGACGCCAAAGAAGCGACGGCGGCGTGGG
TGAAGAGGGACCCCCACGGGCTGCGGCGGCGCCGGCGGCGCGCGAGGACG
CGCGAGGGCAAGGCCCCCGTGGTATCCCACTTGGGCGATTCTGCGGCGAT
CGCCCGGGAGTGCTGCGCCGGCTTTTCGCTGACGGCGGTGAACAAGGACA
GCGACAAGGACGTCATGTGGATATCCTCGATGAAACGCGACCGTTTCTTC
CCCGGAAGGAGCAGCTGGGGGGTGCACTGCCTCGTGCCGATGTCGACCTT
CCAGTCGCAGCGGAGGTTCTTCCCTCCCTTCTCCCTGTGCGGCTACTCCT
TCAGCCTCCTGGCCGACCCCCGGGGCAACCCCCGTGCCACCAACCAAGTC
CCGGCGGGGGCCCCCCGTGTGGAGAAGGGGCTCTCCGTCTACCTCACGGT
TCTCTTCCAGGAGGACCCGCCAGACGCGCCGCCGTGGGGGGGGAGCGTGG
CCGCCGCGTCCAGCCACGGCTTCCCCCCACCGCCACTGCCGTTGGGGCCG
GGCCACCCCTGGGGAGCGGCGGAGGAGGGGGAGGAGGAGGACGAGGAGGA
CCAGGATCGAGCGCGGCTTGGGGTGTTGGACGTCGAACAGGGTGGAGGTC
TGGCACTGCGCGCGACCGGCGATGGCGTGTCAGATGAGAACGGGAAAGGC
GACGCCAAAGAAGCGACGGCGGCGTGGGTGAAGAGGGACCCCCACGGGCT
GCGGCGGCGCCGGCGGCGCGCGAGGACGCGCGAGGGCAAGGCCCCCGTGG
TATCCCACTTGGGCGATTCTGCGGCGATCGCCCGGGAGTGCTGCGCCGGC
TTTTCGCTGACGGCGGTGAACAAGGACAGCGACAAGGACGTCATGTGGAT
ATCCTCGATGAAACGCGACCGTTTCTTCCCCGGAAGGAGCAGCTGGGGGG
TGCACTGCCTCGTGCCGATGTCGACCTTCCAGGATCCGGAGGAAGGATTC
TTGCAGGGGGGGGCTGCAACGGTGCGGCTGCGCGTACGTCTTTTGTTTCT
GACGGCGCACGTTTACACTACGGCCGACCTGGCGTCCCACCGCGGCTTTG
GAGTTGTTCCGGTTCGCGGCAACGACCAGCCGTTTCATTTCCACGGCAAG
CCGGAGGGGGGCCAAGGATCCGGAGGAAGGATTCTTGCAGGGGGGGGCTG
CAACGGTGCGGCTGCGCGTACGTCTTTTGTTTCTGACGGCGCACGTTTAC
ACTACGGCCGACCTGGCGTCCCACCGCGGCTTTGGAGTTGTTCCGGTTCG
CGGCAACGACCAGCCGTTTCATTTCCACGGCAAGCCGGAGGGGGGCCAAG
AAAATTCCCGGAGCATGCCCTGGAATCCAGCCACGAACAGCGTCAGCCCG
GAGCGCACCGAGGAAAGCAGCAGCAGCAGCAGCAGCAACAGCAGCACGCC
CGTCGCGGGCCCGCTGCCGTGCCTCACGTTCGAGGTCCTTCGGTGCACCA
CCCTGGAGGAGATGGTCAGCCTGGTCGCGCGGGCGCTCGGGTTGGACTCG
AGCGAGATCCGGCTCTGGGTGATCACGCAGCATCTCACCGACGCCCCGCT
CGCTCCTCGGCAGCTGCTTAGAAAATTCCCGGAGCATGCCCTGGAATCCA
GCCACGAACAGCGTCAGCCCGGAGCGCACCGAGGAAAGCAGCAGCAGCAG
CAGCAGCAACAGCAGCACGCCCGTCGCGGGCCCGCTGCCGTGCCTCACGT
TCGAGGTCCTTCGGTGCACCACCCTGGAGGAGATGGTCAGCCTGGTCGCG
CGGGCGCTCGGGTTGGACTCGAGCGAGATCCGGCTCTGGGTGATCACGCA
GCATCTCACCGACGCCCCGCTCGCTCCTCGGCAGCTGCTTAGCGAGAAAG
ACCTACCGGCTCGCTTTTTCGACGACGGCCAGGCTTCGCCGAGCCTGTTC
CGCCTCCTGAGCGGCGACGCCGTCGACGAGACGTGCAGGGTGCGCCTCTG
GGTGCAGCAGCGCTCCGACGGCGGGTTCTGGGAGGCGGAGGCATCGGGGC
CGCCGCACCCGTCGTCCTTCTGGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGGAGCAGCAGGTGGAGGAGGAGGCGGGGGTCCTCGC
CGAACCGATGGCCGGTGCCGACGGAGATGCTTGCGAGGGAGGTGGAGGTG
GGGGGGGAGGTGCTAGCAGCGGCCGGTGGTCTGAATCTTCCACTTCTTCT
CCGTCAGGCCCGATGATGCCGCCGCGTGTTCGTTTTGGCGGCGTAAGGCT
GTCCCGCGTTTCGGACTTGCCCTCAAGACAAATGCAGCAGCTCTCGATGT
TTGCGTCGAGAAAGACCTACCGGCTCGCTTTTTCGACGACGGCCAGGCTT
CGCCGAGCCTGTTCCGCCTCCTGAGCGGCGACGCCGTCGACGAGACGTGC
AGGGTGCGCCTCTGGGTGCAGCAGCGCTCCGACGGCGGGTTCTGGGAGGC
GGAGGCATCGGGGCCGCCGCACCCGTCGTCCTTCTGGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAGGTGGAGGAGGAG
GCGGGGGTCCTCGCCGAACCGATGGCCGGTGCCGACGGAGATGCTTGCGA
GGGAGGTGGAGGTGGGGGGGGAGGTGCTAGCAGCGGCCGGTGGTCTGAAT
CTTCCACTTCTTCTCCGTCAGGCCCGATGATGCCGCCGCGTGTTCGTTTT
GGCGGCGTAAGGCTGTCCCGCGTTTCGGACTTGCCCTCAAGACAAATGCA
GCAGCTCTCGATGTTTGCGTCTGGTGGCGGCGGGGTGGTGGAGCCAGCGT
CGGCAGCGCCGGCCGGTGACGAGAATCTCGGCGGCGACTCAGCGAGCGGG
ACAGGGGCTGTCGACACGGCCGGCGTGCCGACAGTCGTGGCGGAAGAGAG
CCTCATGCTGGTGTTCCTCAAGACGCTTGGGCTGGGTAGCGCGGGAGAGC
AAGAAAGCACAGCAGCAGCGGCAGGAGCAGGAGAAGAAGCAGCGGCAACG
CTGGTGGCGGCGGGGTGGTGGAGCCAGCGTCGGCAGCGCCGGCCGGTGAC
GAGAATCTCGGCGGCGACTCAGCGAGCGGGACAGGGGCTGTCGACACGGC
CGGCGTGCCGACAGTCGTGGCGGAAGAGAGCCTCATGCTGGTGTTCCTCA
AGACGCTTGGGCTGGGTAGCGCGGGAGAGCAAGAAAGCACAGCAGCAGCG
GCAGGAGCAGGAGAAGAAGCAGCGGCAACGGGGGGCCTGCCGACATACCT
GACGCACGCGGTTATGCGGGGAAGCAGCCCCCTGCGAAGCCTTTTCGAGC
TGACGGCGGAGCTGCTGCAGGACGGCACAGCCCCCGAGGACCTCGAGGCG
CACATCGAGGACCTGCCGTGGGCCTGGCAAGTCGCGGCGTTGAGGGGCGC
CGATGGCTCGGCGGCGGACCGTGTGCCGGACGGAGCCCCCTCGAGCAGCG
GTGCTACCCAGAACCGCAAAAAAACTGTCGCCTGCCGGCGTTTCTTGGCG
TGCCCGCCTACCGTGCTGGCCGCTGGGGTCGGTGCCACCGGGCAGCAGGA
GCAGGGCGGGTCCCCCGCTAGGCTGACGCTAGAGCAGGCCGGCCTTTCGT
CCGGCGCTTCGATCTGCTTCTTCCGCGCCGGCGGGGAGGTCCTCGCCAGG
AAGACTTACGGGGGCGTCGTGAAGGGCTTGGTGGAAGACATGCGCCTGCT
GCTGACGAGGAAGGGGCCGCTCGGACGTGTGCACCTCGTCAAGGTAACGG
CATATTTGTTCGGTTGTTCTTCCGTTGATGGCTTCGCCGGGGGGGGCCTG
CCGACATACCTGACGCACGCGGTTATGCGGGGAAGCAGCCCCCTGCGAAG
CCTTTTCGAGCTGACGGCGGAGCTGCTGCAGGACGGCACAGCCCCCGAGG
ACCTCGAGGCGCACATCGAGGACCTGCCGTGGGCCTGGCAAGTCGCGGCG
TTGAGGGGCGCCGATGGCTCGGCGGCGGACCGTGTGCCGGACGGAGCCCC
CTCGAGCAGCGGTGCTACCCAGAACCGCAAAAAAACTGTCGCCTGCCGGC
GTTTCTTGGCGTGCCCGCCTACCGTGCTGGCCGCTGGGGTCGGTGCCACC
GGGCAGCAGGAGCAGGGCGGGTCCCCCGCTAGGCTGACGCTAGAGCAGGC
CGGCCTTTCGTCCGGCGCTTCGATCTGCTTCTTCCGCGCCGGCGGGGAGG
TCCTCGCCAGGAAGACTTACGGGGGCGTCGTGAAGGGCTTGGTGGAAGAC
ATGCGCCTGCTGCTGACGAGGAAGGGGCCGCTCGGACGTGTGCACCTCGT
CAAGGTAACGGCATATTTGTTCGGTTGTTCTTCCGTTGATGGCTTCGCCG
GG
back to top