mRNA_L-elsbetiae_contig5343.13523.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5343.13523.1
Unique NamemRNA_L-elsbetiae_contig5343.13523.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5343.13523.1 vs. uniprot
Match: D8LFA1_ECTSI (BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI)

HSP 1 Score: 468 bits (1205), Expect = 1.730e-142
Identity = 341/626 (54.47%), Postives = 377/626 (60.22%), Query Frame = 1 
Query:    1 RTVLVNASSQPXXXXXXVVQPACLILERLAGETFPLVQYDFVDLVYTLLEMAASRFLDVSLVCIGHLRLCARHLAEGDVDVALQRPLPEVTVSNTGQLPPEVLNAVRADHGGGXXXXXXXXXXXXXXXXXXXXXXXGSTG----REREAARSDAVGHLTLDLATLGSPILGEE-GGEXXXXXXRPGTAAAVDAGAAATRESGHRIGRQEEXXXXXXXXXXXKAGRISLTSAAATAATGWGIGAVRHTRLALQLWWPLLAGLAGGAGDPRLDCRAAALSTLQDVLKEFGSAPEFSPRVWPFLLTRILLPVSRHVVRTTPSVPPPALPPSLLGSNAPPPSTPSRHSRHRRAQSALSMTAPSALPSPRSGPFRL--------------PLASVGVGDTEAPGPASAGVFPLDVDSWVHTTAPQLFRAAVSVVASNAQTAAPLGVPTLLAFFEPHICCRXXXXXXHDGEIGESGGGRSRAGSLSSNLSCPRADRREAGSTAAAAKKESERQTGPDDGRGPGSGDNGDPGRYPEGEVGAAVAAGA---------------------AVAEEAGVSGDGLMSRMALESVGLLVEGLAGQNKQASPA-VLAHLCGCLVHMLDCCLPDSFGLEG 1755
            +TVL    S        VVQPACLILE LAGETFPLVQYDFVDLVYTLLEMAASRFLDVSLVCIGHLRLCAR LAEG VDVALQRPLPE T+SNTGQLPPEVL AVRAD+GGGXXXXXXXXXXXXXXXXXXXXXXX        R R AAR+DAVGHLTLDL +L  P+  +E GG             AV    A   +   R+    +             G+         AA   G+GA   +RLALQLWWPLL GLA GAGDPRLDCRAAALSTLQDVLKEFGSAPEFS RVWP+LLTRILLPVSR   +TTP +   A P +                   R Q+  +   PSALPSP SG  RL              P+A        APGPAS GV PLDVDSWVHTTAPQLFRAAV+VV+SNA+ A PLGVPTLLAFFEPH+CCR             S G  SR  S+SSN        R+ G+  A             +G   GSGD G+     E        A                       AVAEEAGV GDGLMSR+ALES+GLLVEGLAG  ++  PA VLAH+C  L+ ML  CLP+SFG  G
Sbjct: 1453 KTVLTVLRSAAADTQEEVVQPACLILEGLAGETFPLVQYDFVDLVYTLLEMAASRFLDVSLVCIGHLRLCARQLAEGGVDVALQRPLPEATISNTGQLPPEVLGAVRADYGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSRRAARNDAVGHLTLDLDSLDPPVPPDEAGGAVADPPAAXXXXVAVPTPTATGEDRAGRVSPSSDMWPSSAR------GKRGSNGVGGVAAAEGGVGAAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQDVLKEFGSAPEFSLRVWPYLLTRILLPVSRLAEKTTPPL---AAPTAXXXXXXXXXXXXXXXXXXXRRQAQPATATPSALPSPGSGHLRLGPSSSLSAASGGRVPVARAAAATAAAPGPASRGVLPLDVDSWVHTTAPQLFRAAVAVVSSNAEAAVPLGVPTLLAFFEPHVCCRRHRHST-------SNGSSSRFCSVSSNS-------RQLGTGVAV------------NGGREGSGDEGESLARQEQRHQVQEDAXXXXXXXXXXXXXXXXXXXXXXXAVAEEAGVPGDGLMSRLALESLGLLVEGLAGHQQEKLPAAVLAHVCDSLLRMLRRCLPESFGRAG 2043
[Close]
BLAST of mRNA_L-elsbetiae_contig5343.13523.1 vs. uniprot
Match: A0A6H5KJ76_9PHAE (DUF1981 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ76_9PHAE)

HSP 1 Score: 449 bits (1156), Expect = 5.480e-140
Identity = 334/614 (54.40%), Postives = 371/614 (60.42%), Query Frame = 1 
Query:    1 RTVLVNASSQPXXXXXXVVQPACLILERLAGETFPLVQYDFVDLVYTLLEMAASRFLDVSLVCIGHLRLCARHLAEGDVDVALQ---RPLPEVTVSNTGQLPPEVLNAVRADHGGGXXXXXXXXXXXXXXXXXXXXXXXGSTGREREAARSDAVGHLTLDLATLGSPILGEEGGEXXXXXXRPGTAAAVDAGAAATRESGHRIGRQEEXXXXXXXXXXXKAGRISLTSAAATAATGWGIGAVRHTRLALQLWWPLLAGLAGGAGDPRLDCRAAALSTLQDVLKEFGSAPEFSPRVWPFLLTRILLPVSRHVVRTTPSVPPPALPPSLLGSNAPPPSTPSRHSRHRRAQSALSMTAPSALPSPRSGPFRL--------------PLASVGVGDTEAPGPASAGVFPLDVDSWVHTTAPQLFRAAVSVVASNAQTAAPLGVPTLLAFFEPHICCRXXXXXXHDGEIGESGGGRSRAGSLSSNLSCPRADRREAGSTAAAAKKESERQTGPDDGRGPGSGDNGDPGRYPEGEVGAAVAAGAAVAEEAGVSGDGLMSRMALESVGLLVEGLAG-QNKQASPAVLAHLCGCLVHMLDCCLPDSFGLEGRAAVHGANGDE 1788
            +TVL    S        VVQPACLILE LAGETFPLVQYDFVDLVYTLLEMAASRFLDVSLVCIGHLRLCAR LAEG VDVALQ   RPLPE T+SNTGQLPPEVL AVRAD G  XXXXXXXXXXXXXXXXXXXXXXX    R R AAR+DAVGHL LDL +L  P+  E GG        P  AAAV A    T     + GR              K G   +       A G G+ A   +RLALQLWWPLL GLA GAGDPRLDCRAAALSTLQDVLKEFGSA EFS RVWP+LLTRILLPVSR   +TTP +  P +P +                   R Q+  +  A SALPSP SG  RL              P+A        APGPAS GV PLDV SWVHTTAPQLFRAAV+V++SNA+ A PLGVPTLLAFFEPH+CCR       +G  G      S +  L +  +     R  +G       ++ +R  G +D                             VAEEAGV GDGLMSR+ALES+GLLVEGLAG Q +Q   AVLAHLC  L+ ML  CL +SFG  GR   H + G E
Sbjct:  113 KTVLTVLRSAAADTQEEVVQPACLILEELAGETFPLVQYDFVDLVYTLLEMAASRFLDVSLVCIGHLRLCARQLAEGGVDVALQPNKRPLPETTISNTGQLPPEVLGAVRADRGXXXXXXXXXXXXXXXXXXXXXXXXXXR--RFRRAARNDAVGHLALDLDSLDPPVPDEAGGSVADP---PAVAAAV-AVPTPTATGEDKAGRVSPSSDMWPSSAHGKRGSNGVGGV--VTAEG-GVVAAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQDVLKEFGSASEFSLRVWPYLLTRILLPVSRLAEKTTPPLAAPMVPATXXXXXX---XXXXXXXXXXRLQAQPATAASSALPSPGSGHLRLGPSSSLSAASGGRVPVARTAAAVAAAPGPASRGVLPLDVGSWVHTTAPQLFRAAVAVISSNAEAAVPLGVPTLLAFFEPHVCCRRHRHSTSNGRSGRFYSVSSNSRQLGTGDTV-NGGREGSGGEGERVARQEQRHQGQEDAXXXXXXXX----XXXXXXXXXXXXXXXXVAEEAGVPGDGLMSRLALESLGLLVEGLAGHQQEQIPAAVLAHLCDSLLRMLRRCLSESFGRAGRVG-HDSGGGE 708
[Close]
BLAST of mRNA_L-elsbetiae_contig5343.13523.1 vs. uniprot
Match: A0A835ZB96_9STRA (SEC7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB96_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.340e-10
Identity = 65/203 (32.02%), Postives = 85/203 (41.87%), Query Frame = 1 
Query:  709 GAVRHTRLALQLWWPLLAGLAGGAGDPRLDCRAAALSTLQDVLKEFGSAPEFSPRVWPFLLTRILLPVSRHV---VRTTPSVPPPALPPSLLGSNAPPPSTPSRHSRHRRAQSALSMTAPSALPSPRSGPFRLPLASVGVGDTEAPGPASAGVFPLDVDSWVHTTAPQLFRAAVSVVASNAQTAAPLG--VPTLLAFFEPHIC 1302
            GA R  RLAL  WWPLL GL+   GD RLD R+AA+STL+D+L+++G+ PEF    W  +   +L    RH    +  TPS          LGS                   AL                                P     FPL +DSW+ TT PQ+F++ V V   N + A P    +P LL F   + C
Sbjct:  741 GASRRARLAL--WWPLLTGLSECQGDSRLDQRSAAISTLRDLLRDYGALPEFDV-AWGAVFRCVLFAPMRHAAGDLTVTPS----------LGS-------------------AL--------------------------------PTQGNDFPLHMDSWIATTVPQVFQSVVDVYVKNVR-APPCAACLPDLLEFLGYYAC 878
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5343.13523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFA1_ECTSI1.730e-14254.47BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax... [more]
A0A6H5KJ76_9PHAE5.480e-14054.40DUF1981 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835ZB96_9STRA3.340e-1032.02SEC7 domain-containing protein n=1 Tax=Tribonema m... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5343contigL-elsbetiae_contig5343:386..3889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score477.2
Seed ortholog evalue1.2e-131
Seed eggNOG ortholog2880.D8LFA1
KEGG koko:K18442
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0929@2759
Ec32 ortholog descriptionBIG2, ArfGEF protein of the BIG/GBF family
Ec32 orthologEc-01_004200.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons4
Model size1934
Cds size1932
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5343.13523.1prot_L-elsbetiae_contig5343.13523.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5343 386..3887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816555.0314844-CDS-L-elsbetiae_contig5343:385..5491622816555.0314844-CDS-L-elsbetiae_contig5343:385..549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5343 386..549 +
1691683644.0800707-CDS-L-elsbetiae_contig5343:385..5491691683644.0800707-CDS-L-elsbetiae_contig5343:385..549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5343 386..549 +
1622816555.0449636-CDS-L-elsbetiae_contig5343:993..10811622816555.0449636-CDS-L-elsbetiae_contig5343:993..1081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5343 994..1081 +
1691683644.0907717-CDS-L-elsbetiae_contig5343:993..10811691683644.0907717-CDS-L-elsbetiae_contig5343:993..1081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5343 994..1081 +
1622816555.0564594-CDS-L-elsbetiae_contig5343:1951..25391622816555.0564594-CDS-L-elsbetiae_contig5343:1951..2539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5343 1952..2539 +
1691683644.1004503-CDS-L-elsbetiae_contig5343:1951..25391691683644.1004503-CDS-L-elsbetiae_contig5343:1951..2539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5343 1952..2539 +
1622816555.0720725-CDS-L-elsbetiae_contig5343:2795..38871622816555.0720725-CDS-L-elsbetiae_contig5343:2795..3887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5343 2796..3887 +
1691683644.1098468-CDS-L-elsbetiae_contig5343:2795..38871691683644.1098468-CDS-L-elsbetiae_contig5343:2795..3887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5343 2796..3887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5343.13523.1

>prot_L-elsbetiae_contig5343.13523.1 ID=prot_L-elsbetiae_contig5343.13523.1|Name=mRNA_L-elsbetiae_contig5343.13523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=644bp
RTVLVNASSQPPPPKKKVVQPACLILERLAGETFPLVQYDFVDLVYTLLE
MAASRFLDVSLVCIGHLRLCARHLAEGDVDVALQRPLPEVTVSNTGQLPP
EVLNAVRADHGGGSGSSSGSGSGSGSGSGSDREDEDGSTGREREAARSDA
VGHLTLDLATLGSPILGEEGGEEEGGEKRPGTAAAVDAGAAATRESGHRI
GRQEEEEEEEEEENENKAGRISLTSAAATAATGWGIGAVRHTRLALQLWW
PLLAGLAGGAGDPRLDCRAAALSTLQDVLKEFGSAPEFSPRVWPFLLTRI
LLPVSRHVVRTTPSVPPPALPPSLLGSNAPPPSTPSRHSRHRRAQSALSM
TAPSALPSPRSGPFRLPLASVGVGDTEAPGPASAGVFPLDVDSWVHTTAP
QLFRAAVSVVASNAQTAAPLGVPTLLAFFEPHICCRRRRRRRHDGEIGES
GGGRSRAGSLSSNLSCPRADRREAGSTAAAAKKESERQTGPDDGRGPGSG
DNGDPGRYPEGEVGAAVAAGAAVAEEAGVSGDGLMSRMALESVGLLVEGL
AGQNKQASPAVLAHLCGCLVHMLDCCLPDSFGLEGRAAVHGANGDEHAAG
AGVDGTGGSGAASPGGGSVRVLFDGGGGGGDAAAGRQDAAGKAS
back to top

mRNA from alignment at L-elsbetiae_contig5343:386..3889+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5343.13523.1 ID=mRNA_L-elsbetiae_contig5343.13523.1|Name=mRNA_L-elsbetiae_contig5343.13523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3504bp|location=Sequence derived from alignment at L-elsbetiae_contig5343:386..3889+ (Laminarionema elsbetiae ELsaHSoW15)
CGGACCGTGCTGGTGAACGCCTCCTCGCAACCCCCCCCCCCAAAAAAAAA
GGTGGTGCAGCCGGCGTGCTTGATCCTGGAGCGGCTGGCGGGCGAGACCT
TTCCGCTCGTGCAGTACGACTTTGTCGACCTGGTCTACACCCTGTTGGAG
ATGGCTGCTTCGAGGTTCGTTAGTTAGACCGCAAGCGTGCACGCACGCAC
ACGCACGCCTTAAATTCTTGAATATTTCAGCTTGAATCCTGTGCGTATTA
TTGTTGTTCGGACTTGGTGTGTTTTGTCCCGTTATCGTTGTGTTGACTTT
CACCATACCCTTGGATAAGGGGCCTCCGTGCGGATTTTGAGGGGTTGGAG
GGGGGGGGGGGTCAGGGCCGGCTCCTCGCGGTCGCTGGGTCCAAGTCTCT
AAACTGGCGTCCTCTTTTTCTTTTCCTCGTTTTTCTCCTTCTGTGTTTGT
TGCGCGGGTGCATGCTTGTCGCGTCCGGCAAGGCCGGGAGCCTCGCGGAC
AGCAGGCAGGCATGCATCCAATGCCGCTTTTTTATTCTCGTGTTTCGCTG
AGGTGGCTTGTACTTCTGTAACCACTGCTGTTGTCTTTTGTCTGTTTGGG
CGGGGCAGGTTTCTGGATGTCAGCCTGGTGTGCATCGGGCACCTGCGGCT
GTGCGCCCGGCATCTGGCCGAGGGCGACGTCGACGTGGCGCTCCAGGTGA
GTCAGACCATGGAACCGACCAGCTCTTTTGGACGCCCTACCCGCCCCACC
CCTAGTATGCCGCTCCCTTGGTTCGTAGACGACCGATCTGCTGCCACTAC
TGCGACTGTTGCCACCACGCCCTTTGTTTTTCTCTCTTTCACTTTCTCTT
TCTACCTCTCTCTCTCTGTGTGTCTTCCTCTCTCTCTAGCTGTCTACTTG
AACGCGCGTATCTATCTGTCTATCTTTATTTTCTCTCGATCAACCAATCG
ATGAAGTAAGTGGTGCATCACCCCGAGCAGGCGTAACCCTGCCGGCGCTG
GTGTCATATACTCATATGGTAGGAAGTGCGCCATAAGTCAACTCCGCAAT
GGGGGGCAGATTGTATCTGATTGTACCTATCTCGCCAATGACGTTCCCCA
CGATGCTGTAGTTTGATTTCTGAAAAACTATATACGAAGACGGTGATTCT
CTTAGGAATAAAAACAGATTTCAATTAAAAAAACACCAAAGATAAAAAAA
AAGATGCTTTCTGAATCGTAAATCATTACGACCTTTACAACTACAGGAAG
TATGCTATAAGGTACTGCCAGACTTTGTGTCTCCTGCTGTCGCCGCTATG
CACGAACATTCAACCATGATGAACATCATGACTATCATCATCGTCATCGT
GTCAAACACGACTGCTGCACCCTGCACCCCCTGTGTGTTGGGGTGATGAG
TAGCCGGGGTGCGTCTTGGTGCTAAACAGACAAACAACAGTCAAGATAAC
GAAGATGCGCCATCGCACCACCCCGTCCGCCAAGGGACCGCCCCGTCGCC
TTTTGTCTCTGCTCCATCACCACCATGCACACATATGTACCACCCTTGGC
CGTCTCTGTCTCCCAGCGCCCCCTCCCCGAGGTGACCGTCTCCAACACGG
GCCAGCTCCCGCCGGAGGTCCTGAACGCCGTGAGAGCCGACCACGGTGGC
GGCAGCGGCAGCAGCAGCGGCAGCGGCAGCGGCAGTGGCAGCGGCAGTGG
CAGCGACCGGGAGGACGAGGACGGCAGCACCGGGAGGGAGAGGGAAGCTG
CACGGAGCGACGCCGTCGGCCACCTCACCCTAGACCTCGCGACGCTCGGC
TCGCCCATCCTCGGCGAGGAAGGGGGAGAGGAAGAGGGGGGCGAGAAGAG
GCCGGGGACAGCGGCGGCTGTCGACGCAGGCGCGGCAGCTACGCGAGAGA
GTGGGCATCGGATAGGGCGGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGAACGAAAACAAGGCCGGCAGGATTTCGCTTACGTCGGCGGCGGCGAC
AGCGGCGACAGGGTGGGGAATCGGAGCGGTGAGGCACACTCGTCTTGCCC
TCCAGCTTTGGTGGCCGCTGCTGGCCGGCCTGGCCGGAGGGGCGGGGGAT
CCGCGGCTGGACTGTCGCGCGGCGGCCCTCTCGACCCTCCAGGACGTCTT
GAAGGTGAGCCGGTTCCTCGGCCGGGTAAAGGGCTGCTGCCTCTCTGTAC
ACACTTTTAGTTGTTTTACAGGCCTGTGTCTTTGTTCGGTTTGTTGTGGT
ATTCTGTGTGAAGGTTGGCAGCCCTTTTTGTTTCAGGCTATCGCTGCTTG
ACTCCCTCTTTTTCTTGTTTCGTCCTCACCGCTGTTGTTGTCTTTTTCGT
TTTTTTGTTTTTCCCGGCCCCATCGTGCCACTCCTCTCGGCTGGTTACTC
ATCCGAAAAGGAGTTCGGGTCTGCCCCGGAGTTCTCGCCTCGCGTGTGGC
CCTTCCTCTTGACGCGCATCCTCCTGCCGGTTTCGCGGCACGTGGTGAGA
ACGACGCCGTCGGTGCCTCCGCCGGCCCTGCCGCCATCTCTGCTGGGATC
GAACGCGCCACCGCCGTCGACACCCTCCCGCCACAGCCGCCACCGTCGCG
CGCAGTCGGCGTTGTCGATGACGGCACCCTCGGCGCTGCCGAGCCCGAGG
AGCGGGCCGTTTCGGCTCCCTCTGGCTAGTGTCGGTGTCGGGGATACGGA
GGCGCCGGGCCCCGCCAGCGCCGGTGTGTTTCCGCTCGACGTCGACTCGT
GGGTGCACACGACGGCGCCGCAGCTGTTCCGTGCGGCCGTGTCTGTCGTC
GCGAGCAACGCCCAGACCGCCGCGCCGCTGGGGGTTCCCACCCTTTTGGC
GTTTTTCGAGCCGCACATTTGCTGCCGGCGGCGGCGGCGGCGGCGACACG
ACGGCGAGATCGGTGAGAGCGGCGGCGGCCGGAGCCGTGCCGGCAGCCTC
AGCAGCAACCTCAGCTGTCCTCGAGCAGATCGGCGAGAAGCCGGGAGCAC
CGCTGCTGCGGCCAAGAAGGAGTCGGAGAGGCAGACGGGGCCGGACGACG
GCAGAGGCCCGGGCAGTGGAGACAACGGCGACCCCGGACGGTATCCGGAA
GGGGAGGTGGGCGCAGCGGTAGCGGCCGGAGCGGCGGTGGCGGAGGAGGC
GGGAGTCTCCGGGGACGGCCTGATGTCGCGTATGGCCCTGGAGTCCGTGG
GGCTGCTGGTGGAAGGCCTGGCCGGGCAGAACAAGCAGGCCTCCCCGGCC
GTCCTCGCCCACCTGTGCGGTTGTCTCGTCCACATGCTTGACTGCTGCCT
TCCGGACTCGTTCGGCCTGGAGGGGCGCGCTGCGGTGCACGGCGCCAACG
GGGACGAACACGCGGCGGGCGCTGGGGTGGACGGCACGGGTGGTAGCGGC
GCTGCTTCGCCGGGGGGCGGCAGTGTGCGCGTCTTGTTTGACGGCGGCGG
CGGCGGCGGCGACGCTGCCGCCGGCAGACAAGACGCGGCGGGAAAGGCGA
GCGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5343:386..3889+

>mRNA_L-elsbetiae_contig5343.13523.1 ID=mRNA_L-elsbetiae_contig5343.13523.1|Name=mRNA_L-elsbetiae_contig5343.13523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3864bp|location=Sequence derived from alignment at L-elsbetiae_contig5343:386..3889+ (Laminarionema elsbetiae ELsaHSoW15)
CGGACCGTGCTGGTGAACGCCTCCTCGCAACCCCCCCCCCCAAAAAAAAA
GGTGGTGCAGCCGGCGTGCTTGATCCTGGAGCGGCTGGCGGGCGAGACCT
TTCCGCTCGTGCAGTACGACTTTGTCGACCTGGTCTACACCCTGTTGGAG
ATGGCTGCTTCGAGCGGACCGTGCTGGTGAACGCCTCCTCGCAACCCCCC
CCCCCAAAAAAAAAGGTGGTGCAGCCGGCGTGCTTGATCCTGGAGCGGCT
GGCGGGCGAGACCTTTCCGCTCGTGCAGTACGACTTTGTCGACCTGGTCT
ACACCCTGTTGGAGATGGCTGCTTCGAGGTTTCTGGATGTCAGCCTGGTG
TGCATCGGGCACCTGCGGCTGTGCGCCCGGCATCTGGCCGAGGGCGACGT
CGACGTGGCGCTCCAGGTTTCTGGATGTCAGCCTGGTGTGCATCGGGCAC
CTGCGGCTGTGCGCCCGGCATCTGGCCGAGGGCGACGTCGACGTGGCGCT
CCAGCGCCCCCTCCCCGAGGTGACCGTCTCCAACACGGGCCAGCTCCCGC
CGGAGGTCCTGAACGCCGTGAGAGCCGACCACGGTGGCGGCAGCGGCAGC
AGCAGCGGCAGCGGCAGCGGCAGTGGCAGCGGCAGTGGCAGCGACCGGGA
GGACGAGGACGGCAGCACCGGGAGGGAGAGGGAAGCTGCACGGAGCGACG
CCGTCGGCCACCTCACCCTAGACCTCGCGACGCTCGGCTCGCCCATCCTC
GGCGAGGAAGGGGGAGAGGAAGAGGGGGGCGAGAAGAGGCCGGGGACAGC
GGCGGCTGTCGACGCAGGCGCGGCAGCTACGCGAGAGAGTGGGCATCGGA
TAGGGCGGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAACGAAAAC
AAGGCCGGCAGGATTTCGCTTACGTCGGCGGCGGCGACAGCGGCGACAGG
GTGGGGAATCGGAGCGGTGAGGCACACTCGTCTTGCCCTCCAGCTTTGGT
GGCCGCTGCTGGCCGGCCTGGCCGGAGGGGCGGGGGATCCGCGGCTGGAC
TGTCGCGCGGCGGCCCTCTCGACCCTCCAGGACGTCTTGAAGCGCCCCCT
CCCCGAGGTGACCGTCTCCAACACGGGCCAGCTCCCGCCGGAGGTCCTGA
ACGCCGTGAGAGCCGACCACGGTGGCGGCAGCGGCAGCAGCAGCGGCAGC
GGCAGCGGCAGTGGCAGCGGCAGTGGCAGCGACCGGGAGGACGAGGACGG
CAGCACCGGGAGGGAGAGGGAAGCTGCACGGAGCGACGCCGTCGGCCACC
TCACCCTAGACCTCGCGACGCTCGGCTCGCCCATCCTCGGCGAGGAAGGG
GGAGAGGAAGAGGGGGGCGAGAAGAGGCCGGGGACAGCGGCGGCTGTCGA
CGCAGGCGCGGCAGCTACGCGAGAGAGTGGGCATCGGATAGGGCGGCAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGAACGAAAACAAGGCCGGCAGG
ATTTCGCTTACGTCGGCGGCGGCGACAGCGGCGACAGGGTGGGGAATCGG
AGCGGTGAGGCACACTCGTCTTGCCCTCCAGCTTTGGTGGCCGCTGCTGG
CCGGCCTGGCCGGAGGGGCGGGGGATCCGCGGCTGGACTGTCGCGCGGCG
GCCCTCTCGACCCTCCAGGACGTCTTGAAGGAGTTCGGGTCTGCCCCGGA
GTTCTCGCCTCGCGTGTGGCCCTTCCTCTTGACGCGCATCCTCCTGCCGG
TTTCGCGGCACGTGGTGAGAACGACGCCGTCGGTGCCTCCGCCGGCCCTG
CCGCCATCTCTGCTGGGATCGAACGCGCCACCGCCGTCGACACCCTCCCG
CCACAGCCGCCACCGTCGCGCGCAGTCGGCGTTGTCGATGACGGCACCCT
CGGCGCTGCCGAGCCCGAGGAGCGGGCCGTTTCGGCTCCCTCTGGCTAGT
GTCGGTGTCGGGGATACGGAGGCGCCGGGCCCCGCCAGCGCCGGTGTGTT
TCCGCTCGACGTCGACTCGTGGGTGCACACGACGGCGCCGCAGCTGTTCC
GTGCGGCCGTGTCTGTCGTCGCGAGCAACGCCCAGACCGCCGCGCCGCTG
GGGGTTCCCACCCTTTTGGCGTTTTTCGAGCCGCACATTTGCTGCCGGCG
GCGGCGGCGGCGGCGACACGACGGCGAGATCGGTGAGAGCGGCGGCGGCC
GGAGCCGTGCCGGCAGCCTCAGCAGCAACCTCAGCTGTCCTCGAGCAGAT
CGGCGAGAAGCCGGGAGCACCGCTGCTGCGGCCAAGAAGGAGTCGGAGAG
GCAGACGGGGCCGGACGACGGCAGAGGCCCGGGCAGTGGAGACAACGGCG
ACCCCGGACGGTATCCGGAAGGGGAGGTGGGCGCAGCGGTAGCGGCCGGA
GCGGCGGTGGCGGAGGAGGCGGGAGTCTCCGGGGACGGCCTGATGTCGCG
TATGGCCCTGGAGTCCGTGGGGCTGCTGGTGGAAGGCCTGGCCGGGCAGA
ACAAGCAGGCCTCCCCGGCCGTCCTCGCCCACCTGTGCGGTTGTCTCGTC
CACATGCTTGACTGCTGCCTTCCGGACTCGTTCGGCCTGGAGGGGCGCGC
TGCGGTGCACGGCGCCAACGGGGACGAACACGCGGCGGGCGCTGGGGTGG
ACGGCACGGGTGGTAGCGGCGCTGCTTCGCCGGGGGGCGGCAGTGTGCGC
GTCTTGTTTGACGGCGGCGGCGGCGGCGGCGACGCTGCCGCCGGCAGACA
AGACGCGGCGGGAAAGGCGAGCGAGTTCGGGTCTGCCCCGGAGTTCTCGC
CTCGCGTGTGGCCCTTCCTCTTGACGCGCATCCTCCTGCCGGTTTCGCGG
CACGTGGTGAGAACGACGCCGTCGGTGCCTCCGCCGGCCCTGCCGCCATC
TCTGCTGGGATCGAACGCGCCACCGCCGTCGACACCCTCCCGCCACAGCC
GCCACCGTCGCGCGCAGTCGGCGTTGTCGATGACGGCACCCTCGGCGCTG
CCGAGCCCGAGGAGCGGGCCGTTTCGGCTCCCTCTGGCTAGTGTCGGTGT
CGGGGATACGGAGGCGCCGGGCCCCGCCAGCGCCGGTGTGTTTCCGCTCG
ACGTCGACTCGTGGGTGCACACGACGGCGCCGCAGCTGTTCCGTGCGGCC
GTGTCTGTCGTCGCGAGCAACGCCCAGACCGCCGCGCCGCTGGGGGTTCC
CACCCTTTTGGCGTTTTTCGAGCCGCACATTTGCTGCCGGCGGCGGCGGC
GGCGGCGACACGACGGCGAGATCGGTGAGAGCGGCGGCGGCCGGAGCCGT
GCCGGCAGCCTCAGCAGCAACCTCAGCTGTCCTCGAGCAGATCGGCGAGA
AGCCGGGAGCACCGCTGCTGCGGCCAAGAAGGAGTCGGAGAGGCAGACGG
GGCCGGACGACGGCAGAGGCCCGGGCAGTGGAGACAACGGCGACCCCGGA
CGGTATCCGGAAGGGGAGGTGGGCGCAGCGGTAGCGGCCGGAGCGGCGGT
GGCGGAGGAGGCGGGAGTCTCCGGGGACGGCCTGATGTCGCGTATGGCCC
TGGAGTCCGTGGGGCTGCTGGTGGAAGGCCTGGCCGGGCAGAACAAGCAG
GCCTCCCCGGCCGTCCTCGCCCACCTGTGCGGTTGTCTCGTCCACATGCT
TGACTGCTGCCTTCCGGACTCGTTCGGCCTGGAGGGGCGCGCTGCGGTGC
ACGGCGCCAACGGGGACGAACACGCGGCGGGCGCTGGGGTGGACGGCACG
GGTGGTAGCGGCGCTGCTTCGCCGGGGGGCGGCAGTGTGCGCGTCTTGTT
TGACGGCGGCGGCGGCGGCGGCGACGCTGCCGCCGGCAGACAAGACGCGG
CGGGAAAGGCGAGC
back to top