Homology
BLAST of mRNA_L-elsbetiae_contig529.13428.1 vs. uniprot
Match:
A0A6H5KVK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK7_9PHAE)
HSP 1 Score: 71.6 bits (174), Expect = 1.250e-10
Identity = 40/56 (71.43%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 466 SGGAGTGAGREAATEAMRGPLVEALHQIAQLPFSAAELWSLHQFYFSPP-EAHPRP 630
SGG GT A EA+R LVEALHQIAQLPFSAAELWSLHQ YFSPP + HP P
Sbjct: 799 SGGDGTERAAAAVPEALRASLVEALHQIAQLPFSAAELWSLHQHYFSPPLDHHPSP 854
BLAST of mRNA_L-elsbetiae_contig529.13428.1 vs. uniprot
Match:
D7FK51_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK51_ECTSI)
HSP 1 Score: 68.6 bits (166), Expect = 1.340e-9
Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = 1
Query: 499 AATEAMRGPLVEALHQIAQLPFSAAELWSLHQFYFSPP-EAHPRP 630
A EA+R LVEALHQIAQLPFSAAELWSLHQ YFSPP + HP P
Sbjct: 662 AVPEALRASLVEALHQIAQLPFSAAELWSLHQHYFSPPLDHHPSP 706
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig529.13428.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.25e-10 / Id = 71.43 Expect = 1.34e-9 / Id = 77.78 Sequence A0A6H5KVK7_9PHAE D7FK51_ECTSI
Match Name E-value Identity Description
A0A6H5KVK7_9PHAE 1.250e-10 71.43 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK51_ECTSI 1.340e-9 77.78 Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 68.6
Seed ortholog evalue 4.7e-09
Seed eggNOG ortholog 2880.D7FK51
KEGG ko ko:K20523,ko:K20865
KEGG Pathway ko04621,map04621
Hectar predicted targeting category other localisation
EggNOG free text desc. interleukin-8 biosynthetic process
EggNOG OGs KOG4308@1,KOG4308@2759
COG Functional cat. S
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
BRITE ko00000,ko00001,ko04131
Exons 2
Model size 733
Cds size 729
Stop 0
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816546.2973156-CDS-L-elsbetiae_contig529:15762..16317 1622816546.2973156-CDS-L-elsbetiae_contig529:15762..16317 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig529 15763..16317 +
1691683637.7526546-CDS-L-elsbetiae_contig529:15762..16317 1691683637.7526546-CDS-L-elsbetiae_contig529:15762..16317 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig529 15763..16317 +
1622816546.309068-CDS-L-elsbetiae_contig529:16775..16949 1622816546.309068-CDS-L-elsbetiae_contig529:16775..16949 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig529 16776..16949 +
1691683637.7642908-CDS-L-elsbetiae_contig529:16775..16949 1691683637.7642908-CDS-L-elsbetiae_contig529:16775..16949 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig529 16776..16949 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig529.13428.1
>prot_L-elsbetiae_contig529.13428.1 ID=prot_L-elsbetiae_contig529.13428.1|Name=mRNA_L-elsbetiae_contig529.13428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
AAAAVAEEEKEQGGNISNRNGGRIGDRIGGGAGKDLSGVAASNGIPVQQM QQRRQQQQQTGGRGGGGGAPIAVTKDAPPTQHHQHMRPNTSPQAAPVAGI GLREVAQSAPVGSGGGSDGSASERKVHGRGHAASEHVPAANPEGDGRVVG RRRSGSGGAGTGAGREAATEAMRGPLVEALHQIAQLPFSAAELWSLHQFY FSPPEAHPRPSPSPASAASTPSPSAANATGGSWTAAAAAGTAA back to top mRNA from alignment at L-elsbetiae_contig529:15763..16951+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig529.13428.1 ID=mRNA_L-elsbetiae_contig529.13428.1|Name=mRNA_L-elsbetiae_contig529.13428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1189bp|location=Sequence derived from alignment at L-elsbetiae_contig529:15763..16951+ (Laminarionema elsbetiae ELsaHSoW15)GCGGCGGCGGCGGTGGCGGAAGAGGAAAAGGAGCAAGGGGGCAACATTAG
CAACCGCAACGGCGGTAGGATTGGCGATAGGATAGGTGGCGGGGCGGGCA
AGGACTTGTCGGGCGTGGCAGCCAGCAACGGGATTCCGGTTCAACAGATG
CAGCAGCGGAGGCAGCAGCAGCAACAGACTGGAGGAAGAGGAGGAGGGGG
GGGGGCTCCTATCGCCGTGACCAAAGACGCGCCCCCAACCCAGCACCACC
AGCACATGCGGCCGAATACGAGCCCCCAAGCTGCGCCGGTCGCCGGGATA
GGTTTGAGGGAGGTGGCACAAAGCGCACCAGTTGGCAGCGGTGGCGGCAG
CGACGGCTCGGCGAGTGAACGGAAGGTTCACGGCCGCGGGCACGCGGCGT
CGGAGCACGTGCCTGCCGCAAATCCCGAGGGAGACGGTCGAGTAGTGGGT
CGACGCCGAAGCGGTAGTGGCGGCGCCGGCACCGGGGCTGGTCGGGAGGC
GGCGACGGAAGCGATGCGAGGGCCGCTGGTCGAAGCTCTGCATCAGATCG
CCCAG GTATACATAACCGAACCGTTAATACAGAGGTATAGCCTTGTGTGC
AAATGAACATACATTAAAGGGTTAGGGTTGTTAGGGTTAGCCCTAACCCC
ACACACAAACCAACCAACTTCCCGGTTTCGAGATGCGGCCAGCTGAGCCA
GTGGCGTACCTGGTGTGCCTTGCCTCTCGCGCGCGACCATTTCTCGTTGA
TTTCTTCGCCTTGTGTGGCCTGCCTCTGGGCCCGCGCCGAGCCTCGACGA
AGACGCACCGAGGAGCATCTACTGCTGAGCATTGTACATACATACATCCC
TCTTTGGCGGAATACTATCCACAAACAATCTCTACAAAAAATATAAATAT
CCCTATTTATTGATTTATTGTGTAACTCTCATATTCTCCCTCCGCGCACG
TGTCTCCAACACCCCACCTCGTTCCGGCGCGCGTCGGCGGCGTCGCTTGC
AACTGAACGGCAGCTCCCGTTCAGCGCGGCGGAGCTGTGGAGCCTCCACC
AGTTCTACTTCAGCCCTCCGGAGGCTCACCCCCGCCCGTCGCCGTCGCCC
GCCTCGGCGGCTTCTACCCCGTCGCCTTCCGCCGCCAACGCTACCGGCGG
GTCTTGGACGGCTGCGGCCGCCGCTGGCACCGCAGCG GC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig529:15763..16951+
>mRNA_L-elsbetiae_contig529.13428.1 ID=mRNA_L-elsbetiae_contig529.13428.1|Name=mRNA_L-elsbetiae_contig529.13428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig529:15763..16951+ (Laminarionema elsbetiae ELsaHSoW15) GCGGCGGCGGCGGTGGCGGAAGAGGAAAAGGAGCAAGGGGGCAACATTAG CAACCGCAACGGCGGTAGGATTGGCGATAGGATAGGTGGCGGGGCGGGCA AGGACTTGTCGGGCGTGGCAGCCAGCAACGGGATTCCGGTTCAACAGATG CAGCAGCGGAGGCAGCAGCAGCAACAGACTGGAGGAAGAGGAGGAGGGGG GGGGGCTCCTATCGCCGTGACCAAAGACGCGCCCCCAACCCAGCACCACC AGCACATGCGGCCGAATACGAGCCCCCAAGCTGCGCCGGTCGCCGGGATA GGTTTGAGGGAGGTGGCACAAAGCGCACCAGTTGGCAGCGGTGGCGGCAG CGACGGCTCGGCGAGTGAACGGAAGGTTCACGGCCGCGGGCACGCGGCGT CGGAGCACGTGCCTGCCGCAAATCCCGAGGGAGACGGTCGAGTAGTGGGT CGACGCCGAAGCGGTAGTGGCGGCGCCGGCACCGGGGCTGGTCGGGAGGC GGCGACGGAAGCGATGCGAGGGCCGCTGGTCGAAGCTCTGCATCAGATCG CCCAGGCGGCGGCGGCGGTGGCGGAAGAGGAAAAGGAGCAAGGGGGCAAC ATTAGCAACCGCAACGGCGGTAGGATTGGCGATAGGATAGGTGGCGGGGC GGGCAAGGACTTGTCGGGCGTGGCAGCCAGCAACGGGATTCCGGTTCAAC AGATGCAGCAGCGGAGGCAGCAGCAGCAACAGACTGGAGGAAGAGGAGGA GGGGGGGGGGCTCCTATCGCCGTGACCAAAGACGCGCCCCCAACCCAGCA CCACCAGCACATGCGGCCGAATACGAGCCCCCAAGCTGCGCCGGTCGCCG GGATAGGTTTGAGGGAGGTGGCACAAAGCGCACCAGTTGGCAGCGGTGGC GGCAGCGACGGCTCGGCGAGTGAACGGAAGGTTCACGGCCGCGGGCACGC GGCGTCGGAGCACGTGCCTGCCGCAAATCCCGAGGGAGACGGTCGAGTAG TGGGTCGACGCCGAAGCGGTAGTGGCGGCGCCGGCACCGGGGCTGGTCGG GAGGCGGCGACGGAAGCGATGCGAGGGCCGCTGGTCGAAGCTCTGCATCA GATCGCCCAGCTCCCGTTCAGCGCGGCGGAGCTGTGGAGCCTCCACCAGT TCTACTTCAGCCCTCCGGAGGCTCACCCCCGCCCGTCGCCGTCGCCCGCC TCGGCGGCTTCTACCCCGTCGCCTTCCGCCGCCAACGCTACCGGCGGGTC TTGGACGGCTGCGGCCGCCGCTGGCACCGCAGCGCTCCCGTTCAGCGCGG CGGAGCTGTGGAGCCTCCACCAGTTCTACTTCAGCCCTCCGGAGGCTCAC CCCCGCCCGTCGCCGTCGCCCGCCTCGGCGGCTTCTACCCCGTCGCCTTC CGCCGCCAACGCTACCGGCGGGTCTTGGACGGCTGCGGCCGCCGCTGGCA CCGCAGCG back to top