mRNA_L-elsbetiae_contig529.13428.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig529.13428.1
Unique NamemRNA_L-elsbetiae_contig529.13428.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig529.13428.1 vs. uniprot
Match: A0A6H5KVK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.250e-10
Identity = 40/56 (71.43%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:  466 SGGAGTGAGREAATEAMRGPLVEALHQIAQLPFSAAELWSLHQFYFSPP-EAHPRP 630
            SGG GT     A  EA+R  LVEALHQIAQLPFSAAELWSLHQ YFSPP + HP P
Sbjct:  799 SGGDGTERAAAAVPEALRASLVEALHQIAQLPFSAAELWSLHQHYFSPPLDHHPSP 854
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BLAST of mRNA_L-elsbetiae_contig529.13428.1 vs. uniprot
Match: D7FK51_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK51_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.340e-9
Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:  499 AATEAMRGPLVEALHQIAQLPFSAAELWSLHQFYFSPP-EAHPRP 630
            A  EA+R  LVEALHQIAQLPFSAAELWSLHQ YFSPP + HP P
Sbjct:  662 AVPEALRASLVEALHQIAQLPFSAAELWSLHQHYFSPPLDHHPSP 706
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig529.13428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVK7_9PHAE1.250e-1071.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK51_ECTSI1.340e-977.78Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig529contigL-elsbetiae_contig529:15763..16951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue4.7e-09
Seed eggNOG ortholog2880.D7FK51
KEGG koko:K20523,ko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size733
Cds size729
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.2973156-CDS-L-elsbetiae_contig529:15762..163171622816546.2973156-CDS-L-elsbetiae_contig529:15762..16317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig529 15763..16317 +
1691683637.7526546-CDS-L-elsbetiae_contig529:15762..163171691683637.7526546-CDS-L-elsbetiae_contig529:15762..16317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig529 15763..16317 +
1622816546.309068-CDS-L-elsbetiae_contig529:16775..169491622816546.309068-CDS-L-elsbetiae_contig529:16775..16949Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig529 16776..16949 +
1691683637.7642908-CDS-L-elsbetiae_contig529:16775..169491691683637.7642908-CDS-L-elsbetiae_contig529:16775..16949Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig529 16776..16949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig529.13428.1prot_L-elsbetiae_contig529.13428.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig529 15763..16949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig529.13428.1

>prot_L-elsbetiae_contig529.13428.1 ID=prot_L-elsbetiae_contig529.13428.1|Name=mRNA_L-elsbetiae_contig529.13428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
AAAAVAEEEKEQGGNISNRNGGRIGDRIGGGAGKDLSGVAASNGIPVQQM
QQRRQQQQQTGGRGGGGGAPIAVTKDAPPTQHHQHMRPNTSPQAAPVAGI
GLREVAQSAPVGSGGGSDGSASERKVHGRGHAASEHVPAANPEGDGRVVG
RRRSGSGGAGTGAGREAATEAMRGPLVEALHQIAQLPFSAAELWSLHQFY
FSPPEAHPRPSPSPASAASTPSPSAANATGGSWTAAAAAGTAA
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mRNA from alignment at L-elsbetiae_contig529:15763..16951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig529.13428.1 ID=mRNA_L-elsbetiae_contig529.13428.1|Name=mRNA_L-elsbetiae_contig529.13428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1189bp|location=Sequence derived from alignment at L-elsbetiae_contig529:15763..16951+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGCGGCGGTGGCGGAAGAGGAAAAGGAGCAAGGGGGCAACATTAG
CAACCGCAACGGCGGTAGGATTGGCGATAGGATAGGTGGCGGGGCGGGCA
AGGACTTGTCGGGCGTGGCAGCCAGCAACGGGATTCCGGTTCAACAGATG
CAGCAGCGGAGGCAGCAGCAGCAACAGACTGGAGGAAGAGGAGGAGGGGG
GGGGGCTCCTATCGCCGTGACCAAAGACGCGCCCCCAACCCAGCACCACC
AGCACATGCGGCCGAATACGAGCCCCCAAGCTGCGCCGGTCGCCGGGATA
GGTTTGAGGGAGGTGGCACAAAGCGCACCAGTTGGCAGCGGTGGCGGCAG
CGACGGCTCGGCGAGTGAACGGAAGGTTCACGGCCGCGGGCACGCGGCGT
CGGAGCACGTGCCTGCCGCAAATCCCGAGGGAGACGGTCGAGTAGTGGGT
CGACGCCGAAGCGGTAGTGGCGGCGCCGGCACCGGGGCTGGTCGGGAGGC
GGCGACGGAAGCGATGCGAGGGCCGCTGGTCGAAGCTCTGCATCAGATCG
CCCAGGTATACATAACCGAACCGTTAATACAGAGGTATAGCCTTGTGTGC
AAATGAACATACATTAAAGGGTTAGGGTTGTTAGGGTTAGCCCTAACCCC
ACACACAAACCAACCAACTTCCCGGTTTCGAGATGCGGCCAGCTGAGCCA
GTGGCGTACCTGGTGTGCCTTGCCTCTCGCGCGCGACCATTTCTCGTTGA
TTTCTTCGCCTTGTGTGGCCTGCCTCTGGGCCCGCGCCGAGCCTCGACGA
AGACGCACCGAGGAGCATCTACTGCTGAGCATTGTACATACATACATCCC
TCTTTGGCGGAATACTATCCACAAACAATCTCTACAAAAAATATAAATAT
CCCTATTTATTGATTTATTGTGTAACTCTCATATTCTCCCTCCGCGCACG
TGTCTCCAACACCCCACCTCGTTCCGGCGCGCGTCGGCGGCGTCGCTTGC
AACTGAACGGCAGCTCCCGTTCAGCGCGGCGGAGCTGTGGAGCCTCCACC
AGTTCTACTTCAGCCCTCCGGAGGCTCACCCCCGCCCGTCGCCGTCGCCC
GCCTCGGCGGCTTCTACCCCGTCGCCTTCCGCCGCCAACGCTACCGGCGG
GTCTTGGACGGCTGCGGCCGCCGCTGGCACCGCAGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig529:15763..16951+

>mRNA_L-elsbetiae_contig529.13428.1 ID=mRNA_L-elsbetiae_contig529.13428.1|Name=mRNA_L-elsbetiae_contig529.13428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig529:15763..16951+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGCGGCGGTGGCGGAAGAGGAAAAGGAGCAAGGGGGCAACATTAG
CAACCGCAACGGCGGTAGGATTGGCGATAGGATAGGTGGCGGGGCGGGCA
AGGACTTGTCGGGCGTGGCAGCCAGCAACGGGATTCCGGTTCAACAGATG
CAGCAGCGGAGGCAGCAGCAGCAACAGACTGGAGGAAGAGGAGGAGGGGG
GGGGGCTCCTATCGCCGTGACCAAAGACGCGCCCCCAACCCAGCACCACC
AGCACATGCGGCCGAATACGAGCCCCCAAGCTGCGCCGGTCGCCGGGATA
GGTTTGAGGGAGGTGGCACAAAGCGCACCAGTTGGCAGCGGTGGCGGCAG
CGACGGCTCGGCGAGTGAACGGAAGGTTCACGGCCGCGGGCACGCGGCGT
CGGAGCACGTGCCTGCCGCAAATCCCGAGGGAGACGGTCGAGTAGTGGGT
CGACGCCGAAGCGGTAGTGGCGGCGCCGGCACCGGGGCTGGTCGGGAGGC
GGCGACGGAAGCGATGCGAGGGCCGCTGGTCGAAGCTCTGCATCAGATCG
CCCAGGCGGCGGCGGCGGTGGCGGAAGAGGAAAAGGAGCAAGGGGGCAAC
ATTAGCAACCGCAACGGCGGTAGGATTGGCGATAGGATAGGTGGCGGGGC
GGGCAAGGACTTGTCGGGCGTGGCAGCCAGCAACGGGATTCCGGTTCAAC
AGATGCAGCAGCGGAGGCAGCAGCAGCAACAGACTGGAGGAAGAGGAGGA
GGGGGGGGGGCTCCTATCGCCGTGACCAAAGACGCGCCCCCAACCCAGCA
CCACCAGCACATGCGGCCGAATACGAGCCCCCAAGCTGCGCCGGTCGCCG
GGATAGGTTTGAGGGAGGTGGCACAAAGCGCACCAGTTGGCAGCGGTGGC
GGCAGCGACGGCTCGGCGAGTGAACGGAAGGTTCACGGCCGCGGGCACGC
GGCGTCGGAGCACGTGCCTGCCGCAAATCCCGAGGGAGACGGTCGAGTAG
TGGGTCGACGCCGAAGCGGTAGTGGCGGCGCCGGCACCGGGGCTGGTCGG
GAGGCGGCGACGGAAGCGATGCGAGGGCCGCTGGTCGAAGCTCTGCATCA
GATCGCCCAGCTCCCGTTCAGCGCGGCGGAGCTGTGGAGCCTCCACCAGT
TCTACTTCAGCCCTCCGGAGGCTCACCCCCGCCCGTCGCCGTCGCCCGCC
TCGGCGGCTTCTACCCCGTCGCCTTCCGCCGCCAACGCTACCGGCGGGTC
TTGGACGGCTGCGGCCGCCGCTGGCACCGCAGCGCTCCCGTTCAGCGCGG
CGGAGCTGTGGAGCCTCCACCAGTTCTACTTCAGCCCTCCGGAGGCTCAC
CCCCGCCCGTCGCCGTCGCCCGCCTCGGCGGCTTCTACCCCGTCGCCTTC
CGCCGCCAACGCTACCGGCGGGTCTTGGACGGCTGCGGCCGCCGCTGGCA
CCGCAGCG
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