mRNA_L-elsbetiae_contig534.13517.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig534.13517.1
Unique NamemRNA_L-elsbetiae_contig534.13517.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig534.13517.1 vs. uniprot
Match: D7G393_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G393_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 8.080e-33
Identity = 66/85 (77.65%), Postives = 75/85 (88.24%), Query Frame = 1
Query:    4 SRGDADRARTMVYNIVLDLLSSRKNRRWQEAFSLLETMQERGVTADMYTLNSVLKACGSSGQVELLLALLREVRSSNRGTDDSRS 258
            SR D +RART VYNIV+D+LSSRK+ RWQEAF LLETMQERGVT D+YTLNS LKACGS+GQV+LLLALLRE+RSS+R  DDS S
Sbjct:  127 SRDDGERARTRVYNIVMDILSSRKSSRWQEAFLLLETMQERGVTTDLYTLNSTLKACGSAGQVKLLLALLREMRSSSRSNDDSGS 211          
BLAST of mRNA_L-elsbetiae_contig534.13517.1 vs. uniprot
Match: A0A6H5KYW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW8_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.540e-31
Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 1
Query:    4 SRGDADRARTMVYNIVLDLLSSRKNRRWQEAFSLLETMQERGVTADMYTLNSVLKACGSSGQVELLLALLREVRSSNRGTDDSRS 258
            SR D +RART VYNIV+D+LSSR + RWQEAF LLETMQERGVT D+YTLNS LKACGS+GQVELLLALL E+RSS+R  DDS S
Sbjct:  219 SRDDGERARTRVYNIVMDILSSRNSSRWQEAFMLLETMQERGVTTDLYTLNSALKACGSAGQVELLLALLTEMRSSSRSNDDSGS 303          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig534.13517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G393_ECTSI8.080e-3377.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYW8_9PHAE2.540e-3176.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig534contigL-elsbetiae_contig534:30269..34371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue9.4e-28
Seed eggNOG ortholog2880.D7G393
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size305
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig534.13517.1prot_L-elsbetiae_contig534.13517.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig534 30269..34370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.67295-CDS-L-elsbetiae_contig534:30268..303451622816554.67295-CDS-L-elsbetiae_contig534:30268..30345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 30269..30345 +
1691683643.8378491-CDS-L-elsbetiae_contig534:30268..303451691683643.8378491-CDS-L-elsbetiae_contig534:30268..30345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 30269..30345 +
1622816554.6838288-CDS-L-elsbetiae_contig534:31729..318481622816554.6838288-CDS-L-elsbetiae_contig534:31729..31848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 31730..31848 +
1691683643.8481076-CDS-L-elsbetiae_contig534:31729..318481691683643.8481076-CDS-L-elsbetiae_contig534:31729..31848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 31730..31848 +
1622816554.6949983-CDS-L-elsbetiae_contig534:34263..343701622816554.6949983-CDS-L-elsbetiae_contig534:34263..34370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 34264..34370 +
1691683643.8573632-CDS-L-elsbetiae_contig534:34263..343701691683643.8573632-CDS-L-elsbetiae_contig534:34263..34370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 34264..34370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig534.13517.1

>prot_L-elsbetiae_contig534.13517.1 ID=prot_L-elsbetiae_contig534.13517.1|Name=mRNA_L-elsbetiae_contig534.13517.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
TSRGDADRARTMVYNIVLDLLSSRKNRRWQEAFSLLETMQERGVTADMYT
LNSVLKACGSSGQVELLLALLREVRSSNRGTDDSRSSGSNGSSSGSRSGD
G
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mRNA from alignment at L-elsbetiae_contig534:30269..34371+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig534.13517.1 ID=mRNA_L-elsbetiae_contig534.13517.1|Name=mRNA_L-elsbetiae_contig534.13517.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4103bp|location=Sequence derived from alignment at L-elsbetiae_contig534:30269..34371+ (Laminarionema elsbetiae ELsaHSoW15)
ACGTCCAGAGGGGATGCCGACCGCGCCAGGACCATGGTGTACAACATCGT CTTGGACCTTCTGTCGTCACGGAAAAAGTGCGTGCGTGCGTGCGTGCGTG CGTGCGTGCGTGGCTCGTGCGCGGGGTTTTCGATGCGATTGTCGACCCCC CACACTTTGCTCCTGGGTTGGTGGGTGAAGGTGCTGAGGAGCAGTGAAGA AGGAAAGGGAGCAAGTACTGTGCGGGGGTGACGGGGTGATCCAGCCCCCC CCCCCCCCCCCCCCCCGTTCTTGGGCCAGCCCGCCCCCCCGTTTTTTGGC CGAAGGACCCAGTGGAGAGAGAACAAGGGTCAGCATGTGTGCGTGCATCT GTTTTGGCTGGGGTTTTTTAGCGAGGAGCGCGCGCGCTTCTTTGCGCCGC GTTTGTTTCCGCCTGCGGCCACACAACCCTAATGCTGGATTTATTTACCC TTGGGCCTTCTTGGTCGCGGCCAAGAAGCGCTGGCTGTGTCTTTCCTTTT TATTGATGTATACAAAATCAGCAGTCCACTTACGTACGTCCAGTCTGCGA AAAACGGAAAGAGGCGTTCCAGTGCGAAAAATAGAAAGAGGCGTTCGAGG GGGACTGTTGTAGGCATACGAAATAACCCTCCCCCCTCTCCATCATGAAT ATATAAAAAAACTATATATGTGTGTGTGTGTGTCTGTGTGTCCTTCCCAT TTATGTTGGCGACAGTCCCCCCAAGTGGAGACGTGTTCTACACCTTGCAG TGTACTTAGAGGTAGTACTCGCCCAAAATCCGTAATCCCCATGTATATAC AAAAAAAAAAAAAAAAAAGCAACAGAATCTAGGCCGGTGGGGGAAAGTCA AATTGAGAGGGGTTTGGTGTTTCGTTTTTTTTNNNNNNNNNNGGAGAAGT TTTTAAAACTTTACAGGGTAATTAAAGGTAATACACGCCAAAAATCAAAA AACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGCAACAGTATCTAGT CCGTTGGTGAAAATTCAAATTCAGAGGAGTCTGTCGCAGCGTAAACGTGA GCGCATCAAGCATTGGCATAGGGTAAAAGCAGTGGTGGTTTTGTACGTGG TGTTTGTTTTGATCATTTTTCTTTCTTTTCGCCCTTTCGCCGTATATTTG GACGCTTTGTGCCTTGTTGAGGTCAGGGTGTCATCTTGCGGGGATTATTG GCGAAGGCTCTTCCTGAGTCCGCGATCTGAACGAGGACGTTTTCCGACTC CAATGCCATCGGATGTTTGTTCCGCGCGTTGCATGTCATCTACATGTATG TCACCCCGCTAGTGATGCCGCTAAATTTTATGAGAACCAACAACGACGAC TAGAAGAGCAACGATCGCAACAACAACAACACTAACAACAACAACAACAA CAACAACAACAGCAACAACGAACCACGACCACCCCCCCCACCCCCTCTGC CAAATCGACAGCCGTAGGTGGCAGGAGGCGTTCTCTCTTCTGGAGACCAT GCAGGAGCGCGGGGTGACGGCCGATATGTACACCCTCAACTCGGTTCTCA AGGCTTGCGGCTCGTCTGGACAGGTGGAATGTGAGCGAGCGGTGGCTTGC GACGAGAGGCAGGGCGGGCCGGGCCCTAAAGCAAAGTTTTTGACGCACAG AAAAAGCGTGTTTCGTCGAGCCGTATTTTGGTGGTTAGGCCACTTAAGAC ACACGGTAAGAGGATACTCGGGTAAAAGGTTACTCTGGTCAAAAGGTTAC CGTAGGTGACACAAGATACCACACCCCCTGGACCGAATTTCAGAGCTCGA TTACTCCGTAACGAAGAAGGTGCCAGCACCAAACTACACATTTTCGGACA GCCCTTGACTAGATCTTTCCAACGCCACCCCTTTCGGCACTGGCACTCTT CTTGCGGGGGAGGAATCGAGCTTTGAAAAGCTGTCCAAGGGGTGTGGTAT CTTGTGTCACTTACGGTACTCTGGTGAAAAGGTACTCTGGTAAGAGGTTA TAACCTCTTACCAGAGTGGGAGCTTGCCTCCTCAACAGTATGCCGTACTT GTGCGGGCTATCTATCGCACACCACCCCCTGGACCGAGTTTTAGAGCTCG ATTACCGTAAGCGTGCGAAGGTTCGCACCCCCGTGTTATAGAAGCTTGCC TCCTCAACAGTATGCCGTACTTGTGCGGGCTATCTATCGCACACCACCCC CTGGAACGAGTTTTAGAGCTCGATTACCGTAAGCGTGCGAAGGTTCGCAC CCCCGTGTTATAGAAAAACGCTAACACGGGGGTGCGAACCTTCGTACACC TACGGTACTTCGTCGTGAAGAAGGGGTGCGAGAAGCCAAACGAAACGTTT TCGATCAGCTATTGGTTTATCGACGTGATCTTTTTCCAACGCCACCCTTT TCGGCACTGACGGTCTTCTTGCCCATGGACCAATCGAGCTTTGCAGAATC GGTCCAGGGGGGGTGTAATCTTGTGCCACCTACGGTATACGCCTTACACG GACGGGCCCTTCCTTGCTACCTCGTTTGATTGAGATTCGGGGCGGGGGTG GTGGTGGTGGTTGGGGGGGGGGGGGGTTTTATCTCACCGCCGCCCCCCCT GGGGGGCCTGAATGGTAGGGGGGGGGCGGTCCTATCAAAAAAACCATTTT CTCNNNNNNNNNNGGGGGGGGGTTCCTTTTGCCCCCCCCGGGGGTCGCCC CCGCGCGGGGGCGGCCCCTTTTGTCTCCCTGTGTGGGTGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGTTTTATCTCAAC GACGCGCCCCCTTGTGTGCATGAATAGTAGGGAGGGAGTAGTTCTATAAA AAAAAACATTTTCTCTGCGTAGAGCCTTCGCCCCCTCACCCCCCCACCCC CGTCGCCCCGTCGCCCCGCCACCCCCGTCGCTTTGGAGAGTGGCGACGGG GGAACAAAGTCCCCCTGGTTGCCCCCGCCAGAGCGTGTTTTCCCCTGCAT ATGCGCGAGTGCAAAGTTGCGGGAAGTGGCGCCGGGGGAACAAAGTTCCC TGGTTCCTCCGCGAGAGCTTGTTTTCCTCTGCATGTGTGCGTGTGCGTGT GCTTACGCGTGTGCGTGTGTGTGCGTGTGCTTGTGTTTGTGCTTGTGCTT TGTCCTTTGGCGGGAGGGGGTGCCGGAAGTTCCCAGAGATCACGCATGTC CGGCACTCTGTCCAGCCGCCCCGTTGCCGTGCGCAGTTCGCTTGCGTGTG AAGAGAGCGACAGCGTGGCTTTTTGTCACCTCCTGTCCAAGTCAATATTC TGGAGAGAATGTGCCCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTTTT ATCTTCAAGCTTGGCGACCGGATGCGCTGCGCCATCGGCATGTTTTCCAG CGCAAGCCACTAGGGCACACAAATTTGTCCCCGCGGTGTTTTGTGGTGGA GGCACGGCCCGGGAAAAAAGTGGCTCGTGCGATAAAAAATTTAGGCAAGC ACCGCAGAAGGGGGGAGTGGGGGCCTCGGGGAGAGGAACCCTTCTGTGTG ACCACGGTTCAGTACCCTGGCAAGACGCACGCCTCGTGGCGGGGAACCCG TCGAGCGAGCACTGGAAATAAACGTGGAGAAAACAAAAATAAACATAGAA GTATGTACCAGCCATTTAGCCTGACTGGCTCCGCATGGTTGGCGTCCTCA GCGCGCTGCTATACGGCGTGAAAAAGCGACCCCGCCTAGGGCTACAAGGC TAAGGTTAGAGAAGCGACAGGTCCTAGGGTGACAGCGGGGTTTGGGGTCA GACAATACGATGCCTCCCGGGGTTAGGGCTGGGGTTAGGGTTAAACGGTT AGGGGTTGGGGTCAAGACCGGCGACATCGCCTGCGGGCGCATCACCACCC CGGCCTTTCCGTCGCTTTTGTGTTCTAAGCCTTGTGCTCTCCCCTCCCAC GCGAACCCCGCCGCAAACACACCGACTCCTCTCCGCGTCAAAAAGTGCTG CTCGCTCTCCTGAGGGAGGTGCGCTCAAGCAACAGGGGCACCGACGATAG CCGCAGCAGCGGCAGCAACGGCAGCAGCAGCGGCAGCCGCAGCGGCGACG GAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig534:30269..34371+

>mRNA_L-elsbetiae_contig534.13517.1 ID=mRNA_L-elsbetiae_contig534.13517.1|Name=mRNA_L-elsbetiae_contig534.13517.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig534:30269..34371+ (Laminarionema elsbetiae ELsaHSoW15)
ACGTCCAGAGGGGATGCCGACCGCGCCAGGACCATGGTGTACAACATCGT
CTTGGACCTTCTGTCGTCACGGAAAAAACGTCCAGAGGGGATGCCGACCG
CGCCAGGACCATGGTGTACAACATCGTCTTGGACCTTCTGTCGTCACGGA
AAAACCGTAGGTGGCAGGAGGCGTTCTCTCTTCTGGAGACCATGCAGGAG
CGCGGGGTGACGGCCGATATGTACACCCTCAACTCGGTTCTCAAGGCTTG
CGGCTCGTCTGGACAGGTGGAATCCGTAGGTGGCAGGAGGCGTTCTCTCT
TCTGGAGACCATGCAGGAGCGCGGGGTGACGGCCGATATGTACACCCTCA
ACTCGGTTCTCAAGGCTTGCGGCTCGTCTGGACAGGTGGAATTGCTGCTC
GCTCTCCTGAGGGAGGTGCGCTCAAGCAACAGGGGCACCGACGATAGCCG
CAGCAGCGGCAGCAACGGCAGCAGCAGCGGCAGCCGCAGCGGCGACGGAT
GCTGCTCGCTCTCCTGAGGGAGGTGCGCTCAAGCAACAGGGGCACCGACG
ATAGCCGCAGCAGCGGCAGCAACGGCAGCAGCAGCGGCAGCCGCAGCGGC
GACGGA
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