mRNA_L-elsbetiae_contig534.13515.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig534.13515.1
Unique NamemRNA_L-elsbetiae_contig534.13515.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match: A0A6H5L8T9_9PHAE (Protein YIPF n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8T9_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 2.270e-102
Identity = 179/250 (71.60%), Postives = 194/250 (77.60%), Query Frame = 3
Query:   27 ESKMMATEE---AGWD-----EGEEPLNGRAAGAVATKAGRGPPPP-QKISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGMTSDASAGEFSEVSTSAYCVLAYLAVGSAGLWAFFRAHDVPLSSSEALSVYGYSLTPFLAAAPLCLFSWPFRSSGLAMASLLAAIFVLRSSWPRLVEHMPEKSKGLLLAAVATYHVFSFLLLTVV 749
            E KMMAT E   AGWD      G+  L               PPPP  KISMCGLLS+Q+YQPYFDV+TSEVK +LLQA WP+RKT+S FL EG+SS+  DLYGPVWV ATLIFL+SVA NARR MT DAS GEF +VSTSAY VLAYLA+G+ GLWAFFR H VPLS +EALSVYGYSLTPFLAAAPLCL SWPFRS GLA ASL+AAIFVLRSSWPRL EHMPEKS  LLL AVATYHV  FLLLTVV
Sbjct:   46 ELKMMATVERDPAGWDPEDSQSGQNLLGKNGGXXXXXXXXXXPPPPGPKISMCGLLSLQYYQPYFDVDTSEVKTKLLQAIWPMRKTAS-FLGEGDSSK-VDLYGPVWVPATLIFLLSVAVNARRAMTDDASLGEFDDVSTSAYSVLAYLAIGTGGLWAFFRTHGVPLSFAEALSVYGYSLTPFLAAAPLCLLSWPFRSCGLAAASLVAAIFVLRSSWPRLQEHMPEKSMVLLLTAVATYHVLWFLLLTVV 293          
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match: M4B6U3_HYAAE (Protein YIPF n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6U3_HYAAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.630e-18
Identity = 74/215 (34.42%), Postives = 114/215 (53.02%), Query Frame = 3
Query:  108 ATKAGRGPPPPQKISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARR----GMTSDASAGEFSEVSTSAYCVLAYLAVGSAGL-WAFFRAHDVPLSSSEALSVYGYSLTPFLAAAPLCL-----FSWPFRSSGLAMASLLAAIFVLRSSWPRLVEHMPEKSKGLLLAAVATYHV 722
            AT  G    P + +S+CG  S+ FYQPYFDV+TS+V++RL+QA  P+++    F E    S   D YGP+W+S TLIF ++  +N       G   D  A +FS ++ SAY ++    +G   L W   +   VP++    + +YGYS   F+ AA LC+       W      LAMA  L   F+L + W  + EH+ ++    +LA ++  H+
Sbjct:   50 ATFGGDSKQPGRPVSLCGCFSLSFYQPYFDVDTSDVQLRLMQALLPLKR-EPVFAELAVKSP--DAYGPLWLSTTLIFCLASCSNVASFLDYGGNRDEWAYDFSRLA-SAYTLVEIFLLGLPMLIWLVGKYFQVPMTLLFLVCLYGYSSIMFIPAAILCISPIDAMDWVVML--LAMAWSL--FFLLNNLWRVISEHLTKEKMLPVLAVISGTHM 256          
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match: A0A8J2SR10_9STRA (Protein YIPF n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SR10_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.870e-18
Identity = 79/244 (32.38%), Postives = 117/244 (47.95%), Query Frame = 3
Query:   36 MMATEEAGWDEGEEPLNGRAAGAVATKAGRGPPPPQKISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGMTSDASA---GEFSEVSTSAYCVLAYLAVGSAGLWAFF----RAHDVPLSSSEALSVYGYSLTPFLAAAPLCLF---SWPFRSSGLAMASLLAAIFVLRSSWPRLVEHMPEKSKGLLLAAVATYHVFSFLL 737
            M   ++ G  + E+ L G+ AG  A               C  LSV +Y+PYFDV+T EV  RL  A +   +   + L       + D YGP WV+ TL+F ++V ++ R  + ++A      +FS V+ +A  +  Y+A+ +A  WAF     + H  PL+    L V GYSL P+LAAAP C     +WP   +  A  SL    F L+++ P +  H  EK      A  A     +FLL
Sbjct:    1 MRDEDDHGGPDDEDGLLGQNAGGAAP------------GYCACLSVAYYRPYFDVDTDEVAARLRAALFFCNEPFGATLRG-----KPDAYGPWWVATTLVFAVAVTSHVRGLLGAEAGVIYEFDFSAVTFAAATIYGYVALAAATNWAFLNYSLKVHQRPLA---CLCVVGYSLVPYLAAAPACALPYLAWPAVLAACAAQSL----FALKAARPAVEPHPREKVLAFAGATCALNAGLAFLL 220          
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match: A0A8K1CS43_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS43_PYTOL)

HSP 1 Score: 93.2 bits (230), Expect = 1.300e-17
Identity = 64/197 (32.49%), Postives = 105/197 (53.30%), Query Frame = 3
Query:  147 ISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGMTSDASAGE----FSEVSTSAYCVLAYLAVGSAGLWAFFRAHDVPLSSSEALSVYGYSLTPFLAAAPLCLFSWPFRSSGLAMASLLAAI-FVLRSSWPRLVEHMPEKSKGLLLAAVATYHV 722
            + MC   S+ FYQPYFDV+TS+V+ RL++A  P +K S SF E    ++  D YGPVW+S TLIF ++  +N    +  +    E    FS V+++   V  +L      LW   +  ++P+  S  + +YGYS T F+ A  +C+         + + S+  ++ FVL + W  + EH+ ++    LL  +A  H+
Sbjct:   66 MGMCSCFSLAFYQPYFDVDTSDVQERLVRALLPFKK-SPSFNEL--VTKAPDAYGPVWLSTTLIFCLASCSNVASYLDFEGDRKEWSYDFSRVASACTIVEIFLVALPVLLWLVGKYVNIPMRLSSLVCLYGYSTTIFIPATFICIAPIDAVDWVVILLSMSWSLYFVLANLWTAITEHLSKEKMLPLLGFIAASHL 259          
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match: A0A0P1A6N6_PLAHL (Protein YIPF n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6N6_PLAHL)

HSP 1 Score: 89.7 bits (221), Expect = 1.810e-16
Identity = 63/205 (30.73%), Postives = 107/205 (52.20%), Query Frame = 3
Query:  135 PPQKISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGMTSDASAGEFS---EVSTSAYCVLAYLAVG-SAGLWAFFRAHDVPLSSSEALSVYGYSLTPFLAAAPLCL-----FSWPFRSSGLAMASLLAAIFVLRSSWPRLVEHMPEKSKGLLLAAVATYHV 722
            P +   +CG  ++ FYQPYFDV+TS+V+ R+++A  P +K   +F E   + Q  D YGP W+S+TLIF ++  +NA   M  + +A E+S       SAY ++    +G    +W   +   VP++    + +YGYS   F+ AA LC+       W      +  A   +  F+L + W  + EH+ ++    +LA ++  H+
Sbjct:   55 PARPPGLCGCFTLSFYQPYFDVDTSDVQQRIVRALLPFKK-EPAFAEL--ALQSPDAYGPFWLSSTLIFCLASCSNAASFMDYEGNADEWSYDFSRLASAYTLVEIFLLGLPISIWLVGKYFQVPMTLLFLVCLYGYSSIMFIPAAILCIAPVDAVDWVV----MLFAMTWSLFFLLTNLWHVISEHLTKEKMLPVLAVISGAHM 252          
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match: A0A1V9ZA87_9STRA (Protein YIPF n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZA87_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.410e-16
Identity = 64/208 (30.77%), Postives = 106/208 (50.96%), Query Frame = 3
Query:  147 ISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGMTSDAS-----AGEFSEVSTSAYCVLAYLAVGSAGLWAFFRAHDVPLSSSEALSVYGYSL-----TPFLAAAPLCLFSWPFRSSGLAMASLLAAIFVLRSSWPRLVEHMPEKSKGLLLAAVATYHVFSFLLL 740
            + +CG  ++ FYQPYF+V+T ++++RL +A  P +K  S    +  +    D YGP W+SATLIF ++  +N    +  +       + +FS V+TS   V  YL      LW+  +   VPL  S  + +YGYS+     T F+  AP     W      +A + L    F+L + W  + E++P++    LL+ + T H+   +LL
Sbjct:   57 LGLCGCFTLGFYQPYFNVDTVDIQVRLTRALIPFKKDPSF---KDLALTNPDAYGPFWISATLIFCMASCSNIASWLDYEGEDPSKWSYDFSYVATSMTMVGIYLLALPFALWSVGKYISVPLPLSFLVCLYGYSMVIFIPTMFVCTAPSDAADWVMMLFAMAWSLL----FLLSNMWGYIAEYLPKEKLLPLLSFIGTTHLIWVVLL 257          
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match: A0A7S0SX75_9STRA (Protein YIPF (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SX75_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.340e-16
Identity = 65/219 (29.68%), Postives = 114/219 (52.05%), Query Frame = 3
Query:   78 PLNGRAAGAVATKA---GRGPPPPQKISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGMTSDASAG-----EFSEVSTSAYCVLAYLAVGSAGLWAFFRAHDVPLSSSEALSVYGYSLTPFLAAAPLCLF-----SWPFRSSGLAMASLLAAIFVLRSSWPRLVEHMPEKSKGLL 695
            PL  + AGA   +     +    P  +  CG LS+ +YQP+FDV+T+++  RL  A +  R+  ++F++    S + D YGP W+S TL+F ++V ++ R G  S   AG     +F  + +++  +  + +     +W   + +D  +     + VYGYSL  F+ A+ LCLF     SW      L + + L+++F+LRS  P ++  + + S  LL
Sbjct:   27 PLISKVAGAATQQLLGNNKSTKNPNDMPFCGCLSISYYQPFFDVDTTDIIKRLSLAVFYCRR-ETNFIDI--ISDKPDAYGPFWISTTLVFTLAVTSHIR-GWLSSWMAGTTWVYDFQSIISASSLIYGFASFVPFLVWIILKQYDGNVKLITMICVYGYSLFMFIPASLLCLFPSEVVSWLI----LLVTACLSSLFILRSLGPLIIASVKQDSIMLL 237          
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match: H3GVJ5_PHYRM (Protein YIPF n=25 Tax=Phytophthora TaxID=4783 RepID=H3GVJ5_PHYRM)

HSP 1 Score: 88.6 bits (218), Expect = 4.760e-16
Identity = 65/217 (29.95%), Postives = 110/217 (50.69%), Query Frame = 3
Query:   99 GAVATKAGRGPPPPQKISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGMTSDASAGEFS---EVSTSAYCVLAYLAVGSAGL-WAFFRAHDVPLSSSEALSVYGYSLTPFLAAAPLCL-----FSWPFRSSGLAMASLLAAIFVLRSSWPRLVEHMPEKSKGLLLAAVATYHV 722
            G+ +   G    P + + +CG  S+ FYQPYFDV+TS+V+ RL++A  P +K   +F E   + +  D YGP W+S TLIF ++  +N    +  + +  E+S       SAY ++    +G   L W   +   VP++    + +YGYS   F+ AA LC+       W      + MA   +  F+L + W  + EH+ ++    +LA ++  H+
Sbjct:   46 GSKSAAYGEDGKPARPMGLCGCFSLAFYQPYFDVDTSDVQQRLMRALVPFKK-DPTFAEL--ALKAPDAYGPFWLSTTLIFCLASCSNVASYLDYEGNTDEWSYDFSRLASAYTLVEIFLMGLPMLIWLVGKYFQVPMTLLFLVCLYGYSSIMFIPAAILCISPLDGMDWVV----MLMAMAWSLFFLLNNLWHVISEHLTKEKMLPVLAVISGAHM 255          
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match: A0A662XNT8_9STRA (Protein YIPF n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNT8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.010e-16
Identity = 65/200 (32.50%), Postives = 111/200 (55.50%), Query Frame = 3
Query:  147 ISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGM--TSDAS--AGEFSEVSTSAYCVLAYLAVGSAGL-WAFFRAHDVPLSSSEALSVYGYSLTPFLAAAPLCLFSWPFRSSG---LAMASLLAAIFVLRSSWPRLVEHMPEKSKGLLLAAVATYHV 722
            + MCG L++ +Y+PYFDV+T++V++RL++A  P +K   SF E   +S   D YGP W+S TLIF ++  +N    +  T D S  + +FS ++ SAY ++    +G   L W   +   VP++    + +YGYS+  F+ AA LC  + P  +     L +A   +  F+L + W  + EH+ ++    +LA +   H+
Sbjct:   26 MGMCGCLTLAYYKPYFDVDTTDVQLRLMRALVPFKK-EPSFAELAMASP--DAYGPFWLSTTLIFCLASCSNVASFLDYTGDTSEWSYDFSRLA-SAYTLVEIFLLGLPVLIWLVGKYFQVPMTLLFLVCLYGYSMMMFIPAAILC--TIPIDAMDWVVLLLAMTWSLFFLLSNLWSVISEHLTKEKMLPVLAVIRYAHL 219          
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match: A0A3F2RX72_9STRA (Protein YIPF n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RX72_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.220e-15
Identity = 58/205 (28.29%), Postives = 107/205 (52.20%), Query Frame = 3
Query:  135 PPQKISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGMTSDASAGE----FSEVSTSAYCVLAYLAVGSAGLWAFFRAHDVPLSSSEALSVYGYSLTPFLAAAPLCLF-----SWPFRSSGLAMASLLAAIFVLRSSWPRLVEHMPEKSKGLLLAAVATYHV 722
            P + + +CG  ++ +YQP FDV+T++V++RL++A  P +K   +F E   + +  D YGP W+S TLIF ++  +NA   +  +    E    FS ++++   V  +L      +W   +   VP++    + +YGYS+  F+ AA  C+F      W      L +A   +  F+L + W  + EH+ ++    +LA ++  H+
Sbjct:   59 PQRPMGLCGCFTLAYYQPLFDVDTTDVQLRLMRALVPFKK-EPTFAEL--ALKAPDAYGPFWLSTTLIFCLASCSNAASFLDYEGDMNEWSYDFSRLASACTLVEIFLLGLPTLIWLVGKYFQVPMTLLFLVCLYGYSMIMFIPAAIFCVFPADAVDWVV----LLLAMSWSLFFLLNNLWSVIAEHLTKEKMLPVLAVISASHM 256          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8T9_9PHAE2.270e-10271.60Protein YIPF n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
M4B6U3_HYAAE2.630e-1834.42Protein YIPF n=1 Tax=Hyaloperonospora arabidopsidi... [more]
A0A8J2SR10_9STRA2.870e-1832.38Protein YIPF n=1 Tax=Pelagomonas calceolata TaxID=... [more]
A0A8K1CS43_PYTOL1.300e-1732.49Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1A6N6_PLAHL1.810e-1630.73Protein YIPF n=1 Tax=Plasmopara halstedii TaxID=47... [more]
A0A1V9ZA87_9STRA2.410e-1630.77Protein YIPF n=3 Tax=Saprolegniaceae TaxID=4764 Re... [more]
A0A7S0SX75_9STRA4.340e-1629.68Protein YIPF (Fragment) n=1 Tax=Chromulina nebulos... [more]
H3GVJ5_PHYRM4.760e-1629.95Protein YIPF n=25 Tax=Phytophthora TaxID=4783 RepI... [more]
A0A662XNT8_9STRA7.010e-1632.50Protein YIPF n=2 Tax=Nothophytophthora sp. Chile5 ... [more]
A0A3F2RX72_9STRA2.220e-1528.29Protein YIPF n=1 Tax=Phytophthora kernoviae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig534contigL-elsbetiae_contig534:24439..27217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score322.0
Seed ortholog evalue2.3e-85
Seed eggNOG ortholog2880.D7FQK8
Preferred nameYIPF3
KEGG koko:K00688,ko:K15149
KEGG ReactionR02111
KEGG Pathwayko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0017016,GO:0017137,GO:0019899,GO:0030133,GO:0031224,GO:0031267,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0051020,GO:0051179,GO:0051234,GO:0097708
EggNOG free text desc.Rab GTPase binding
EggNOG OGsKOG3114@1,KOG3114@2759
EC2.4.1.1
COG Functional cat.S
CAZyGT35
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021
Ec32 ortholog descriptionYip1 domain
Ec32 orthologEc-01_009070.1
Exons4
Model size1490
Cds size717
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig534.13515.1prot_L-elsbetiae_contig534.13515.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig534 24474..26479 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.5763013-UTR-L-elsbetiae_contig534:24438..244731622816554.5763013-UTR-L-elsbetiae_contig534:24438..24473Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig534 24439..24473 +
1691683643.74124-UTR-L-elsbetiae_contig534:24438..244731691683643.74124-UTR-L-elsbetiae_contig534:24438..24473Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig534 24439..24473 +
1622816554.6363974-UTR-L-elsbetiae_contig534:26479..272171622816554.6363974-UTR-L-elsbetiae_contig534:26479..27217Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig534 26480..27217 +
1691683643.827979-UTR-L-elsbetiae_contig534:26479..272171691683643.827979-UTR-L-elsbetiae_contig534:26479..27217Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig534 26480..27217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.5885835-CDS-L-elsbetiae_contig534:24473..245071622816554.5885835-CDS-L-elsbetiae_contig534:24473..24507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 24474..24507 +
1691683643.7690835-CDS-L-elsbetiae_contig534:24473..245071691683643.7690835-CDS-L-elsbetiae_contig534:24473..24507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 24474..24507 +
1622816554.6001036-CDS-L-elsbetiae_contig534:24789..250401622816554.6001036-CDS-L-elsbetiae_contig534:24789..25040Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 24790..25040 +
1691683643.7816405-CDS-L-elsbetiae_contig534:24789..250401691683643.7816405-CDS-L-elsbetiae_contig534:24789..25040Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 24790..25040 +
1622816554.611366-CDS-L-elsbetiae_contig534:25631..258231622816554.611366-CDS-L-elsbetiae_contig534:25631..25823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 25632..25823 +
1691683643.794592-CDS-L-elsbetiae_contig534:25631..258231691683643.794592-CDS-L-elsbetiae_contig534:25631..25823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 25632..25823 +
1622816554.6217225-CDS-L-elsbetiae_contig534:26239..264791622816554.6217225-CDS-L-elsbetiae_contig534:26239..26479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 26240..26479 +
1691683643.8154922-CDS-L-elsbetiae_contig534:26239..264791691683643.8154922-CDS-L-elsbetiae_contig534:26239..26479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 26240..26479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig534.13515.1

>prot_L-elsbetiae_contig534.13515.1 ID=prot_L-elsbetiae_contig534.13515.1|Name=mRNA_L-elsbetiae_contig534.13515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp
MMATEEAGWDEGEEPLNGRAAGAVATKAGRGPPPPQKISMCGLLSVQFYQ
PYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATL
IFLISVAANARRGMTSDASAGEFSEVSTSAYCVLAYLAVGSAGLWAFFRA
HDVPLSSSEALSVYGYSLTPFLAAAPLCLFSWPFRSSGLAMASLLAAIFV
LRSSWPRLVEHMPEKSKGLLLAAVATYHVFSFLLLTVV*
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mRNA from alignment at L-elsbetiae_contig534:24439..27217+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig534.13515.1 ID=mRNA_L-elsbetiae_contig534.13515.1|Name=mRNA_L-elsbetiae_contig534.13515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2779bp|location=Sequence derived from alignment at L-elsbetiae_contig534:24439..27217+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTCAGGCATCTGGTAGGCACGACTGAAAGCAAGATGATGGCCACAGAG GAAGCAGGCTGGGATGAAGGTGCGTTGTACGAGAGTGAGCCTGCATCTCT GCGTTTAATACAGCAGTAGACTGATCTGTGTAGCAAAAAATAGGAACCTT TCTCGTTCCGTGCGGGGAGACGATGAACTCTGTCACTCGGCAGGAGATAT ATACACTTTCCCAACCCCCGCCTCCCTCTCTATCCCCAACACCCGAACCG GACCGCGTCGCGCTCATCGCCCGGTTCGCACTGTGCTGTGGTTTGCATAA ACGCCGGTTTTTGTCGCGATTTGTTTCTCCAACATCGCGATACATACACA GGAGAGGAACCGTTGAACGGCCGGGCCGCAGGGGCAGTCGCGACGAAGGC AGGCAGAGGTCCCCCACCGCCTCAAAAGATAAGCATGTGCGGTCTTCTCT CCGTGCAGTTTTACCAGCCCTACTTCGATGTCAACACGAGCGAAGTGAAA ATGAGGCTGTTGCAGGCCGCATGGCCGGTACGCAAGACGAGTTCGAGCTT CCTTGAAGAGGGGGAGAGCTCACAACAGGCCGACCTCTACGGGCCGGTTT GGGTGAGCAATCACAGATCGAGTTTCCACAGCATCCGGTACCGGAAGTAA TGGAAGCGCGTGCCAAGCAGTCGATACCTCTCTGCCGCTGCAGCTTGTTG CCTCGCTGGTTTGCCTGCTCTTGTGTGTTGTGTGTGCGTGTGTGTGTTGT GTGTCCCTATATGTGATTCCCAGCTACCACTCCACATGCCACGCGGGGGA AGGCTATAGTAATGGTCACCAACAGAAGGTTAGGTTACATACCTACCGAC CGGGTGTGCCATCTCGCTCCCCCCATCCACATTGGTCTAAATCGATCGGT GCAACTGGGCGCATAGAGTAGTAGAACACTCACACCCACAACAGTAGACT ACGCTCACACCCACGGCTCTACCGCCAAATTGGAGCAAGGAATGAACGGT ATACTGTAAGTACATACAAATTGTCCATTCATAAAAGCCCTTGCGGCAGA GAGGCTTTCTTGCCCCATTGGTTATGCCAGGGCTACCCGCACCACATCGC GCAATCACCTTGTTCTCCGTTTTGAACCCCCTCCCTCAACAGCAGTTCTA CCACGACTTGGTATTGACTCAATTTGACCTTTGGCGTATGCAGGTCTCTG CGACCCTGATCTTTTTGATTTCCGTGGCGGCCAACGCGCGGCGAGGGATG ACGAGTGATGCCTCCGCTGGGGAGTTCAGTGAGGTTTCCACGAGCGCGTA TTGTGTGCTTGCCTACCTCGCCGTCGGATCTGCCGGGCTTTGGGCATTCT TCAGGGCACACGATGTGCCATTGTCCTCTTCTGAGGTATGGCGCCTTCCG TGTATGATGCTGAGCCAACACGGTTGTTTTTCGTGTCTGCGGTGGCGTGC ATAGACCATCCGTTCGCGCGAAGCACTTCTATCCCACACGGCGGTCGCTT CTGCTGAGCTCAACGAGAACCTGCCATAGGGGTGTCTCTTTTATTCGTGC GTCCCACAGCAATACTCGTACAGCAGTAGTTGGAGCATAACCGGAAACCG CGCTCTGACTTATGATCCTTTCTTCCTTCCTCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCTGGCCGTCCCCCTCTGTC CCCCCTCCNNNNNNNNNNAAAATCCGAAACACCCCTTGAATATATACTCC TTTTTTTCTCCCCCCCCCCCCCCCCCCCCCCCCCGGCTTGCCTGCTGGTA GGCCCTGAGTGTTTACGGTTACTCACTCACCCCGTTCCTGGCGGCGGCGC CGCTCTGCCTGTTCTCATGGCCGTTCCGATCGTCCGGCCTTGCAATGGCG AGTCTCTTGGCGGCGATCTTCGTGCTCCGGAGTTCGTGGCCCAGGCTGGT GGAGCACATGCCGGAGAAGTCGAAGGGGCTGCTCCTTGCTGCGGTTGCAA CATACCACGTGTTTTCGTTCCTTCTGCTCACGGTTGTTTAGAGGAAGGCG GCGCGACAATTTGCTCCTGTTGGGTTGGTTCTGTACGCGTACCTACATTT TGCGTTTTTCTAATCGTTTTCATCTTTTTAGGTTTGTAGTGTTTTGCTTT GTTTTTTGCGCTGCGTTGCATTATGTAGCGTAGCTGGGGGGTTGGTTGTG CATGAATTGACGTTGAGCTAGGATGATAAATTCATTGTTAACGAAGAGAC GGCTCTTCTGAAGAGTGCACAACCTGTGTTCGATGTTGTCCAGTCCATTG TTCCCAGGTCTTGGTTACAAGGACGTTGCAGGCAGCAGACCCCCGCCGTT CGTATACTCCTACTTCCGTCTGTATATAAGTACGACGATATGTAGGCCTG CCGTAAATCTCACACGTGGTACTTATTGACTCTTTTGAAAACAAGAGTTC TCGCTTAGCCTTCCTGGCTCCCAAACAGTTCAGAGGGCTGTGTGGCGCGC CCCACCGCGCTCGTAGCACACCGTCCGGTTTGTTGGGAATACGCGAAGCA TGACCAAGATAGTGTGAAGGTAGTGCGCAGAACTCTTCTGCCCGGGAGTA GCAGACCTCTGGGATATGGGTTTCCCGTGTGACATAGGGCGTGTTTGTGT GGATCCCGTTGGTGACTTGTGACTTGAGGCCGACTCTCACTCTCTCCCTC TCTCTCCTGAGATCCTCCTCCCCCTTACCCCTCGGGCGCTCCTCACGGGA GCGCACCGGGAGAATAATACAAGCGATCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig534:24439..27217+

>mRNA_L-elsbetiae_contig534.13515.1 ID=mRNA_L-elsbetiae_contig534.13515.1|Name=mRNA_L-elsbetiae_contig534.13515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig534:24439..27217+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGCCACAGAGGAAGCAGGCTGGGATGAAGATGATGGCCACAGAGG
AAGCAGGCTGGGATGAAGGAGAGGAACCGTTGAACGGCCGGGCCGCAGGG
GCAGTCGCGACGAAGGCAGGCAGAGGTCCCCCACCGCCTCAAAAGATAAG
CATGTGCGGTCTTCTCTCCGTGCAGTTTTACCAGCCCTACTTCGATGTCA
ACACGAGCGAAGTGAAAATGAGGCTGTTGCAGGCCGCATGGCCGGTACGC
AAGACGAGTTCGAGCTTCCTTGAAGAGGGGGAGAGCTCACAACAGGCCGA
CCTCTACGGGCCGGTTTGGGAGAGGAACCGTTGAACGGCCGGGCCGCAGG
GGCAGTCGCGACGAAGGCAGGCAGAGGTCCCCCACCGCCTCAAAAGATAA
GCATGTGCGGTCTTCTCTCCGTGCAGTTTTACCAGCCCTACTTCGATGTC
AACACGAGCGAAGTGAAAATGAGGCTGTTGCAGGCCGCATGGCCGGTACG
CAAGACGAGTTCGAGCTTCCTTGAAGAGGGGGAGAGCTCACAACAGGCCG
ACCTCTACGGGCCGGTTTGGGTCTCTGCGACCCTGATCTTTTTGATTTCC
GTGGCGGCCAACGCGCGGCGAGGGATGACGAGTGATGCCTCCGCTGGGGA
GTTCAGTGAGGTTTCCACGAGCGCGTATTGTGTGCTTGCCTACCTCGCCG
TCGGATCTGCCGGGCTTTGGGCATTCTTCAGGGCACACGATGTGCCATTG
TCCTCTTCTGAGGTCTCTGCGACCCTGATCTTTTTGATTTCCGTGGCGGC
CAACGCGCGGCGAGGGATGACGAGTGATGCCTCCGCTGGGGAGTTCAGTG
AGGTTTCCACGAGCGCGTATTGTGTGCTTGCCTACCTCGCCGTCGGATCT
GCCGGGCTTTGGGCATTCTTCAGGGCACACGATGTGCCATTGTCCTCTTC
TGAGGCCCTGAGTGTTTACGGTTACTCACTCACCCCGTTCCTGGCGGCGG
CGCCGCTCTGCCTGTTCTCATGGCCGTTCCGATCGTCCGGCCTTGCAATG
GCGAGTCTCTTGGCGGCGATCTTCGTGCTCCGGAGTTCGTGGCCCAGGCT
GGTGGAGCACATGCCGGAGAAGTCGAAGGGGCTGCTCCTTGCTGCGGTTG
CAACATACCACGTGTTTTCGTTCCTTCTGCTCACGGTTGTTTAGGCCCTG
AGTGTTTACGGTTACTCACTCACCCCGTTCCTGGCGGCGGCGCCGCTCTG
CCTGTTCTCATGGCCGTTCCGATCGTCCGGCCTTGCAATGGCGAGTCTCT
TGGCGGCGATCTTCGTGCTCCGGAGTTCGTGGCCCAGGCTGGTGGAGCAC
ATGCCGGAGAAGTCGAAGGGGCTGCTCCTTGCTGCGGTTGCAACATACCA
CGTGTTTTCGTTCCTTCTGCTCACGGTTGTTTAG
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