mRNA_L-elsbetiae_contig5331.13500.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5331.13500.1 vs. uniprot
Match: A0A6H5KKD9_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKD9_9PHAE) HSP 1 Score: 337 bits (864), Expect = 3.710e-102 Identity = 182/233 (78.11%), Postives = 195/233 (83.69%), Query Frame = 1 Query: 97 WEGTVTAIMGPSGAGKTSLLNALAGRLPSAGR-GGGXXXXXXXGLTGTVRLDGEAVGAARVRTVSAYVTQEDVLPETLTCYEHLMFHAHLRLPAGTSLSRRRDRVMEVMRQLALVDIRDSRIGGDLARGISGGEKRRLSIGTELLTRPALLFADEPTTGLDSSTALRVMQLLSQVASLGTTVVCSVHQPRPEVVRLIDKVIVLSRGAVAFSGPPSDAGAHFASIGRPFPRLEA 792 W GTVTAIMGPSGAGKTSLLNALAGRL R G GLTG VRL+G A G A VR +SAYVTQEDVLPETLTCYEHLMFHA LRLP T+L+RR DRV EV+ QL L IRDSRIGG L+RGISGGEKRRLSIGTELLTRPALLF DEPTTGLDSSTA+RVM+L+S++ASLGTTVVCSVHQPRPEVVRLI KVI+LSRGAVAF G PSDA AHFA+IGRPF RL A Sbjct: 1460 WGGTVTAIMGPSGAGKTSLLNALAGRLQDVQREASGGGRRRRPGLTGAVRLNGLAAGPAEVRALSAYVTQEDVLPETLTCYEHLMFHAQLRLPGHTTLARRHDRVAEVLEQLGLAGIRDSRIGGGLSRGISGGEKRRLSIGTELLTRPALLFLDEPTTGLDSSTAVRVMKLVSEIASLGTTVVCSVHQPRPEVVRLIHKVILLSRGAVAFCGAPSDAEAHFAAIGRPFSRLGA 1692
BLAST of mRNA_L-elsbetiae_contig5331.13500.1 vs. uniprot
Match: A0A6H5KT00_9PHAE (ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT00_9PHAE) HSP 1 Score: 266 bits (679), Expect = 2.320e-77 Identity = 151/259 (58.30%), Postives = 185/259 (71.43%), Query Frame = 1 Query: 64 GKGAPGDDADGWEGTVTAIMGPSGAGKTSLLNALAGRLPSAGR--GGGXXXXXXXGLTGTVRLDGEAVGAARVRTVSAYVTQEDVLPETLTCYEHLMFHAHLRLPAGTSLSR-------------------RRDRVMEVMRQLALVDIRDSRIGGDLARGISGGEKRRLSIGTELLTRPALLFADEPTTGLDSSTALRVMQLLSQVASL-GTTVVCSVHQPRPEVVRLIDKVIVLSRGAVAFSGPPSDAGAHFASIGRP 774 G G+P A W G+VTAIMGPSGAGKT+LLN LAGR+ G GG +TG VR++G AV AA VR VS YVTQEDVLPETLTC+EHLMFHA LR+ +++R R+ RV++V+R+L L D+RDSRIGG L+RGISGGEKRRLSI TELLT P LLF DEPTTGLD+STAL MQLLS +AS G TV+CS+HQPRP+V +D+V+++SRG+V+F GPP+ A+FAS+GRP Sbjct: 1293 GNGSPFASAPVWSGSVTAIMGPSGAGKTTLLNVLAGRMRRLGNKNNGGR-------VTGAVRINGRAVTAAEVRGVSGYVTQEDVLPETLTCFEHLMFHAELRMSTPEAVTRGCGXXXXXXRRXXRASREDRKHRVLQVLRELRLEDVRDSRIGGGLSRGISGGEKRRLSIATELLTCPGLLFLDEPTTGLDASTALTTMQLLSDLASSQGMTVLCSLHQPRPQVYDSLDRVLLVSRGSVSFFGPPATTQAYFASLGRP 1544
BLAST of mRNA_L-elsbetiae_contig5331.13500.1 vs. uniprot
Match: D8LNV5_ECTSI (ATP-binding cassette superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV5_ECTSI) HSP 1 Score: 263 bits (673), Expect = 1.580e-76 Identity = 150/259 (57.92%), Postives = 184/259 (71.04%), Query Frame = 1 Query: 64 GKGAPGDDADGWEGTVTAIMGPSGAGKTSLLNALAGRLPSAGR--GGGXXXXXXXGLTGTVRLDGEAVGAARVRTVSAYVTQEDVLPETLTCYEHLMFHAHLRL--PAGT-----------------SLSRRRDRVMEVMRQLALVDIRDSRIGGDLARGISGGEKRRLSIGTELLTRPALLFADEPTTGLDSSTALRVMQLLSQV-ASLGTTVVCSVHQPRPEVVRLIDKVIVLSRGAVAFSGPPSDAGAHFASIGRP 774 G +P A W G+VTAIMGPSGAGKT+LLN LAGR+ G+ GG +TG VR++G AV AA VR VS YVTQEDVLPETLTC+EHLMFHA LR+ P G S R+ RV++V+R+L L D+RDSRIGG L+RGISGGEKRRLSI TELLT P LLF DEPTTGLD+STAL MQLLS + +S G TV+CS+HQPRP+V +D+V+++SRG+++F GPP+ A+FAS+GRP Sbjct: 1386 GNASPSAAAPAWSGSVTAIMGPSGAGKTTLLNVLAGRMHRLGKKNNGGR-------VTGAVRINGRAVTAAEVRGVSGYVTQEDVLPETLTCFEHLMFHAELRMSTPEGVTGACGCGXXXXXXXHRASQEDRKHRVLQVLRELRLEDVRDSRIGGGLSRGISGGEKRRLSIATELLTCPGLLFLDEPTTGLDASTALTTMQLLSDLTSSRGMTVLCSLHQPRPQVYDSLDRVLLVSRGSISFFGPPASTQAYFASLGRP 1637
BLAST of mRNA_L-elsbetiae_contig5331.13500.1 vs. uniprot
Match: A0A7S0KER9_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KER9_MICPS) HSP 1 Score: 212 bits (540), Expect = 3.280e-62 Identity = 120/229 (52.40%), Postives = 155/229 (67.69%), Query Frame = 1 Query: 82 DDADGWEGTVTAIMGPSGAGKTSLLNALAGRLPSAGRGGGXXXXXXXGLTGTVRLDGEAVGAARVRTVSAYVTQEDVLPETLTCYEHLMFHAHLRLPAGTSLSRRRDRVMEVMRQLALVDIRDSRIGGDLARGISGGEKRRLSIGTELLTRPALLFADEPTTGLDSSTALRVMQLLSQVASLGTTVVCSVHQPRPEVVRLIDKVIVLSR-GAVAFSGPPSDAGAHFASI 765 DD+D + AI+GPSGAGK++LL+ LAGR P GTVRLDGEAV A VR S YV Q DVLP T T +EHLMF+A LRLP T+ S V MR+L LV + +S IG + RG+SGGEKRR+SI TELLT P ++F DEPTTGLDS+ A +V+ +LS + S+G TV+ S+HQPRP++ RL+D+V+V+S G V +SGP + A +HFAS+ Sbjct: 178 DDSDDAVSGLFAILGPSGAGKSTLLDFLAGRTPRG-----------QVAHGTVRLDGEAVSAREVRHASGYVQQTDVLPGTSTVWEHLMFNAALRLPPDTARSEAYRVVAGWMRELGLVKVAESLIGDEFTRGLSGGEKRRVSIATELLTSPGIMFLDEPTTGLDSTNAAKVVDILSGLGSIGVTVLLSIHQPRPDIFRLLDRVLVMSSTGGVIYSGPSATAESHFASM 395
BLAST of mRNA_L-elsbetiae_contig5331.13500.1 vs. uniprot
Match: A0A7S0KCW1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KCW1_9CHLO) HSP 1 Score: 211 bits (536), Expect = 1.220e-59 Identity = 111/218 (50.92%), Postives = 154/218 (70.64%), Query Frame = 1 Query: 115 AIMGPSGAGKTSLLNALAGRLPSAGRGGGXXXXXXXGLTGTVRLDGEAVGAARVRTVSAYVTQEDVLPETLTCYEHLMFHAHLRLPAGTSLSRRRDRVMEVMRQLALVDIRDSRIGGDLARGISGGEKRRLSIGTELLTRPALLFADEPTTGLDSSTALRVMQLLSQVASLGTTVVCSVHQPRPEVVRLIDKVIVLS-RGAVAFSGPPSDAGAHFASI 765 AI+GPSGAGKT+LL+ LAGR + G +R++G+ + ++++R +S YVTQ+DVLP T T +EHL+FHA LRLP+GTS R RV M+ L + + DS IG RG+SGGEKRR+SI TELL P ++F DEPTTGLDS+ A +V+ +LS + ++GTTV+ S+HQPRP++ RL+D+V+VLS G+V +SGP + A AHFAS+ Sbjct: 469 AILGPSGAGKTTLLDILAGRATRT-----------HSIRGDIRVNGQPIVSSQIRRLSGYVTQDDVLPGTATVHEHLLFHAKLRLPSGTSSEAIRKRVCATMQILGIEKLADSFIGDQFQRGLSGGEKRRVSIATELLMSPGIMFLDEPTTGLDSTNAAKVVDILSSLGTMGTTVLLSIHQPRPDIFRLLDRVLVLSGEGSVVYSGPSALASAHFASM 675
BLAST of mRNA_L-elsbetiae_contig5331.13500.1 vs. uniprot
Match: A0A7S0KBP1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KBP1_9CHLO) HSP 1 Score: 210 bits (534), Expect = 2.470e-59 Identity = 118/230 (51.30%), Postives = 152/230 (66.09%), Query Frame = 1 Query: 79 GDDADGWEGTVTAIMGPSGAGKTSLLNALAGRLPSAGRGGGXXXXXXXGLTGTVRLDGEAVGAARVRTVSAYVTQEDVLPETLTCYEHLMFHAHLRLPAGTSLSRRRDRVMEVMRQLALVDIRDSRIGGDLARGISGGEKRRLSIGTELLTRPALLFADEPTTGLDSSTALRVMQLLSQVASLGTTVVCSVHQPRPEVVRLIDKVIVLS-RGAVAFSGPPSDAGAHFASI 765 G D G + AIMGPSGAGKT+LL+ L+GRL S G V ++G+ VR++S YV EDVLP T T YEHLMFHA LRLPA TS R RV M+ L + + DS IG RG+SGGEKRR+SI TELL P ++F DEPTTGLDS+ A +V+ +LS + ++GTTV+ S+HQPRP++ RL+D+V+VLS G+V +SGP + A AHFAS+ Sbjct: 459 GGKVDAALGGMCAIMGPSGAGKTTLLDRLSGRLSSK----------VYTTHGNVYINGKLASCEDVRSISGYVIAEDVLPGTATVYEHLMFHAKLRLPASTSSKTIRKRVCATMQILGIEKLADSFIGDQFQRGLSGGEKRRVSIATELLMSPGIMFLDEPTTGLDSTNAAKVVDILSSLGTMGTTVLLSIHQPRPDIFRLLDRVLVLSGEGSVVYSGPSALASAHFASM 678
BLAST of mRNA_L-elsbetiae_contig5331.13500.1 vs. uniprot
Match: C1E9X4_MICCC (ATP-binding cassette superfamily (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E9X4_MICCC) HSP 1 Score: 196 bits (497), Expect = 9.590e-59 Identity = 106/211 (50.24%), Postives = 145/211 (68.72%), Query Frame = 1 Query: 115 AIMGPSGAGKTSLLNALAGRLPSAGRGGGXXXXXXXGLTGTVRLDGEAVGAARVRTVSAYVTQEDVLPETLTCYEHLMFHAHLRLPAGTSLSRRRDRVMEVMRQLALVDIRDSRIGGDLARGISGGEKRRLSIGTELLTRPALLFADEPTTGLDSSTALRVMQLLSQVASLGTTVVCSVHQPRPEVVRLIDKVIVLSR-GAVAFSGPPSDA 744 AI+GPSGAGKT+L++ LAGR PS G + G +R++G A+ +A +R VS YVTQ+DVLP T T +EHL FH LRLP +R + + + M+ L + I S IG + RG+SGGEKRR+SI TELLT P ++F DEPTTGLDS+ A +V+ +LS + S+G TVV S+HQPRP++ RL+D+V+V+S G V +SGP + A Sbjct: 18 AILGPSGAGKTTLIDILAGR-PSVGH----------EVAGELRVNGRAMTSAEMRAVSGYVTQDDVLPGTSTVWEHLTFHGALRLPGNVERARLKAVIWQTMQDLGISKIAHSFIGDEFTRGLSGGEKRRVSIATELLTSPGIMFLDEPTTGLDSTNAAKVVDILSGLGSIGVTVVLSIHQPRPDIFRLLDRVLVMSSTGGVIYSGPSATA 217
BLAST of mRNA_L-elsbetiae_contig5331.13500.1 vs. uniprot
Match: A4S3Q9_OSTLU (ABC(ABCG) family transporter: multidrug (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S3Q9_OSTLU) HSP 1 Score: 202 bits (515), Expect = 1.050e-57 Identity = 113/226 (50.00%), Postives = 149/226 (65.93%), Query Frame = 1 Query: 91 DGWEGTVTAIMGPSGAGKTSLLNALAGRLPSAGRGGGXXXXXXXGLTGTVRLDGEAVGAARVRTVSAYVTQEDVLPETLTCYEHLMFHAHLRLPAGTSLSRRRDRVMEVMRQLALVDIRDSRIGGDLARGISGGEKRRLSIGTELLTRPALLFADEPTTGLDSSTALRVMQLLSQVASLGTTVVCSVHQPRPEVVRLIDKVIVLSR-GAVAFSGPPSDAGAHFASI 765 D G + A+MGPSGAGKT+LL+ L+GRL S G + ++G+ +R VS YV EDVLP T T YEHL+FHA LRLPA T S R RV M+ L + + DS IG RG+SGGEKRR+SI TELL P ++F DEPTTGLDS+ A +V+ +LS + ++GTTV+ S+HQPRP++ RL+D+V+VLS G+V +SGP + A AHF S+ Sbjct: 39 DDVRGGMCALMGPSGAGKTTLLDRLSGRLSS----------NVYDSAGEIFMNGKVASVEDMRAVSGYVIDEDVLPGTATVYEHLLFHAKLRLPAETRQSTIRKRVRATMQILGIEKLADSFIGDQFQRGLSGGEKRRVSIATELLMSPGIMFLDEPTTGLDSTNAAKVVDILSGLGAMGTTVLLSIHQPRPDIFRLLDRVLVLSGDGSVVYSGPSALASAHFNSM 254
BLAST of mRNA_L-elsbetiae_contig5331.13500.1 vs. uniprot
Match: C1E9X3_MICCC (ATP-binding cassette superfamily (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E9X3_MICCC) HSP 1 Score: 201 bits (510), Expect = 1.850e-57 Identity = 113/216 (52.31%), Postives = 146/216 (67.59%), Query Frame = 1 Query: 121 MGPSGAGKTSLLNALAGRLPSAGRGGGXXXXXXXGLTGTVRLDGEAVGAARVRTVSAYVTQEDVLPETLTCYEHLMFHAHLRLPAGTSLSRRRDRVMEVMRQLALVDIRDSRIGGDLARGISGGEKRRLSIGTELLTRPALLFADEPTTGLDSSTALRVMQLLSQVASLGTTVVCSVHQPRPEVVRLIDKVIVLS-RGAVAFSGPPSDAGAHFASI 765 +GPSGAGK++LL+ LAGR P GTVRLDGE V A VR S YV Q DVLP T T +EHLMF+A LRLP T+ S V MR+L LV + +S IG + RG+SGGEKRR+SI TELLT P ++F DEPTTGLDS+ A +V+ +LS ++ G TV+ S+HQPRP++ RL+D+V+VLS +GAV + GP A +HFA++ Sbjct: 1 LGPSGAGKSTLLDFLAGRTPRG-----------QVAHGTVRLDGEVVSAREVRHASGYVQQTDVLPGTSTVWEHLMFNAALRLPPDTARSEMYRVVAGWMRELGLVKVAESLIGDEFTRGLSGGEKRRVSIATELLTSPGIMFLDEPTTGLDSTNAAKVVDILSGLSRAGVTVLLSIHQPRPDIFRLLDRVLVLSGQGAVVYGGPSHRAESHFAAM 205
BLAST of mRNA_L-elsbetiae_contig5331.13500.1 vs. uniprot
Match: A0A7R9Y6A1_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y6A1_MICPS) HSP 1 Score: 205 bits (521), Expect = 3.230e-57 Identity = 111/218 (50.92%), Postives = 148/218 (67.89%), Query Frame = 1 Query: 115 AIMGPSGAGKTSLLNALAGRLPSAGRGGGXXXXXXXGLTGTVRLDGEAVGAARVRTVSAYVTQEDVLPETLTCYEHLMFHAHLRLPAGTSLSRRRDRVMEVMRQLALVDIRDSRIGGDLARGISGGEKRRLSIGTELLTRPALLFADEPTTGLDSSTALRVMQLLSQVASLGTTVVCSVHQPRPEVVRLIDKVIVLSR-GAVAFSGPPSDAGAHFASI 765 AI+GPSGAGKT+LL+ LAGR PS G +TG V LDGE + + +R VS YV Q+DVLP T T +EHLMFHA LRLP R R V + MR L + + + IG RG+SGGEKRR+S+ TELLT P ++F DEPTTGLD++ A +V+ +L+ + +LG T++ S+HQPRP++ RL+D+V+V+S G V +SGP DA AHF S+ Sbjct: 33 AILGPSGAGKTTLLDVLAGR-PSPGH----------VITGDVALDGERMSNSELRHVSGYVPQDDVLPGTSTVWEHLMFHAALRLPGSVDRKRLRSVVWQTMRDLGITKLAHAHIGDAFTRGLSGGEKRRVSVATELLTSPGVMFLDEPTTGLDATNAAKVVDILAGLGALGVTILLSIHQPRPDIFRLLDRVLVMSSDGRVVYSGPSLDAEAHFESM 239 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5331.13500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5331.13500.1 >prot_L-elsbetiae_contig5331.13500.1 ID=prot_L-elsbetiae_contig5331.13500.1|Name=mRNA_L-elsbetiae_contig5331.13500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=286bp ARGADLTEAGLVAASSSSSREGKGAPGDDADGWEGTVTAIMGPSGAGKTSback to top mRNA from alignment at L-elsbetiae_contig5331:6176..8673- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5331.13500.1 ID=mRNA_L-elsbetiae_contig5331.13500.1|Name=mRNA_L-elsbetiae_contig5331.13500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2498bp|location=Sequence derived from alignment at L-elsbetiae_contig5331:6176..8673- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5331:6176..8673- >mRNA_L-elsbetiae_contig5331.13500.1 ID=mRNA_L-elsbetiae_contig5331.13500.1|Name=mRNA_L-elsbetiae_contig5331.13500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1716bp|location=Sequence derived from alignment at L-elsbetiae_contig5331:6176..8673- (Laminarionema elsbetiae ELsaHSoW15)back to top |