mRNA_L-elsbetiae_contig534.13517.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig534.13517.1
Unique NamemRNA_L-elsbetiae_contig534.13517.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig534.13517.1 vs. uniprot
Match: D7G393_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G393_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 8.080e-33
Identity = 66/85 (77.65%), Postives = 75/85 (88.24%), Query Frame = 1 
Query:    4 SRGDADRARTMVYNIVLDLLSSRKNRRWQEAFSLLETMQERGVTADMYTLNSVLKACGSSGQVELLLALLREVRSSNRGTDDSRS 258
            SR D +RART VYNIV+D+LSSRK+ RWQEAF LLETMQERGVT D+YTLNS LKACGS+GQV+LLLALLRE+RSS+R  DDS S
Sbjct:  127 SRDDGERARTRVYNIVMDILSSRKSSRWQEAFLLLETMQERGVTTDLYTLNSTLKACGSAGQVKLLLALLREMRSSSRSNDDSGS 211
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BLAST of mRNA_L-elsbetiae_contig534.13517.1 vs. uniprot
Match: A0A6H5KYW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW8_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.540e-31
Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:    4 SRGDADRARTMVYNIVLDLLSSRKNRRWQEAFSLLETMQERGVTADMYTLNSVLKACGSSGQVELLLALLREVRSSNRGTDDSRS 258
            SR D +RART VYNIV+D+LSSR + RWQEAF LLETMQERGVT D+YTLNS LKACGS+GQVELLLALL E+RSS+R  DDS S
Sbjct:  219 SRDDGERARTRVYNIVMDILSSRNSSRWQEAFMLLETMQERGVTTDLYTLNSALKACGSAGQVELLLALLTEMRSSSRSNDDSGS 303
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig534.13517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G393_ECTSI8.080e-3377.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYW8_9PHAE2.540e-3176.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig534contigL-elsbetiae_contig534:30269..34371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue9.4e-28
Seed eggNOG ortholog2880.D7G393
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size305
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig534.13517.1prot_L-elsbetiae_contig534.13517.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig534 30269..34370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.67295-CDS-L-elsbetiae_contig534:30268..303451622816554.67295-CDS-L-elsbetiae_contig534:30268..30345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 30269..30345 +
1691683643.8378491-CDS-L-elsbetiae_contig534:30268..303451691683643.8378491-CDS-L-elsbetiae_contig534:30268..30345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 30269..30345 +
1622816554.6838288-CDS-L-elsbetiae_contig534:31729..318481622816554.6838288-CDS-L-elsbetiae_contig534:31729..31848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 31730..31848 +
1691683643.8481076-CDS-L-elsbetiae_contig534:31729..318481691683643.8481076-CDS-L-elsbetiae_contig534:31729..31848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 31730..31848 +
1622816554.6949983-CDS-L-elsbetiae_contig534:34263..343701622816554.6949983-CDS-L-elsbetiae_contig534:34263..34370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 34264..34370 +
1691683643.8573632-CDS-L-elsbetiae_contig534:34263..343701691683643.8573632-CDS-L-elsbetiae_contig534:34263..34370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 34264..34370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig534.13517.1

>prot_L-elsbetiae_contig534.13517.1 ID=prot_L-elsbetiae_contig534.13517.1|Name=mRNA_L-elsbetiae_contig534.13517.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
TSRGDADRARTMVYNIVLDLLSSRKNRRWQEAFSLLETMQERGVTADMYT
LNSVLKACGSSGQVELLLALLREVRSSNRGTDDSRSSGSNGSSSGSRSGD
G
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mRNA from alignment at L-elsbetiae_contig534:30269..34371+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig534.13517.1 ID=mRNA_L-elsbetiae_contig534.13517.1|Name=mRNA_L-elsbetiae_contig534.13517.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4103bp|location=Sequence derived from alignment at L-elsbetiae_contig534:30269..34371+ (Laminarionema elsbetiae ELsaHSoW15)
ACGTCCAGAGGGGATGCCGACCGCGCCAGGACCATGGTGTACAACATCGT
CTTGGACCTTCTGTCGTCACGGAAAAAGTGCGTGCGTGCGTGCGTGCGTG
CGTGCGTGCGTGGCTCGTGCGCGGGGTTTTCGATGCGATTGTCGACCCCC
CACACTTTGCTCCTGGGTTGGTGGGTGAAGGTGCTGAGGAGCAGTGAAGA
AGGAAAGGGAGCAAGTACTGTGCGGGGGTGACGGGGTGATCCAGCCCCCC
CCCCCCCCCCCCCCCCGTTCTTGGGCCAGCCCGCCCCCCCGTTTTTTGGC
CGAAGGACCCAGTGGAGAGAGAACAAGGGTCAGCATGTGTGCGTGCATCT
GTTTTGGCTGGGGTTTTTTAGCGAGGAGCGCGCGCGCTTCTTTGCGCCGC
GTTTGTTTCCGCCTGCGGCCACACAACCCTAATGCTGGATTTATTTACCC
TTGGGCCTTCTTGGTCGCGGCCAAGAAGCGCTGGCTGTGTCTTTCCTTTT
TATTGATGTATACAAAATCAGCAGTCCACTTACGTACGTCCAGTCTGCGA
AAAACGGAAAGAGGCGTTCCAGTGCGAAAAATAGAAAGAGGCGTTCGAGG
GGGACTGTTGTAGGCATACGAAATAACCCTCCCCCCTCTCCATCATGAAT
ATATAAAAAAACTATATATGTGTGTGTGTGTGTCTGTGTGTCCTTCCCAT
TTATGTTGGCGACAGTCCCCCCAAGTGGAGACGTGTTCTACACCTTGCAG
TGTACTTAGAGGTAGTACTCGCCCAAAATCCGTAATCCCCATGTATATAC
AAAAAAAAAAAAAAAAAAGCAACAGAATCTAGGCCGGTGGGGGAAAGTCA
AATTGAGAGGGGTTTGGTGTTTCGTTTTTTTTNNNNNNNNNNGGAGAAGT
TTTTAAAACTTTACAGGGTAATTAAAGGTAATACACGCCAAAAATCAAAA
AACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGCAACAGTATCTAGT
CCGTTGGTGAAAATTCAAATTCAGAGGAGTCTGTCGCAGCGTAAACGTGA
GCGCATCAAGCATTGGCATAGGGTAAAAGCAGTGGTGGTTTTGTACGTGG
TGTTTGTTTTGATCATTTTTCTTTCTTTTCGCCCTTTCGCCGTATATTTG
GACGCTTTGTGCCTTGTTGAGGTCAGGGTGTCATCTTGCGGGGATTATTG
GCGAAGGCTCTTCCTGAGTCCGCGATCTGAACGAGGACGTTTTCCGACTC
CAATGCCATCGGATGTTTGTTCCGCGCGTTGCATGTCATCTACATGTATG
TCACCCCGCTAGTGATGCCGCTAAATTTTATGAGAACCAACAACGACGAC
TAGAAGAGCAACGATCGCAACAACAACAACACTAACAACAACAACAACAA
CAACAACAACAGCAACAACGAACCACGACCACCCCCCCCACCCCCTCTGC
CAAATCGACAGCCGTAGGTGGCAGGAGGCGTTCTCTCTTCTGGAGACCAT
GCAGGAGCGCGGGGTGACGGCCGATATGTACACCCTCAACTCGGTTCTCA
AGGCTTGCGGCTCGTCTGGACAGGTGGAATGTGAGCGAGCGGTGGCTTGC
GACGAGAGGCAGGGCGGGCCGGGCCCTAAAGCAAAGTTTTTGACGCACAG
AAAAAGCGTGTTTCGTCGAGCCGTATTTTGGTGGTTAGGCCACTTAAGAC
ACACGGTAAGAGGATACTCGGGTAAAAGGTTACTCTGGTCAAAAGGTTAC
CGTAGGTGACACAAGATACCACACCCCCTGGACCGAATTTCAGAGCTCGA
TTACTCCGTAACGAAGAAGGTGCCAGCACCAAACTACACATTTTCGGACA
GCCCTTGACTAGATCTTTCCAACGCCACCCCTTTCGGCACTGGCACTCTT
CTTGCGGGGGAGGAATCGAGCTTTGAAAAGCTGTCCAAGGGGTGTGGTAT
CTTGTGTCACTTACGGTACTCTGGTGAAAAGGTACTCTGGTAAGAGGTTA
TAACCTCTTACCAGAGTGGGAGCTTGCCTCCTCAACAGTATGCCGTACTT
GTGCGGGCTATCTATCGCACACCACCCCCTGGACCGAGTTTTAGAGCTCG
ATTACCGTAAGCGTGCGAAGGTTCGCACCCCCGTGTTATAGAAGCTTGCC
TCCTCAACAGTATGCCGTACTTGTGCGGGCTATCTATCGCACACCACCCC
CTGGAACGAGTTTTAGAGCTCGATTACCGTAAGCGTGCGAAGGTTCGCAC
CCCCGTGTTATAGAAAAACGCTAACACGGGGGTGCGAACCTTCGTACACC
TACGGTACTTCGTCGTGAAGAAGGGGTGCGAGAAGCCAAACGAAACGTTT
TCGATCAGCTATTGGTTTATCGACGTGATCTTTTTCCAACGCCACCCTTT
TCGGCACTGACGGTCTTCTTGCCCATGGACCAATCGAGCTTTGCAGAATC
GGTCCAGGGGGGGTGTAATCTTGTGCCACCTACGGTATACGCCTTACACG
GACGGGCCCTTCCTTGCTACCTCGTTTGATTGAGATTCGGGGCGGGGGTG
GTGGTGGTGGTTGGGGGGGGGGGGGGTTTTATCTCACCGCCGCCCCCCCT
GGGGGGCCTGAATGGTAGGGGGGGGGCGGTCCTATCAAAAAAACCATTTT
CTCNNNNNNNNNNGGGGGGGGGTTCCTTTTGCCCCCCCCGGGGGTCGCCC
CCGCGCGGGGGCGGCCCCTTTTGTCTCCCTGTGTGGGTGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGTTTTATCTCAAC
GACGCGCCCCCTTGTGTGCATGAATAGTAGGGAGGGAGTAGTTCTATAAA
AAAAAACATTTTCTCTGCGTAGAGCCTTCGCCCCCTCACCCCCCCACCCC
CGTCGCCCCGTCGCCCCGCCACCCCCGTCGCTTTGGAGAGTGGCGACGGG
GGAACAAAGTCCCCCTGGTTGCCCCCGCCAGAGCGTGTTTTCCCCTGCAT
ATGCGCGAGTGCAAAGTTGCGGGAAGTGGCGCCGGGGGAACAAAGTTCCC
TGGTTCCTCCGCGAGAGCTTGTTTTCCTCTGCATGTGTGCGTGTGCGTGT
GCTTACGCGTGTGCGTGTGTGTGCGTGTGCTTGTGTTTGTGCTTGTGCTT
TGTCCTTTGGCGGGAGGGGGTGCCGGAAGTTCCCAGAGATCACGCATGTC
CGGCACTCTGTCCAGCCGCCCCGTTGCCGTGCGCAGTTCGCTTGCGTGTG
AAGAGAGCGACAGCGTGGCTTTTTGTCACCTCCTGTCCAAGTCAATATTC
TGGAGAGAATGTGCCCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTTTT
ATCTTCAAGCTTGGCGACCGGATGCGCTGCGCCATCGGCATGTTTTCCAG
CGCAAGCCACTAGGGCACACAAATTTGTCCCCGCGGTGTTTTGTGGTGGA
GGCACGGCCCGGGAAAAAAGTGGCTCGTGCGATAAAAAATTTAGGCAAGC
ACCGCAGAAGGGGGGAGTGGGGGCCTCGGGGAGAGGAACCCTTCTGTGTG
ACCACGGTTCAGTACCCTGGCAAGACGCACGCCTCGTGGCGGGGAACCCG
TCGAGCGAGCACTGGAAATAAACGTGGAGAAAACAAAAATAAACATAGAA
GTATGTACCAGCCATTTAGCCTGACTGGCTCCGCATGGTTGGCGTCCTCA
GCGCGCTGCTATACGGCGTGAAAAAGCGACCCCGCCTAGGGCTACAAGGC
TAAGGTTAGAGAAGCGACAGGTCCTAGGGTGACAGCGGGGTTTGGGGTCA
GACAATACGATGCCTCCCGGGGTTAGGGCTGGGGTTAGGGTTAAACGGTT
AGGGGTTGGGGTCAAGACCGGCGACATCGCCTGCGGGCGCATCACCACCC
CGGCCTTTCCGTCGCTTTTGTGTTCTAAGCCTTGTGCTCTCCCCTCCCAC
GCGAACCCCGCCGCAAACACACCGACTCCTCTCCGCGTCAAAAAGTGCTG
CTCGCTCTCCTGAGGGAGGTGCGCTCAAGCAACAGGGGCACCGACGATAG
CCGCAGCAGCGGCAGCAACGGCAGCAGCAGCGGCAGCCGCAGCGGCGACG
GAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig534:30269..34371+

>mRNA_L-elsbetiae_contig534.13517.1 ID=mRNA_L-elsbetiae_contig534.13517.1|Name=mRNA_L-elsbetiae_contig534.13517.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig534:30269..34371+ (Laminarionema elsbetiae ELsaHSoW15)
ACGTCCAGAGGGGATGCCGACCGCGCCAGGACCATGGTGTACAACATCGT
CTTGGACCTTCTGTCGTCACGGAAAAAACGTCCAGAGGGGATGCCGACCG
CGCCAGGACCATGGTGTACAACATCGTCTTGGACCTTCTGTCGTCACGGA
AAAACCGTAGGTGGCAGGAGGCGTTCTCTCTTCTGGAGACCATGCAGGAG
CGCGGGGTGACGGCCGATATGTACACCCTCAACTCGGTTCTCAAGGCTTG
CGGCTCGTCTGGACAGGTGGAATCCGTAGGTGGCAGGAGGCGTTCTCTCT
TCTGGAGACCATGCAGGAGCGCGGGGTGACGGCCGATATGTACACCCTCA
ACTCGGTTCTCAAGGCTTGCGGCTCGTCTGGACAGGTGGAATTGCTGCTC
GCTCTCCTGAGGGAGGTGCGCTCAAGCAACAGGGGCACCGACGATAGCCG
CAGCAGCGGCAGCAACGGCAGCAGCAGCGGCAGCCGCAGCGGCGACGGAT
GCTGCTCGCTCTCCTGAGGGAGGTGCGCTCAAGCAACAGGGGCACCGACG
ATAGCCGCAGCAGCGGCAGCAACGGCAGCAGCAGCGGCAGCCGCAGCGGC
GACGGA
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