mRNA_L-elsbetiae_contig533.13497.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig533.13497.1
Unique NamemRNA_L-elsbetiae_contig533.13497.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig533.13497.1 vs. uniprot
Match: D7FJJ6_ECTSI (Solute carrier family 35 member 3A, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ6_ECTSI)

HSP 1 Score: 412 bits (1060), Expect = 5.040e-140
Identity = 222/277 (80.14%), Postives = 246/277 (88.81%), Query Frame = 2
Query:  329 ESGEMRTFTKKLRVEVAGKPREIAKLMVPALLYTIQNNMLYEALENLDAATYSVCYQSKILTTALFSVFLLRKKLSATKWGALLLLTSGVALAQLSGLSAEDSREAHETAAGQSPILGFMCVMAAACTSGFAGVYFEMLLKGSKTSLWIRNIQMGIPSIVLSIVSVLVKDWKPVTQKGFFHGYNGVVVAVIILQAVGGLVVAVVVKYADNIRKSFATAVSIIISCTLSALLFDFKPTFTFLLGSAMVVGSVFLYTKQDRTARSLPLFSKNRNTTRRV 1159
            ESGE+RTF+KKLRVEVAGKPRE+AKLM+PA+LYT+QNNMLY ALENLDAATYSVCYQ+KILTTALFSV LLR+KLSATKWGAL+LL  GVALAQLS  S  +S +A E++ GQSP++GF+CVM AACTSGFAGVYFEMLLKGSKTSLWIRNIQMGIPSIVL+  SV+VKDW+ VT  GFF GY  VV AVI+LQAVGGLVVAVVVKYADNIRKSFATA+SIIISC LS L F FKPTF F +GSAMVVGSVFLYTKQDR AR LPLF+K R+ TRRV
Sbjct:   62 ESGELRTFSKKLRVEVAGKPREMAKLMIPAMLYTLQNNMLYMALENLDAATYSVCYQTKILTTALFSVILLRRKLSATKWGALVLLAVGVALAQLSSQST-NSPKADESSRGQSPVVGFLCVMGAACTSGFAGVYFEMLLKGSKTSLWIRNIQMGIPSIVLAFGSVIVKDWRAVTSNGFFFGYGWVVAAVIVLQAVGGLVVAVVVKYADNIRKSFATAISIIISCALSTLFFAFKPTFLFFIGSAMVVGSVFLYTKQDRPAR-LPLFNKGRSVTRRV 336          
BLAST of mRNA_L-elsbetiae_contig533.13497.1 vs. uniprot
Match: A0A836C750_9STRA (Nucleotide-sugar transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C750_9STRA)

HSP 1 Score: 278 bits (711), Expect = 1.300e-86
Identity = 160/319 (50.16%), Postives = 211/319 (66.14%), Query Frame = 2
Query:  332 SGEMRTFTKKLRVEVAGKPREIAKLMVPALLYTIQNNMLYEALENLDAATYSVCYQSKILTTALFSVFLLRKKLSATKWGALLLLTSGVALAQLSGLSAEDSREAHE---------TAAG---------------------------------QSPILGFMCVMAAACTSGFAGVYFEMLLKGSKTSLWIRNIQMGIPSIVLSIVSVLVKDWKPVTQKGFFHGYNGVVVAVIILQAVGGLVVAVVVKYADNIRKSFATAVSIIISCTLSALLFDFKPTFTFLLGSAMVVGSVFLYTKQD--------RTARSLPLFSKN 1138
            SG  + F + +++E+  KP E+ KL +P+ LY +QNN+LYEAL NLD ATYSVCYQ KI+TTALFSV LL+K+LS  KW AL+LLT GVALA+L+  +A  + +A           TAA                                  Q  +LGF+CV+AA CTSGFAGV+FEM+LKG+KTSLWIRN+QMG+PSI+ ++ S   KD   +  +GFF+GY G+V  VI+LQAVGGL+VAVVVKYADNI K+FA+AVSI+ SC LSALLF F+P+  F++G+ +V  SVFLY+K D         + ++LPLF  +
Sbjct:   61 SGGYKPFLRTMKIEIVNKPAELGKLALPSFLYMVQNNLLYEALSNLDPATYSVCYQLKIMTTALFSVILLKKRLSPLKWMALVLLTLGVALAELATHAAPKAADADAPPEPMLPLPTAAPDLDSGSAIGNPLQRRLQEDGEAAALGGFEELKMQRQLLGFLCVLAATCTSGFAGVWFEMILKGAKTSLWIRNVQMGLPSILFALASCYTKDLALLRDRGFFYGYTGIVWGVIVLQAVGGLMVAVVVKYADNILKAFASAVSIVTSCLLSALLFGFRPSPVFMVGTLLVSVSVFLYSKPDGVKPLKAQASKQNLPLFDSH 379          
BLAST of mRNA_L-elsbetiae_contig533.13497.1 vs. uniprot
Match: A0A7S2U9J9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9J9_9STRA)

HSP 1 Score: 268 bits (686), Expect = 6.580e-83
Identity = 137/247 (55.47%), Postives = 185/247 (74.90%), Query Frame = 2
Query:  386 PREIAKLMVPALLYTIQNNMLYEALENLDAATYSVCYQSKILTTALFSVFLLRKKLSATKWGALLLLTSGVALAQLSGLSAEDSREAHETAAGQSPILGFMCVMAAACTSGFAGVYFEMLLKGSKTSLWIRNIQMGIPSIVLSIVSVLVKDWKPVTQKGFFHGYNGVVVAVIILQAVGGLVVAVVVKYADNIRKSFATAVSIIISCTLSALLFDFKPTFTFLLGSAMVVGSVFLYTKQDRTARSLPL 1126
            P E+ KL VP+LLYT+QNN+LY AL NLDAATY VCYQ KILTTALFS  LL++  S  KW +L++LT GVA+ QLSG   +    A E  A ++ ++G + V+ AACTSGFAGVYFE +LKGS T+LW+RNIQMG+PS++++ + V +KD   + +KGFF GY  +V  V+ +QAVGGL+VAVVVKYADN+ K FAT+ SIIISC +SA++FDF+P F F+ G+++V+ S  +Y++ D   R  P+
Sbjct:  120 PFEVLKLCVPSLLYTVQNNLLYLALTNLDAATYQVCYQLKILTTALFSATLLQRSFSRLKWMSLVILTIGVAIVQLSGSGDKHHHVASEDEASRNRMVGLVAVLCAACTSGFAGVYFERILKGSSTTLWLRNIQMGLPSVIIAYIGVYMKDSMIIAEKGFFVGYTPLVWTVVTVQAVGGLIVAVVVKYADNVLKVFATSFSIIISCIISAVVFDFRPNFLFVCGASLVMASTVMYSRPDTRRRKKPI 366          
BLAST of mRNA_L-elsbetiae_contig533.13497.1 vs. uniprot
Match: B7FYG7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYG7_PHATC)

HSP 1 Score: 262 bits (670), Expect = 4.170e-81
Identity = 145/274 (52.92%), Postives = 196/274 (71.53%), Query Frame = 2
Query:  380 GKPREIAKLMVPALLYTIQNNMLYEALENLDAATYSVCYQSKILTTALFSVFLLRKKLSATKWGALLLLTSGVALAQLSGL----SAEDSREAHE-------TAAGQSPILGFMCVMAAACTSGFAGVYFEMLLKGSKTSLWIRNIQMGIPSIVLSIVSVLVKDWKPVTQKGFFHGYNGVVVAVIILQAVGGLVVAVVVKYADNIRKSFATAVSIIISCTLSALLFDFKPTFTFLLGSAMVVGSVFLY------TKQDRTARSLPLFSKNRNTT 1150
            G P E+ KL VP+LLYT+QNN+LY AL NLDAATY VCYQ KILTTALFS  LL++K S  KW +L++LT GVA+ QLSG     S +DS+ A +       TAA  +  +G + V+ AACTSGF+GVYFE +LKGS+TSLWIRN+QMG+ SIV++ ++V VKD + +  +GF+ GYN +V  V+ +QAVGGL+VA VVKYADN+ K FAT+ SI++SC +SA LFDF P+ +FL+G+++VV +  +Y      T++ R    LP+  +N   T
Sbjct:   61 GSPLELLKLTVPSLLYTVQNNLLYLALTNLDAATYQVCYQLKILTTALFSALLLQRKFSTMKWLSLVVLTIGVAIVQLSGSGDQHSEQDSKAATDAVDDTNGTAAAHTRWVGLVAVLCAACTSGFSGVYFEKILKGSRTSLWIRNVQMGLSSIVIAYLTVYVKDAEAIRTQGFWGGYNTLVWTVVTVQAVGGLIVATVVKYADNVLKVFATSFSIVVSCIVSAFLFDFHPSVSFLVGASLVVTATVMYSSPETRTRKTRRRPVLPIHHRNNTAT 334          
BLAST of mRNA_L-elsbetiae_contig533.13497.1 vs. uniprot
Match: A0A1E7F618_9STRA (UDP-N-acetylglucosamine transporter-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F618_9STRA)

HSP 1 Score: 259 bits (663), Expect = 2.070e-80
Identity = 136/259 (52.51%), Postives = 187/259 (72.20%), Query Frame = 2
Query:  362 LRVEVAGKPREIAKLMVPALLYTIQNNMLYEALENLDAATYSVCYQSKILTTALFSVFLLRKKLSATKWGALLLLTSGVALAQLSGLSAEDSREAHETAAGQSPILGFMCVMAAACTSGFAGVYFEMLLKGSKTSLWIRNIQMGIPSIVLSIVSVLVKDWKPVTQKGFFHGYNGVVVAVIILQAVGGLVVAVVVKYADNIRKSFATAVSIIISCTLSALLFDFKPTFTFLLGSAMVVGSVFLYTKQDRTARSLPLFSKN 1138
            L   V   P E+ KL VP+ LYT+QNN+LY AL NLDAATY VCYQ KILTTA+FS+ LL++K S  KW AL+LLT GV++ Q+SG S + S+   E     S  +G + V+ AACTSGF+GVYFE +LKG+ TSLW+RN+QMGIPS++++ +++  KD   V+++GF  GY  +V  V+ +QAVGGL+VAVVVKYADN+ K FAT+ SI++SC LSA+ FDF  +F F+ G+++VV S  LY + +R  R  P+  ++
Sbjct:   55 LNEHVMQSPIEMMKLTVPSFLYTVQNNLLYFALTNLDAATYQVCYQLKILTTAVFSMILLQRKFSPKKWAALVLLTVGVSIVQISG-SRDSSKSETEK---HSQFIGLIAVLCAACTSGFSGVYFEKILKGATTSLWLRNVQMGIPSVIIAFITIYAKDGAAVSRQGFLGGYTPLVWTVVTVQAVGGLIVAVVVKYADNVLKVFATSFSIVVSCVLSAIFFDFHASFAFIAGASLVVMSTALYAQPERKRRRKPILPES 309          
BLAST of mRNA_L-elsbetiae_contig533.13497.1 vs. uniprot
Match: A0A7S3L616_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L616_9STRA)

HSP 1 Score: 263 bits (672), Expect = 2.150e-80
Identity = 139/254 (54.72%), Postives = 185/254 (72.83%), Query Frame = 2
Query:  362 LRVEVAGKPREIAKLMVPALLYTIQNNMLYEALENLDAATYSVCYQSKILTTALFSVFLLRKKLSATKWGALLLLTSGVALAQLSGLSAEDS------REAHETAAGQSPILGFMCVMAAACTSGFAGVYFEMLLKGSKTSLWIRNIQMGIPSIVLSIVSVLVKDWKPVTQKGFFHGYNGVVVAVIILQAVGGLVVAVVVKYADNIRKSFATAVSIIISCTLSALLFDFKPTFTFLLGSAMVVGSVFLYTKQDR 1105
            L   V   P EI KL VP+LLYT+QNN+LY AL NLDAATY VCYQ KILTTALFS  +L++K S  KW AL++LT GVA+ Q+SG   + S             A Q+ ++G + V+ AACTSGF+GVYFE +LKGS+TSLWIRNIQMG+PS+V++ ++V VKD   V Q+GFF GYN +V  V+ +QA+GGL+VA VVKYADN+ K FAT+ SI++SC +SA LFDF P++ FL G+++VV +  +Y+  ++
Sbjct:  144 LHQHVIQSPMEILKLTVPSLLYTVQNNLLYLALTNLDAATYQVCYQLKILTTALFSAVMLQRKFSGQKWFALVVLTVGVAVVQVSGSGDQHSDXXXXXXXPSNQEAPQNRVVGLVAVLCAACTSGFSGVYFEKILKGSRTSLWIRNIQMGLPSVVIAYIAVCVKDAAAVRQQGFFGGYNNIVWTVVAVQAIGGLIVATVVKYADNVLKVFATSFSIVLSCIISAFLFDFHPSWMFLCGASLVVTATVMYSSPEK 397          
BLAST of mRNA_L-elsbetiae_contig533.13497.1 vs. uniprot
Match: A0A7S2VC43_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VC43_9STRA)

HSP 1 Score: 257 bits (656), Expect = 4.760e-79
Identity = 138/267 (51.69%), Postives = 186/267 (69.66%), Query Frame = 2
Query:  356 KKLRVEVAGKPREIAKLMVPALLYTIQNNMLYEALENLDAATYSVCYQSKILTTALFSVFLLRKKLSATKWGALLLLTSGVALAQLSGLSAEDSREAHETAAGQ------------------SPILGFMCVMAAACTSGFAGVYFEMLLKGSKTSLWIRNIQMGIPSIVLSIVSVLVKDWKPVTQKGFFHGYNGVVVAVIILQAVGGLVVAVVVKYADNIRKSFATAVSIIISCTLSALLFDFKPTFTFLLGSAMVVGSVFLYTKQD 1102
            ++L + V   P EIAKL +P+LLYTIQNN+LY AL NLDAATY VCYQ KILTTALFS  LL++K S  KW +L++LT GVA+ Q+SG   + +  AH                        + ++G + V+ AACTSGF+GVYFE +LKGS+TSLWIRNIQMG+PSI+++ ++V VKD   V  +GF  GY+ +V  V+ +QAVGGL+VA VVKYADN+ K FAT+ SI++SC +SA LFDF PT+ FL G+++VV +  +Y+  +
Sbjct:   37 RELYLHVVQSPMEIAKLTIPSLLYTIQNNLLYLALTNLDAATYQVCYQLKILTTALFSALLLQRKFSGQKWMSLIVLTVGVAIVQISGSGDQHTTNAHXXXXXXXXXXXXXXXXXXXXXXXXNRVIGLIAVLCAACTSGFSGVYFEKILKGSRTSLWIRNIQMGLPSILIAYITVYVKDAPAVQTQGFLGGYSSLVWTVVTVQAVGGLIVATVVKYADNVLKVFATSFSIVVSCIISAFLFDFHPTWMFLCGASLVVTATVMYSSPE 303          
BLAST of mRNA_L-elsbetiae_contig533.13497.1 vs. uniprot
Match: A0A7S4SDY4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SDY4_9STRA)

HSP 1 Score: 259 bits (662), Expect = 5.020e-79
Identity = 139/258 (53.88%), Postives = 183/258 (70.93%), Query Frame = 2
Query:  386 PREIAKLMVPALLYTIQNNMLYEALENLDAATYSVCYQSKILTTALFSVFLLRKKLSATKWGALLLLTSGVALAQLSGLSAEDSREAHETAAGQSPILGFMCVMAAACTSGFAGVYFEMLLKGSKTSLWIRNIQMGIPSIVLSIVSVLVKDWKPVTQKGFFHGYNGVVVAVIILQAVGGLVVAVVVKYADNIRKSFATAVSIIISCTLSALLFDFKPTFTFLLGSAMVVGSVFLYTKQDRTARSLPLFSKNRNTTRRV 1159
            P E+ KL VP+LLY +QNN+LY AL NLDAATY VCYQ KILTTA+FS  LL++  S TKW +L++LT+GVA+ Q SG S + S      +  Q+  +G + V+ AACTSGF+GVYFE +LKGSKTSLWIRNIQMG  SI +S++ V ++D   V+ KGFF GY+ +V  V+ +QA GGL+VAVVVKYADN+ K+FA + SII SC +S++LFDF+P   FL G+A+VV S  LY+  D+  R       N+    +V
Sbjct:  143 PFEVLKLCVPSLLYAVQNNLLYIALTNLDAATYQVCYQLKILTTAIFSAILLKRTFSCTKWFSLIILTAGVAIVQTSGSSDKSSSSDANVSINQNRFVGTVAVLCAACTSGFSGVYFEKILKGSKTSLWIRNIQMGFSSIFISLIMVFLQDLAAVSTKGFFVGYSPLVWLVVTIQAAGGLIVAVVVKYADNVLKTFAASFSIIASCIVSSVLFDFQPNKMFLAGAALVVSSTVLYSWPDQGDRKTKRHILNKTPAAKV 400          
BLAST of mRNA_L-elsbetiae_contig533.13497.1 vs. uniprot
Match: A0A7S3PWM7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWM7_9STRA)

HSP 1 Score: 252 bits (644), Expect = 1.330e-76
Identity = 135/251 (53.78%), Postives = 182/251 (72.51%), Query Frame = 2
Query:  362 LRVEVAGKPREIAKLMVPALLYTIQNNMLYEALENLDAATYSVCYQSKILTTALFSVFLLRKKLSATKWGALLLLTSGVALAQLSGLSAEDSREAHETAAGQSPILGFMCVMAAACTSGFAGVYFEMLLKGSKTSLWIRNIQMGIPSIVLSIVSVLVKDWKPVTQKGFFHGYNGVVVAVIILQAVGGLVVAVVVKYADNIRKSFATAVSIIISCTLSALLFDFKPTFTFLLGSAMVVGSVFLYTKQDRTAR 1114
            L   V   P E+ K+ VP+ LY IQNN+LY AL NLDAATY VCYQ KILTTALFS  +L +  S TKW AL++LT GVA+ Q SG SA      H   + Q+  LG   ++ AACTSGF+GVYFE +LKGS TSLW+RNIQMG+PS++L++++V ++D + + +KGFF GY+  V  V+++QAVGGL+VAVVVKYADN+ K+FA++  I+ISC +SA+LF  K    FL+G+++VV S  LY+K ++  R
Sbjct:  131 LTTHVWNSPFEVIKISVPSFLYVIQNNLLYLALTNLDAATYQVCYQLKILTTALFSATMLNRTFSKTKWLALVILTIGVAVVQTSGNSAS-----HSENSDQNRSLGLFAILCAACTSGFSGVYFEKMLKGSSTSLWMRNIQMGLPSMLLALMTVFIQDGRIIREKGFFVGYSTTVWTVVVVQAVGGLIVAVVVKYADNVLKTFASSFGIVISCLMSAILFGQKYNAAFLVGASLVVLSTVLYSKPEKRQR 376          
BLAST of mRNA_L-elsbetiae_contig533.13497.1 vs. uniprot
Match: B8CBK0_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBK0_THAPS)

HSP 1 Score: 248 bits (633), Expect = 3.710e-76
Identity = 130/239 (54.39%), Postives = 183/239 (76.57%), Query Frame = 2
Query:  374 VAGKPREIAKLMVPALLYTIQNNMLYEALENLDAATYSVCYQSKILTTALFSVFLLRKKLSATKWGALLLLTSGVALAQLSGLSAEDSREAHETAAGQSPILGFMCVMAAACTSGFAGVYFEMLLKGSKTSLWIRNIQMGIPSIVLSIVSVLVKDWKPVTQKGFFHGYNGVVVAVIILQAVGGLVVAVVVKYADNIRKSFATAVSIIISCTLSALLFDFKPTFTFLLGSAMVVGSVFLY 1090
            V   P E+ KL VP+LLYT+QNN+LY AL NLDAATY + YQ KILTTALFS  +L ++ SATKW +L++LT+GVA+ Q+SG S +     +E    ++  +G + V+ A+CTSGF+GVYFE +LKGS+T+LW+RNIQMGIPS+++++V+V + D + V++KGFF GY+ +V+ VI +QAVGGL+VAVVVKYADN+ K FA++ SI+ SC +SA  FDF+P   FL+G+ +V+ S  +Y
Sbjct:   60 VCASPDEMLKLCVPSLLYTVQNNLLYLALTNLDAATYQILYQLKILTTALFSATMLGRQFSATKWCSLVVLTAGVAVVQVSG-SGDSHANGNED---RNRFVGLVAVLCASCTSGFSGVYFEKILKGSETTLWVRNIQMGIPSMIIALVTVFLGDSEEVSRKGFFVGYSPLVITVITVQAVGGLIVAVVVKYADNVLKVFASSFSILFSCIISAFAFDFRPNVLFLVGAFLVILSTAMY 294          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig533.13497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJJ6_ECTSI5.040e-14080.14Solute carrier family 35 member 3A, partial n=1 Ta... [more]
A0A836C750_9STRA1.300e-8650.16Nucleotide-sugar transporter-domain-containing pro... [more]
A0A7S2U9J9_9STRA6.580e-8355.47Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B7FYG7_PHATC4.170e-8152.92Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1E7F618_9STRA2.070e-8052.51UDP-N-acetylglucosamine transporter-like protein n... [more]
A0A7S3L616_9STRA2.150e-8054.72Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2VC43_9STRA4.760e-7951.69Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S4SDY4_9STRA5.020e-7953.88Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3PWM7_9STRA1.330e-7653.78Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
B8CBK0_THAPS3.710e-7654.39Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig533contigL-elsbetiae_contig533:16368..17661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score407.5
Seed ortholog evalue4.8e-111
Seed eggNOG ortholog2880.D7FJJ6
KEGG koko:K15272
KEGG TC2.A.7.12
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pyrimidine nucleotide-sugar transmembrane transporter activity
EggNOG OGsCOG0697@1,KOG2234@2759
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Ec32 ortholog descriptionUDP-galactose transporter
Ec32 orthologEc-04_006360.1
Exons1
Model size1294
Cds size822
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig533.13497.1prot_L-elsbetiae_contig533.13497.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig533 16708..17529 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816552.7418199-UTR-L-elsbetiae_contig533:16367..167071622816552.7418199-UTR-L-elsbetiae_contig533:16367..16707Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig533 16368..16707 +
1691683642.398492-UTR-L-elsbetiae_contig533:16367..167071691683642.398492-UTR-L-elsbetiae_contig533:16367..16707Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig533 16368..16707 +
1622816552.765355-UTR-L-elsbetiae_contig533:17529..176611622816552.765355-UTR-L-elsbetiae_contig533:17529..17661Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig533 17530..17661 +
1691683642.4294562-UTR-L-elsbetiae_contig533:17529..176611691683642.4294562-UTR-L-elsbetiae_contig533:17529..17661Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig533 17530..17661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816552.7543101-CDS-L-elsbetiae_contig533:16707..175291622816552.7543101-CDS-L-elsbetiae_contig533:16707..17529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig533 16708..17529 +
1691683642.4182613-CDS-L-elsbetiae_contig533:16707..175291691683642.4182613-CDS-L-elsbetiae_contig533:16707..17529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig533 16708..17529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig533.13497.1

>prot_L-elsbetiae_contig533.13497.1 ID=prot_L-elsbetiae_contig533.13497.1|Name=mRNA_L-elsbetiae_contig533.13497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=274bp
MRTFTKKLRVEVAGKPREIAKLMVPALLYTIQNNMLYEALENLDAATYSV
CYQSKILTTALFSVFLLRKKLSATKWGALLLLTSGVALAQLSGLSAEDSR
EAHETAAGQSPILGFMCVMAAACTSGFAGVYFEMLLKGSKTSLWIRNIQM
GIPSIVLSIVSVLVKDWKPVTQKGFFHGYNGVVVAVIILQAVGGLVVAVV
VKYADNIRKSFATAVSIIISCTLSALLFDFKPTFTFLLGSAMVVGSVFLY
TKQDRTARSLPLFSKNRNTTRRV*
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mRNA from alignment at L-elsbetiae_contig533:16368..17661+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig533.13497.1 ID=mRNA_L-elsbetiae_contig533.13497.1|Name=mRNA_L-elsbetiae_contig533.13497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1294bp|location=Sequence derived from alignment at L-elsbetiae_contig533:16368..17661+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCAGTGGTCATACGTTCTTCTATCAATTTGGTCATTCGATCTTCTATC AAATTACACATGTACTTCTAGTAAATATTTCTAGTAAATAGAAGTAGTAG TCTACAATTAGCAACCTCCGGTATCGGCGATATGCCCGTTCGCACGTGGG CTGTTCCGTAGACGCCACTGCTGTAAAATCGTCGTATATATAAATTGTAG TTATACTCACTACGTAAGTATGTTTACACAGTTGAATGCTTGGGGGGCAA AACGATGATATTCCACAACGCTGCGCCCTTGGGTAGATTTTGTGCAATCA AGCCTTCACCCGTTATTGCACACGACAGGAGTCGGGAGAAATGAGGACGT TCACGAAGAAGCTGCGTGTGGAGGTTGCTGGGAAGCCACGGGAGATTGCC AAGCTCATGGTCCCAGCACTACTATACACCATCCAGAACAACATGTTGTA CGAGGCCCTGGAGAACCTCGATGCCGCCACGTACAGCGTGTGCTATCAAA GCAAAATCCTCACCACCGCGCTGTTCTCTGTGTTCCTTTTACGGAAGAAG CTGAGTGCCACAAAATGGGGAGCCTTGTTACTGCTCACCTCGGGCGTTGC CCTGGCCCAACTGTCAGGCCTGTCGGCGGAAGACAGCCGTGAGGCCCATG AAACTGCTGCAGGGCAATCTCCGATTCTCGGTTTCATGTGCGTGATGGCG GCAGCATGTACATCCGGATTTGCAGGGGTATACTTTGAAATGCTTCTCAA GGGAAGCAAGACGTCCTTGTGGATCAGAAATATCCAAATGGGCATCCCAA GTATCGTGCTTTCTATTGTCAGCGTCCTTGTCAAGGATTGGAAACCGGTG ACGCAGAAAGGTTTTTTCCACGGATACAACGGGGTGGTTGTTGCAGTGAT TATTTTGCAAGCGGTAGGGGGGCTGGTGGTTGCTGTCGTGGTGAAGTATG CCGACAATATACGGAAGTCATTTGCGACTGCGGTGTCGATTATTATATCC TGTACGTTGTCCGCGCTTCTGTTCGACTTTAAGCCAACCTTTACTTTTTT GCTTGGCTCCGCTATGGTTGTTGGAAGTGTGTTTCTATACACGAAGCAAG ACCGAACCGCTAGGAGTTTACCCCTTTTCAGCAAAAATAGAAATACAACG AGACGCGTGTAACGTGTTTTTGTGGACAAAGGGAGAATGCGTTGGCGCCC AATAAATATGCACTCAACGGTTATTTTGGGGTTGCGAACAAAAAAGTATA AACTATTAAAAGGTAATTTTGGCGTTGAGTACGATATTAAACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig533:16368..17661+

>mRNA_L-elsbetiae_contig533.13497.1 ID=mRNA_L-elsbetiae_contig533.13497.1|Name=mRNA_L-elsbetiae_contig533.13497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1644bp|location=Sequence derived from alignment at L-elsbetiae_contig533:16368..17661+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGACGTTCACGAAGAAGCTGCGTGTGGAGGTTGCTGGGAAGCCACG
GGAGATTGCCAAGCTCATGGTCCCAGCACTACTATACACCATCCAGAACA
ACATGTTGTACGAGGCCCTGGAGAACCTCGATGCCGCCACGTACAGCGTG
TGCTATCAAAGCAAAATCCTCACCACCGCGCTGTTCTCTGTGTTCCTTTT
ACGGAAGAAGCTGAGTGCCACAAAATGGGGAGCCTTGTTACTGCTCACCT
CGGGCGTTGCCCTGGCCCAACTGTCAGGCCTGTCGGCGGAAGACAGCCGT
GAGGCCCATGAAACTGCTGCAGGGCAATCTCCGATTCTCGGTTTCATGTG
CGTGATGGCGGCAGCATGTACATCCGGATTTGCAGGGGTATACTTTGAAA
TGCTTCTCAAGGGAAGCAAGACGTCCTTGTGGATCAGAAATATCCAAATG
GGCATCCCAAGTATCGTGCTTTCTATTGTCAGCGTCCTTGTCAAGGATTG
GAAACCGGTGACGCAGAAAGGTTTTTTCCACGGATACAACGGGGTGGTTG
TTGCAGTGATTATTTTGCAAGCGGTAGGGGGGCTGGTGGTTGCTGTCGTG
GTGAAGTATGCCGACAATATACGGAAGTCATTTGCGACTGCGGTGTCGAT
TATTATATCCTGTACGTTGTCCGCGCTTCTGTTCGACTTTAAGCCAACCT
TTACTTTTTTGCTTGGCTCCGCTATGGTTGTTGGAAGTGTGTTTCTATAC
ACGAAGCAAGACCGAACCGCTAGGAGTTTACCCCTTTTCAGCAAAAATAG
AAATACAACGAGACGCGTGTAAATGAGGACGTTCACGAAGAAGCTGCGTG
TGGAGGTTGCTGGGAAGCCACGGGAGATTGCCAAGCTCATGGTCCCAGCA
CTACTATACACCATCCAGAACAACATGTTGTACGAGGCCCTGGAGAACCT
CGATGCCGCCACGTACAGCGTGTGCTATCAAAGCAAAATCCTCACCACCG
CGCTGTTCTCTGTGTTCCTTTTACGGAAGAAGCTGAGTGCCACAAAATGG
GGAGCCTTGTTACTGCTCACCTCGGGCGTTGCCCTGGCCCAACTGTCAGG
CCTGTCGGCGGAAGACAGCCGTGAGGCCCATGAAACTGCTGCAGGGCAAT
CTCCGATTCTCGGTTTCATGTGCGTGATGGCGGCAGCATGTACATCCGGA
TTTGCAGGGGTATACTTTGAAATGCTTCTCAAGGGAAGCAAGACGTCCTT
GTGGATCAGAAATATCCAAATGGGCATCCCAAGTATCGTGCTTTCTATTG
TCAGCGTCCTTGTCAAGGATTGGAAACCGGTGACGCAGAAAGGTTTTTTC
CACGGATACAACGGGGTGGTTGTTGCAGTGATTATTTTGCAAGCGGTAGG
GGGGCTGGTGGTTGCTGTCGTGGTGAAGTATGCCGACAATATACGGAAGT
CATTTGCGACTGCGGTGTCGATTATTATATCCTGTACGTTGTCCGCGCTT
CTGTTCGACTTTAAGCCAACCTTTACTTTTTTGCTTGGCTCCGCTATGGT
TGTTGGAAGTGTGTTTCTATACACGAAGCAAGACCGAACCGCTAGGAGTT
TACCCCTTTTCAGCAAAAATAGAAATACAACGAGACGCGTGTAA
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