mRNA_L-elsbetiae_contig5351.13533.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig5351.13533.1
Unique Name	mRNA_L-elsbetiae_contig5351.13533.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig5351.13533.1 vs. uniprot
Match: D8LJT5_ECTSI (Temporarily Assigned Gene name family member (Tag-262) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT5_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 5.030e-26
Identity = 74/105 (70.48%), Postives = 80/105 (76.19%), Query Frame = 3

Query:  138 MADEDALFAEFMGEIKSTVVATE----------DDGAASDTASVGDVNVDNDEGGK--KEDAETNKRRGE--ASPSPAAKKPKFMGKLVAAALPVKAGAIASAST 410
            MADEDALFAEFMGEIKSTVVA E          DDGAASD ASVGDV  D+ EGG   +  A+T KRRGE  ASPSPA KKP+FMGKLVAAA PVKAGA+A+AST
Sbjct:    1 MADEDALFAEFMGEIKSTVVAAETKGAADAGEEDDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAAST 105

[Close]

BLAST of mRNA_L-elsbetiae_contig5351.13533.1 vs. uniprot
Match: A0A6H5KAJ6_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.720e-24
Identity = 71/103 (68.93%), Postives = 78/103 (75.73%), Query Frame = 3

Query:  138 MADEDALFAEFMGEIKSTVVATE---------DDGAASDTASVGDVNVDNDEGG--KKEDAETNKRRG-EASPSPAAKKPKFMGKLVAAALPVKAGAIASAST 410
            M+DEDA+FAEFMGEIKSTVVA E         DDGAASD ASVGDV  D  EGG   +  A+T KRR  EASPSPA KKP+FMGKLVAAA PVKAGA+A+AST
Sbjct:    1 MSDEDAIFAEFMGEIKSTVVAAETKTASDAGEDDGAASDAASVGDVQADGTEGGGEARNHADTTKRRETEASPSPAPKKPRFMGKLVAAAPPVKAGAVAAAST 103

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig5351.13533.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig5351.13533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LJT5_ECTSI	5.030e-26	70.48	Temporarily Assigned Gene name family member (Tag-...	[more]
A0A6H5KAJ6_9PHAE	1.720e-24	68.93	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig5351	contig	L-elsbetiae_contig5351:10483..12375 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	114.0
Seed ortholog evalue	6.1e-23
Seed eggNOG ortholog	2880.D8LJT5
Preferred name	RBM42
Hectar predicted targeting category	other localisation
GOs	GO:0000075,GO:0000077,GO:0000278,GO:0000375,GO:0000377,GO:0000398,GO:0001654,GO:0002088,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0006978,GO:0007049,GO:0007050,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007423,GO:0008150,GO:0008152,GO:0008285,GO:0008380,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010948,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022402,GO:0023052,GO:0030330,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031570,GO:0031571,GO:0032501,GO:0032502,GO:0033119,GO:0033554,GO:0034641,GO:0035556,GO:0042127,GO:0042770,GO:0042772,GO:0043010,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0043487,GO:0043488,GO:0043489,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045786,GO:0045787,GO:0045930,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048255,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048856,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0051726,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070935,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902369,GO:1902373,GO:1902400,GO:1902402,GO:1902403,GO:1902806,GO:1902807,GO:1903047,GO:1903311,GO:1903312,GO:2000045,GO:2000134
EggNOG free text desc.	RNA binding
EggNOG OGs	KOG0226@1,KOG0226@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	2
Model size	590
Cds size	453
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig5351.13533.1	prot_L-elsbetiae_contig5351.13533.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig5351 10620..12375 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816556.1394017-UTR-L-elsbetiae_contig5351:10482..10619	1622816556.1394017-UTR-L-elsbetiae_contig5351:10482..10619	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig5351 10483..10619 +
1691683644.885846-UTR-L-elsbetiae_contig5351:10482..10619	1691683644.885846-UTR-L-elsbetiae_contig5351:10482..10619	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig5351 10483..10619 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816556.1524086-CDS-L-elsbetiae_contig5351:10619..10793	1622816556.1524086-CDS-L-elsbetiae_contig5351:10619..10793	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig5351 10620..10793 +
1691683644.9036956-CDS-L-elsbetiae_contig5351:10619..10793	1691683644.9036956-CDS-L-elsbetiae_contig5351:10619..10793	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig5351 10620..10793 +
1622816556.1664033-CDS-L-elsbetiae_contig5351:12096..12375	1622816556.1664033-CDS-L-elsbetiae_contig5351:12096..12375	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig5351 12097..12375 +
1691683644.9125636-CDS-L-elsbetiae_contig5351:12096..12375	1691683644.9125636-CDS-L-elsbetiae_contig5351:12096..12375	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig5351 12097..12375 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig5351:10483..12375+
coding sequence from alignment at L-elsbetiae_contig5351:10483..12375+

protein sequence of mRNA_L-elsbetiae_contig5351.13533.1

>prot_L-elsbetiae_contig5351.13533.1 ID=prot_L-elsbetiae_contig5351.13533.1|Name=mRNA_L-elsbetiae_contig5351.13533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
MADEDALFAEFMGEIKSTVVATEDDGAASDTASVGDVNVDNDEGGKKEDA
ETNKRRGEASPSPAAKKPKFMGKLVAAALPVKAGAIASASTASASSVAAE
KSSKTTTTGASKVGLVAAVAAVSSAKAKAKSANGSAAAAAAASDGATGDK
Q

mRNA from alignment at L-elsbetiae_contig5351:10483..12375+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig5351.13533.1 ID=mRNA_L-elsbetiae_contig5351.13533.1|Name=mRNA_L-elsbetiae_contig5351.13533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1893bp|location=Sequence derived from alignment at L-elsbetiae_contig5351:10483..12375+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTAACACTGTGTGTAGCTGGTGGACTAGCCCCTTCTCTCGCAGGCTGG
TGCCACGTACAACAACCACACACCCCGGGAACTAGTGGTGGGTAGGGACA
GAGAAACAGAAAATAAAGCAGTGAGTGAGATTCCAACATGGCGGACGAGG
ATGCTCTCTTCGCGGAGTTTATGGGGGAGATCAAGAGCACCGTTGTGGCC
ACGGAAGACGATGGGGCTGCTTCTGACACGGCATCGGTGGGCGATGTCAA
CGTCGACAATGACGAGGGAGGAAAAAAGGAAGACGCCGAGACCAACAAGC
GAAGAGGAGAGGTATGTATTGGCGGCAGGACCTAGATTACACTTAATTAA
CTGGACTTGCCGATCACGTGTAGCGGAGAGCCCGTTTGCGAGGTGATCAC
CTGCCTCGCTGTGTGCGTCGCTCCTTTGCCCTGTTGTTTGCACCCCCAAG
CAAGGTGAGTCTACGTGAACAGTGACTGTTAAAAGTAGTTGTTCTATATT
CCAATGAATTGCCAATCAACTCACCAGCACCGCATGGTATCCTAGCACTA
GATCACTGCTATCGTCTGTTGACTACCGTAGGTGACACAAGATACCACAC
CCCCTGGGCTGAATTTTAGAGCTCCATTACTCCGTAACAAAAAAGGTGCC
AGCACCAAACGGTACATTTTCAGGCAGCCCTCGCCTAGATCTTTCCAACG
CACCCCCTTTCGGCATTGATACTCTTCTTGCTGGAGAGGAATCGAGCTTT
GAAAATCTGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTACATACT
ACGTATGTTGTACACGCGGGAGGCCAGATAGATGGCAGACGGCAATCATC
CAGCTACAATAGCAACCGTGTTTAATTTGCATCCCACTTGCCTCACCTAG
TGACCCGTGCACAACAACGGCATCGGTTTGCTCGCTCGTGTAGCGATCGT
GGGCGACTCTCACCGGCGCTTAAAGAGTGGTGTAAGTGAACCATGTAACT
ACAGCATAGGTTACAGCAGTCATGTACATGGCAGTACAAAAACCACCATC
CGCAAGCAACTTTCCGCGGTGTAAGTTTCAGTATCGCAAGTAAGCCGTAC
CCACGTATGTACATCAATATATATGTTGTGTATGTTATGTGCACGTCCTC
ACTTCTCTACAGCCTATGCATGCAAGTCCGTTACTGCAAGATTTAAGTCC
AACGTGGGAGAGTGCATGTAGACTTTGGCTTCCAAGACTGCTACGTAGAT
ACATACATACATATGTACACACAATGGATCGAGCCCCCCTTTCCAACAAG
CCCAAGATATTAGTTTTACGAAAGTTTGTATCTCGCGAAGCCTAGTCTAC
AGTCTGTCTGCCGATCATCTGTGTACCGCTTCTCTGTCCGGGCTCCTTTA
ACCTCGGAGCTTTGGGAGGACGCTTCACGTTTCAACACGTAAATGCTGAG
CTCCTCCGAACTCTGTATGCATAGGGTTAGGGTTAAAAATAACTGCAGTC
GCCTGAGCGTTCCGATTCCACCAAGCCACACTACACTACACCACACCACA
CCACCATCGCCGCTTTGTGCTTGTTCGCTTTGCTTGTCACTTGCCCCGCC
GCGGTGGACAACAGGCATCCCCTTCCCCAGCGGCGAAAAAGCCCAAGTTT
ATGGGGAAGCTGGTGGCGGCTGCTCTCCCCGTGAAGGCTGGCGCGATAGC
TTCAGCTTCGACCGCAAGCGCCTCCTCTGTGGCGGCAGAAAAATCGTCCA
AAACGACGACGACCGGCGCCTCAAAAGTTGGCCTTGTCGCTGCTGTTGCC
GCGGTTTCCTCGGCGAAGGCGAAGGCGAAGAGCGCCAACGGGAGTGCTGC
TGCTGCTGCAGCGGCGAGCGATGGGGCGACCGGCGACAAACAG

Coding sequence (CDS) from alignment at L-elsbetiae_contig5351:10483..12375+

>mRNA_L-elsbetiae_contig5351.13533.1 ID=mRNA_L-elsbetiae_contig5351.13533.1|Name=mRNA_L-elsbetiae_contig5351.13533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig5351:10483..12375+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGACGAGGATGCTCTCTTCGCGGAGTTTATGGGGGAGATCAAGAG
CACCGTTGTGGCCACGGAAGACGATGGGGCTGCTTCTGACACGGCATCGG
TGGGCGATGTCAACGTCGACAATGACGAGGGAGGAAAAAAGGAAGACGCC
GAGACCAACAAGCGAAGAGGAGAGATGGCGGACGAGGATGCTCTCTTCGC
GGAGTTTATGGGGGAGATCAAGAGCACCGTTGTGGCCACGGAAGACGATG
GGGCTGCTTCTGACACGGCATCGGTGGGCGATGTCAACGTCGACAATGAC
GAGGGAGGAAAAAAGGAAGACGCCGAGACCAACAAGCGAAGAGGAGAGGC
ATCCCCTTCCCCAGCGGCGAAAAAGCCCAAGTTTATGGGGAAGCTGGTGG
CGGCTGCTCTCCCCGTGAAGGCTGGCGCGATAGCTTCAGCTTCGACCGCA
AGCGCCTCCTCTGTGGCGGCAGAAAAATCGTCCAAAACGACGACGACCGG
CGCCTCAAAAGTTGGCCTTGTCGCTGCTGTTGCCGCGGTTTCCTCGGCGA
AGGCGAAGGCGAAGAGCGCCAACGGGAGTGCTGCTGCTGCTGCAGCGGCG
AGCGATGGGGCGACCGGCGACAAACAGGCATCCCCTTCCCCAGCGGCGAA
AAAGCCCAAGTTTATGGGGAAGCTGGTGGCGGCTGCTCTCCCCGTGAAGG
CTGGCGCGATAGCTTCAGCTTCGACCGCAAGCGCCTCCTCTGTGGCGGCA
GAAAAATCGTCCAAAACGACGACGACCGGCGCCTCAAAAGTTGGCCTTGT
CGCTGCTGTTGCCGCGGTTTCCTCGGCGAAGGCGAAGGCGAAGAGCGCCA
ACGGGAGTGCTGCTGCTGCTGCAGCGGCGAGCGATGGGGCGACCGGCGAC
AAACAG