mRNA_L-elsbetiae_contig5331.13501.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5331.13501.1
Unique NamemRNA_L-elsbetiae_contig5331.13501.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5331.13501.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 4.020e-59
Identity = 97/108 (89.81%), Postives = 102/108 (94.44%), Query Frame = 1
Query:  295 LFFSKREVNKYNGKKLRDLDEPVARVSAVHTGANARRATADTAEGLERGLYLAKGTKVMLTKNLYQQVGLVNGIRGDVVELVFADDAPPPNLPLYVVVKFRGYSGGEW 618
            LF+SK+EVNKYNGKKLR+LD PVARVSAVHTGANARRATADTAEGLER LYLAKG KVML+KNLYQQVGLVNGIRG+VVELV ADDAPPP LPLYVVVKF GYSGGEW
Sbjct:   52 LFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEW 159          
BLAST of mRNA_L-elsbetiae_contig5331.13501.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 7.200e-59
Identity = 104/118 (88.14%), Postives = 111/118 (94.07%), Query Frame = 1
Query:  265 QKAEFKDATRLFFSKREVNKYNGKKLRDLDEPVARVSAVHTGANARRATADTAEGLERGLYLAKGTKVMLTKNLYQQVGLVNGIRGDVVELVFADDAPPPNLPLYVVVKFRGYSGGEW 618
            +KA F+DATRLF+SK+EVNKYNGKKLR+LD PVARVSAVHTGANARRATADTAEGLER LYLAKG KVML+KNLYQQVGLVNGIRG+VVELV ADDAPPP LPLYVVVKF GYSGGEW
Sbjct: 1347 EKAAFEDATRLFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEW 1464          
BLAST of mRNA_L-elsbetiae_contig5331.13501.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.360e-34
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 1
Query:  265 QKAEFKDATRLFFSKREVNKYNGKKLRDLDEPVARVSAVHTGANARRATADTAEGLERGLYLAKGTKVMLTKNLYQQVGLVNG 513
            +KA F+DATRLF+SK+EVNKYNGKKLR+LD PVARVSAVHTGANARRATADTAEGLER LYLAKG KVML+KNLYQQVGL  G
Sbjct:  270 EKAAFEDATRLFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLDGG 352          
BLAST of mRNA_L-elsbetiae_contig5331.13501.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 3.540e-31
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 1
Query:  415 DTAEGLERGLYLAKGTKVMLTKNLYQQVGLVNGIRGDVVELVFADDAPPPNLPLYVVVKFRGYSGGEW 618
            DTAEGLER LYLAKG KVML+KNLYQQVGLVNGIRG+VVELV ADDAPPP LPLYVVVKF GYSGGEW
Sbjct:  266 DTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEW 333          
BLAST of mRNA_L-elsbetiae_contig5331.13501.1 vs. uniprot
Match: UPI001CF206B2 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF206B2)

HSP 1 Score: 110 bits (276), Expect = 1.760e-25
Identity = 55/111 (49.55%), Postives = 78/111 (70.27%), Query Frame = 1
Query:  277 FKDATRLFFSKREVNKYNGKKLRDLDEPVARVSAVHTGANARRATADTAEGLERGLYLAKGTKVMLTKNLYQQVGLVNGIRGDVVELVFADDAPPPNLPLYVVVKFRGYSG 609
            FKD  RL++S  EV KYN +KL  L++P+AR++A H+   A++A+AD   GLE  ++LAKG +VMLT NL+  VGL NG  G VV  ++A +  PP+LP+ V+VKF  Y+G
Sbjct:  123 FKDTVRLYYSNDEVAKYNFEKLSALNQPIARINARHSTEAAKKASADEMSGLEPVVFLAKGAQVMLTMNLWTDVGLCNGATGTVVNFIYATNQQPPDLPIAVIVKFDDYAG 233          
BLAST of mRNA_L-elsbetiae_contig5331.13501.1 vs. uniprot
Match: UPI00109BC70A (uncharacterized protein LOC110236158 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BC70A)

HSP 1 Score: 112 bits (281), Expect = 3.360e-25
Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = 1
Query:  274 EFKDATRLFFSKREVNKYNGKKLRDLDEPVARVSAVHTGANARRATADTAEGLERGLYLAKGTKVMLTKNLYQQVGLVNGIRGDVVELVFADDAPPPNLPLYVVVKFRGYSG 609
            EFKD TRLF+S  EV KYN  KL +L  P+A++ A H+   A++ +     GLE  L+LAKG  VMLT NL+  VGL NG +G V+++++  D  PP+LP+ VVVKF  YSG
Sbjct: 1508 EFKDVTRLFYSNEEVGKYNFSKLEELKHPIAKIEARHSTIKAKKISPQELFGLEPLLFLAKGAVVMLTNNLWTSVGLCNGAKGTVMDIIYHPDHKPPSLPIAVVVKFESYSG 1619          
BLAST of mRNA_L-elsbetiae_contig5331.13501.1 vs. uniprot
Match: A0A6S7LPR6_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7LPR6_PARCT)

HSP 1 Score: 107 bits (267), Expect = 2.380e-24
Identity = 53/113 (46.90%), Postives = 77/113 (68.14%), Query Frame = 1
Query:  271 AEFKDATRLFFSKREVNKYNGKKLRDLDEPVARVSAVHTGANARRATADTAEGLERGLYLAKGTKVMLTKNLYQQVGLVNGIRGDVVELVFADDAPPPNLPLYVVVKFRGYSG 609
            +EF+DATRLF+S  +V  YN  +L  L++PVA ++A H+ A A++  ++   GLE  ++LAKG KVMLT NL+  VGL NG  G V++ +F  +  PP+LP+ VVV+F  Y G
Sbjct:   93 SEFEDATRLFYSNEQVANYNHDQLSKLEQPVAHINARHSSAIAKKIASEDMSGLEPVVFLAKGAKVMLTMNLWSNVGLCNGATGTVIDFIFESNHRPPDLPVGVVVQFDNYRG 205          
BLAST of mRNA_L-elsbetiae_contig5331.13501.1 vs. uniprot
Match: UPI00109B989B (uncharacterized protein LOC110242621 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109B989B)

HSP 1 Score: 108 bits (269), Expect = 2.560e-24
Identity = 51/113 (45.13%), Postives = 76/113 (67.26%), Query Frame = 1
Query:  271 AEFKDATRLFFSKREVNKYNGKKLRDLDEPVARVSAVHTGANARRATADTAEGLERGLYLAKGTKVMLTKNLYQQVGLVNGIRGDVVELVFADDAPPPNLPLYVVVKFRGYSG 609
            A+F +ATRLF+S  EV+ YN ++L+ L +P A ++A H+   A+   +D   GLE  +YLAKG KVM T NL+  VGL NG  G +V++++A +  PP+LP+ V+V+F  Y G
Sbjct:  121 ADFNEATRLFYSNEEVSSYNFEQLKKLRQPCANINAPHSSVTAKNLPSDEMSGLEPTVYLAKGAKVMFTMNLWASVGLCNGATGTIVDIIYATNHQPPDLPIAVIVRFDDYRG 233          
BLAST of mRNA_L-elsbetiae_contig5331.13501.1 vs. uniprot
Match: A0A2B4RQ91_STYPI (ATP-dependent DNA helicase n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RQ91_STYPI)

HSP 1 Score: 107 bits (268), Expect = 1.790e-23
Identity = 53/112 (47.32%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  274 EFKDATRLFFSKREVNKYNGKKLRDLDEPVARVSAVHTGANARRATADTAEGLERGLYLAKGTKVMLTKNLYQQVGLVNGIRGDVVELVFADDAPPPNLPLYVVVKFRGYSG 609
            EF+DATRL+FS  EV  YN +KL +L +P+A ++A H+   A++A++D   GL+  ++LAKG  VMLT NL+  VGL NG  G V + ++A++  PP+LP+ V+VKF  Y G
Sbjct:  811 EFQDATRLYFSNEEVANYNFEKLSELHQPIACITARHSSDIAKKASSDDMSGLQPTIFLAKGAHVMLTMNLWIDVGLCNGATGTVEDFIYANNQQPPDLPVAVIVKFNEYRG 922          
BLAST of mRNA_L-elsbetiae_contig5331.13501.1 vs. uniprot
Match: A0A2B4S669_STYPI (ATP-dependent DNA helicase n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S669_STYPI)

HSP 1 Score: 107 bits (268), Expect = 1.870e-23
Identity = 53/112 (47.32%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  274 EFKDATRLFFSKREVNKYNGKKLRDLDEPVARVSAVHTGANARRATADTAEGLERGLYLAKGTKVMLTKNLYQQVGLVNGIRGDVVELVFADDAPPPNLPLYVVVKFRGYSG 609
            EF+DATRL+FS  EV  YN +KL +L +P+A ++A H+   A++A++D   GL+  ++LAKG  VMLT NL+  VGL NG  G V + ++A++  PP+LP+ V+VKF  Y G
Sbjct: 1716 EFQDATRLYFSNEEVANYNFEKLSELHQPIACITARHSSDIAKKASSDDMSGLQPTIFLAKGAHVMLTMNLWIDVGLCNGATGTVEDFIYANNQQPPDLPVAVIVKFNEYRG 1827          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5331.13501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS2_9PHAE4.020e-5989.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L976_9PHAE7.200e-5988.14ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5J8Y8_9PHAE1.360e-3485.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG8_9PHAE3.540e-3189.71Reverse transcriptase domain-containing protein n=... [more]
UPI001CF206B21.760e-2549.55ATP-dependent DNA helicase PIF1-like n=1 Tax=Acrop... [more]
UPI00109BC70A3.360e-2550.00uncharacterized protein LOC110236158 n=1 Tax=Exaip... [more]
A0A6S7LPR6_PARCT2.380e-2446.90Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
UPI00109B989B2.560e-2445.13uncharacterized protein LOC110242621 n=1 Tax=Exaip... [more]
A0A2B4RQ91_STYPI1.790e-2347.32ATP-dependent DNA helicase n=2 Tax=Stylophora pist... [more]
A0A2B4S669_STYPI1.870e-2347.32ATP-dependent DNA helicase n=2 Tax=Stylophora pist... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5331contigL-elsbetiae_contig5331:12089..12709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score99.4
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog588596.U9SX07
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs39RYU@33154,3P64X@4751,COG0507@1,KOG0987@2759
COG Functional cat.L
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons1
Model size621
Cds size621
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816553.2953436-CDS-L-elsbetiae_contig5331:12088..127091622816553.2953436-CDS-L-elsbetiae_contig5331:12088..12709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5331 12089..12709 +
1691683642.8424685-CDS-L-elsbetiae_contig5331:12088..127091691683642.8424685-CDS-L-elsbetiae_contig5331:12088..12709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5331 12089..12709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5331.13501.1prot_L-elsbetiae_contig5331.13501.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5331 12089..12709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5331.13501.1

>prot_L-elsbetiae_contig5331.13501.1 ID=prot_L-elsbetiae_contig5331.13501.1|Name=mRNA_L-elsbetiae_contig5331.13501.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
MPPHPLSVQLPAVQEGQAEPEAVLLRQQHGSSERDRRAPTTDPDGGDAHR
SMLSDHARPPPQGGPARIRWPLGPCRQRRSGHHHLRRHQKAEFKDATRLF
FSKREVNKYNGKKLRDLDEPVARVSAVHTGANARRATADTAEGLERGLYL
AKGTKVMLTKNLYQQVGLVNGIRGDVVELVFADDAPPPNLPLYVVVKFRG
YSGGEW*
back to top

mRNA from alignment at L-elsbetiae_contig5331:12089..12709+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5331.13501.1 ID=mRNA_L-elsbetiae_contig5331.13501.1|Name=mRNA_L-elsbetiae_contig5331.13501.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=621bp|location=Sequence derived from alignment at L-elsbetiae_contig5331:12089..12709+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTCCCCACCCACTCTCGGTTCAGTTGCCTGCGGTGCAAGAAGGACA AGCAGAGCCTGAAGCTGTTCTCCTCCGACAACAACATGGATCCTCGGAGC GTGACCGCCGAGCTCCAACAACTGACCCAGACGGAGGAGATGCTCATCGC TCGATGCTGTCCGATCATGCGCGTCCTCCACCTCAAGGGGGGCCAGCTAG GATACGGTGGCCATTAGGGCCATGTCGTCAACGTCGCTCAGGACATCACC ACCTTCGCCGCCACCAGAAAGCGGAATTCAAGGACGCCACGAGGCTCTTC TTCTCCAAGAGGGAGGTCAACAAGTACAACGGGAAGAAACTCCGGGACCT GGACGAGCCGGTCGCTCGTGTTAGCGCCGTTCACACGGGCGCCAACGCCA GAAGGGCAACAGCAGACACAGCGGAGGGGCTGGAGAGGGGCCTCTACCTA GCCAAGGGGACCAAGGTTATGCTCACGAAGAACCTGTATCAACAAGTTGG ACTAGTCAACGGCATTCGAGGCGATGTCGTGGAGTTGGTGTTTGCAGATG ACGCACCCCCGCCGAACCTCCCCCTTTACGTTGTCGTCAAGTTCAGAGGG TACTCAGGGGGGGAATGGTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5331:12089..12709+

>mRNA_L-elsbetiae_contig5331.13501.1 ID=mRNA_L-elsbetiae_contig5331.13501.1|Name=mRNA_L-elsbetiae_contig5331.13501.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1242bp|location=Sequence derived from alignment at L-elsbetiae_contig5331:12089..12709+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTCCCCACCCACTCTCGGTTCAGTTGCCTGCGGTGCAAGAAGGACA
AGCAGAGCCTGAAGCTGTTCTCCTCCGACAACAACATGGATCCTCGGAGC
GTGACCGCCGAGCTCCAACAACTGACCCAGACGGAGGAGATGCTCATCGC
TCGATGCTGTCCGATCATGCGCGTCCTCCACCTCAAGGGGGGCCAGCTAG
GATACGGTGGCCATTAGGGCCATGTCGTCAACGTCGCTCAGGACATCACC
ACCTTCGCCGCCACCAGAAAGCGGAATTCAAGGACGCCACGAGGCTCTTC
TTCTCCAAGAGGGAGGTCAACAAGTACAACGGGAAGAAACTCCGGGACCT
GGACGAGCCGGTCGCTCGTGTTAGCGCCGTTCACACGGGCGCCAACGCCA
GAAGGGCAACAGCAGACACAGCGGAGGGGCTGGAGAGGGGCCTCTACCTA
GCCAAGGGGACCAAGGTTATGCTCACGAAGAACCTGTATCAACAAGTTGG
ACTAGTCAACGGCATTCGAGGCGATGTCGTGGAGTTGGTGTTTGCAGATG
ACGCACCCCCGCCGAACCTCCCCCTTTACGTTGTCGTCAAGTTCAGAGGG
TACTCAGGGGGGGAATGGTAGATGCCTCCCCACCCACTCTCGGTTCAGTT
GCCTGCGGTGCAAGAAGGACAAGCAGAGCCTGAAGCTGTTCTCCTCCGAC
AACAACATGGATCCTCGGAGCGTGACCGCCGAGCTCCAACAACTGACCCA
GACGGAGGAGATGCTCATCGCTCGATGCTGTCCGATCATGCGCGTCCTCC
ACCTCAAGGGGGGCCAGCTAGGATACGGTGGCCATTAGGGCCATGTCGTC
AACGTCGCTCAGGACATCACCACCTTCGCCGCCACCAGAAAGCGGAATTC
AAGGACGCCACGAGGCTCTTCTTCTCCAAGAGGGAGGTCAACAAGTACAA
CGGGAAGAAACTCCGGGACCTGGACGAGCCGGTCGCTCGTGTTAGCGCCG
TTCACACGGGCGCCAACGCCAGAAGGGCAACAGCAGACACAGCGGAGGGG
CTGGAGAGGGGCCTCTACCTAGCCAAGGGGACCAAGGTTATGCTCACGAA
GAACCTGTATCAACAAGTTGGACTAGTCAACGGCATTCGAGGCGATGTCG
TGGAGTTGGTGTTTGCAGATGACGCACCCCCGCCGAACCTCCCCCTTTAC
GTTGTCGTCAAGTTCAGAGGGTACTCAGGGGGGGAATGGTAG
back to top