mRNA_L-elsbetiae_contig529.13430.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig529.13430.1
Unique NamemRNA_L-elsbetiae_contig529.13430.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig529.13430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig529contigL-elsbetiae_contig529:18948..19281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size336
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.415105-CDS-L-elsbetiae_contig529:18947..192471622816546.415105-CDS-L-elsbetiae_contig529:18947..19247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig529 18948..19247 +
1691683637.8247721-CDS-L-elsbetiae_contig529:18947..192471691683637.8247721-CDS-L-elsbetiae_contig529:18947..19247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig529 18948..19247 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.430099-UTR-L-elsbetiae_contig529:19247..192811622816546.430099-UTR-L-elsbetiae_contig529:19247..19281Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig529 19248..19281 +
1691683637.8369668-UTR-L-elsbetiae_contig529:19247..192811691683637.8369668-UTR-L-elsbetiae_contig529:19247..19281Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig529 19248..19281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig529.13430.1prot_L-elsbetiae_contig529.13430.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig529 18948..19247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig529.13430.1

>prot_L-elsbetiae_contig529.13430.1 ID=prot_L-elsbetiae_contig529.13430.1|Name=mRNA_L-elsbetiae_contig529.13430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
EGPTQTPFLAGQRVLAVRCLFLVLGALLCSRCHRPAAAAAAAAAAVQNAF
FSLLSLGRFVLCLLVGAELSRPFRFSDFCIVRSEKKRENERETLFNTVN*
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mRNA from alignment at L-elsbetiae_contig529:18948..19281+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig529.13430.1 ID=mRNA_L-elsbetiae_contig529.13430.1|Name=mRNA_L-elsbetiae_contig529.13430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=334bp|location=Sequence derived from alignment at L-elsbetiae_contig529:18948..19281+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGGGCCGACGCAAACCCCTTTTTTGGCTGGACAGCGGGTCCTGGCTGT
TCGTTGTTTATTTTTAGTTTTGGGGGCTCTGCTCTGCTCTCGATGCCATC
GCCCCGCGGCGGCTGCTGCTGCTGCTGCCGCTGCTGTTCAAAACGCCTTC
TTTAGTCTCTTGTCGCTTGGTCGCTTTGTTTTGTGCCTATTGGTTGGAGC
TGAGCTCTCAAGGCCTTTTCGTTTTTCTGATTTTTGTATTGTGAGGAGCG
AAAAAAAAAGGGAAAACGAACGCGAAACGCTCTTCAATACGGTGAATTGA
ATTTTTGACCCTTTCACACTAGTATGCACACCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig529:18948..19281+

>mRNA_L-elsbetiae_contig529.13430.1 ID=mRNA_L-elsbetiae_contig529.13430.1|Name=mRNA_L-elsbetiae_contig529.13430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig529:18948..19281+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGGGCCGACGCAAACCCCTTTTTTGGCTGGACAGCGGGTCCTGGCTGT
TCGTTGTTTATTTTTAGTTTTGGGGGCTCTGCTCTGCTCTCGATGCCATC
GCCCCGCGGCGGCTGCTGCTGCTGCTGCCGCTGCTGTTCAAAACGCCTTC
TTTAGTCTCTTGTCGCTTGGTCGCTTTGTTTTGTGCCTATTGGTTGGAGC
TGAGCTCTCAAGGCCTTTTCGTTTTTCTGATTTTTGTATTGTGAGGAGCG
AAAAAAAAAGGGAAAACGAACGCGAAACGCTCTTCAATACGGTGAATTGA
GAGGGGCCGACGCAAACCCCTTTTTTGGCTGGACAGCGGGTCCTGGCTGT
TCGTTGTTTATTTTTAGTTTTGGGGGCTCTGCTCTGCTCTCGATGCCATC
GCCCCGCGGCGGCTGCTGCTGCTGCTGCCGCTGCTGTTCAAAACGCCTTC
TTTAGTCTCTTGTCGCTTGGTCGCTTTGTTTTGTGCCTATTGGTTGGAGC
TGAGCTCTCAAGGCCTTTTCGTTTTTCTGATTTTTGTATTGTGAGGAGCG
AAAAAAAAAGGGAAAACGAACGCGAAACGCTCTTCAATACGGTGAATTGA
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