mRNA_L-elsbetiae_contig5289.13426.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5289.13426.1
Unique NamemRNA_L-elsbetiae_contig5289.13426.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5289.13426.1 vs. uniprot
Match: D7FSQ9_ECTSI (DOT1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ9_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.850e-17
Identity = 75/105 (71.43%), Postives = 83/105 (79.05%), Query Frame = 3 
Query:  219 LPRSPAPAMRGSGGDTPLSPPPRTPESRRSNAIVQSPS--GGMVDRRQLFKGQGXXXXXXXXXXXXXXXXXXXKSAARRPRSQSKTPAKRGTPQDVKVMRQGGAG 527
            +PRSP+PA +      P+SPPPRTPES  S A+V+SPS  GGMVDRRQLF G GXXXXXXXXXXXXXXXXXXX    R   +QSKTPAKRGTP+DVKVMRQGG G
Sbjct:   34 VPRSPSPAKQRKSAVIPMSPPPRTPESVSSTAVVESPSAGGGMVDRRQLFGGAGXXXXXXXXXXXXXXXXXXXXXGRR---AQSKTPAKRGTPKDVKVMRQGGDG 135
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5289.13426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSQ9_ECTSI1.850e-1771.43DOT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5289contigL-elsbetiae_contig5289:3006..5292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue5.8e-16
Seed eggNOG ortholog2880.D7FSQ9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histone methylation protein DOT1
EggNOG OGs2AVA3@1,2RZVU@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-03_002870.1
Exons3
Model size539
Cds size366
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5289.13426.1prot_L-elsbetiae_contig5289.13426.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5289 3374..5292 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.229038-UTR-L-elsbetiae_contig5289:3005..31491622816546.229038-UTR-L-elsbetiae_contig5289:3005..3149Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5289 3006..3149 +
1691683637.7017574-UTR-L-elsbetiae_contig5289:3005..31491691683637.7017574-UTR-L-elsbetiae_contig5289:3005..3149Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5289 3006..3149 +
1622816546.240966-UTR-L-elsbetiae_contig5289:3344..33731622816546.240966-UTR-L-elsbetiae_contig5289:3344..3373Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5289 3345..3373 +
1691683637.7185133-UTR-L-elsbetiae_contig5289:3344..33731691683637.7185133-UTR-L-elsbetiae_contig5289:3344..3373Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5289 3345..3373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.254984-CDS-L-elsbetiae_contig5289:3373..35661622816546.254984-CDS-L-elsbetiae_contig5289:3373..3566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5289 3374..3566 +
1691683637.7293053-CDS-L-elsbetiae_contig5289:3373..35661691683637.7293053-CDS-L-elsbetiae_contig5289:3373..3566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5289 3374..3566 +
1622816546.2671945-CDS-L-elsbetiae_contig5289:5119..52921622816546.2671945-CDS-L-elsbetiae_contig5289:5119..5292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5289 5120..5292 +
1691683637.7409122-CDS-L-elsbetiae_contig5289:5119..52921691683637.7409122-CDS-L-elsbetiae_contig5289:5119..5292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5289 5120..5292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5289.13426.1

>prot_L-elsbetiae_contig5289.13426.1 ID=prot_L-elsbetiae_contig5289.13426.1|Name=mRNA_L-elsbetiae_contig5289.13426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MAREEKTAVDVTDPALPRSPAPAMRGSGGDTPLSPPPRTPESRRSNAIVQ
SPSGGMVDRRQLFKGQGGGSSSSSNASTMPPPPTTPKSAARRPRSQSKTP
AKRGTPQDVKVMRQGGAGSSSS
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mRNA from alignment at L-elsbetiae_contig5289:3006..5292+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5289.13426.1 ID=mRNA_L-elsbetiae_contig5289.13426.1|Name=mRNA_L-elsbetiae_contig5289.13426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2287bp|location=Sequence derived from alignment at L-elsbetiae_contig5289:3006..5292+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCACACCCCCACGAGAGACGAGAGAGAGAGAGAGAGAAAGACATCGGA
AGAGAAAGGGGTTTCGTGCGTTGGTGACAAGCAACGTATCCATCCCACGA
AGCACAGAGAGCAGGCGATCAGGGGAACTTACGGGCGAGCATTGGTACGT
GAACAAGTGTGTCTATCCTTGTCTCTCTCTCTCTTACTCTCTCCCGCCAA
AAAATCGTAGCACAGTAGTCACGCCCGCCGCGCCATACCACTAACACGTA
GGATATCATCACCAGGCCCAGCTGTGACATGACCCTCTGTGATCCTCAGC
CCGAGTCTCCGCTCTTCCGTTTTCTGCTCTCTCCAGCAGTCCAGCGCAAG
AGAAAGGGAGAGGTGAAAATGGCGCGAGAGGAAAAAACTGCCGTTGATGT
CACAGACCCGGCTCTACCGCGCAGTCCAGCACCGGCCATGAGAGGGAGTG
GCGGCGATACCCCGCTTTCGCCACCGCCGCGCACCCCCGAGAGCAGGAGA
AGCAATGCCATCGTTCAGTCCCCTTCCGGAGGGATGGTCGATCGGCGCCA
ACTCTTCAAAGGTGAGTTTTCATCGCACATGTGGGACGTATTCGATTGCT
CTGGGTTGTGTGTCTCGTTTGTTCCGTTTGGGACCCGGAACCTGCCATAG
GTTGTGATGGTTCGCAAAGGGCGTTTATGCCGTACAACAGATGATTCATC
CTTTGTTTCAATCGTGTTGTATGGCAACCTGTTGCTGCCGTCTCTCTAAA
CCCGAGGATCCGGGCATATGTATGTAGTGCTCACCGAACAAAGAGAACCA
GCGGTCAACGTCGTCTGTAGCAGCAGGGGTACATTCAGCAGGTACACTCA
GCAGAACTAGCCAACGTACGGGCCGAACACAGAAGTATCATGCTACGGAG
GTTGTGTGTCGCCCCTTCTCTTCTGTCGGAAGATGTGTGGTGCGTGGATC
ATTCACCTCGCTATCCAGAGCAAAGTGATTAGACTACTTTTTTATCTCAA
GTGCGCGAGCGCAGCAGTCCCCCCCCCCTCTGTCCAGATCACGTGGACTA
CTACAACACATAACAATCTCGACACACCTCTTACAACCCGGCTGGTTTTG
TCACACTTGAGAAGCTTGACACCCACGCAATCAACCAGGGAAAGTTCTGG
TCACACTCTCCCGCACTCCATCAGCGATCTCTCGCCGTGTCTATTCTCAT
TGCGGGGGAGGGCGGTACATAGCCACGGAACATTTCGCGCCAAAACCAAC
GGCGTGTAGTACATACATTTGTATGGATCCCTTTTCTGTACCGCCATAAA
ACCATGTGTGCACAACTAATGTGCATGTGTACGAACAACAATAAAGCACC
GCTCGAGTATTTGAGCATTAGCTTGCCTTTGGATGGTGTGGGTATCTGCA
GGCGCAGGCTCCAAAAAAATAGTACTCCATTTAGAAGTACTTTATTTTTA
GTGGTACCTGGTATGTAGGTTGCACCGCCCCGCGTCTTAGTCAACGTGTA
GAGAGGCATGCACAGAGGGGTGCGGCAGGGAGAGACTGCAGTACTTGTTT
TGCTTGTGTGCCAAGCTCTGTGCCGATCTTCGTTGGGAAAACCGCACCAC
ATTAGGCTCGGACCGTTGTCGTTTTTTGTAGATCCCGAGGTCAAATGTCC
ATGTAGATACAACATTGTTTTCGACTATTTTAATGGCGTTTTTTGCGTGT
TTTTTCGTGTTTCGGCTTGCCGTGTCTTACATACATGTGTATCAGCTGTG
TCACTTGGCTGTGTGCATGGTTTGTCTATGGGCTTATCAATCAGCTTTTA
TTTAAATTGCACAGCTACATGTGTATTGCTAAAAATATCTGAACTACTCG
ACCAAGCCCCTGTCGACCAAGCCCCTGTTTTGGACCTTTTTTCTCGACAC
GCCACCCCTGCTTTTTAGTACAACATACTTACATATGTGCGTATATCATA
CGTAGGTACTAACGTACCAACTCACAATGAGGTTCACCTCTAAGTAGGCG
GTGGTTTTCACCCAACCAATTCACGCGACAAAAACAGCTCCTTCTTCGCT
CGATTCGATTAGACCATCTTGTACGGCGTGCATGCATGCACATGACGCAC
AATAAACGACCCAGGGCAAGGAGGCGGCAGCAGCAGCAGCAGCAACGCGA
GCACGATGCCACCGCCGCCGACGACACCCAAGTCCGCCGCCCGTCGGCCG
AGGTCTCAGTCTAAGACCCCCGCCAAGCGCGGGACGCCCCAGGACGTCAA
GGTCATGCGCCAGGGGGGGGCCGGGAGCAGCAGCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5289:3006..5292+

>mRNA_L-elsbetiae_contig5289.13426.1 ID=mRNA_L-elsbetiae_contig5289.13426.1|Name=mRNA_L-elsbetiae_contig5289.13426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig5289:3006..5292+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCGAGAGGAAAAAACTGCCGTTGATGTCACAGACCCGGCTCTACC
GCGCAGTCCAGCACCGGCCATGAGAGGGAGTGGCGGCGATACCCCGCTTT
CGCCACCGCCGCGCACCCCCGAGAGCAGGAGAAGCAATGCCATCGTTCAG
TCCCCTTCCGGAGGGATGGTCGATCGGCGCCAACTCTTCAAAGATGGCGC
GAGAGGAAAAAACTGCCGTTGATGTCACAGACCCGGCTCTACCGCGCAGT
CCAGCACCGGCCATGAGAGGGAGTGGCGGCGATACCCCGCTTTCGCCACC
GCCGCGCACCCCCGAGAGCAGGAGAAGCAATGCCATCGTTCAGTCCCCTT
CCGGAGGGATGGTCGATCGGCGCCAACTCTTCAAAGGGCAAGGAGGCGGC
AGCAGCAGCAGCAGCAACGCGAGCACGATGCCACCGCCGCCGACGACACC
CAAGTCCGCCGCCCGTCGGCCGAGGTCTCAGTCTAAGACCCCCGCCAAGC
GCGGGACGCCCCAGGACGTCAAGGTCATGCGCCAGGGGGGGGCCGGGAGC
AGCAGCAGCGGCAAGGAGGCGGCAGCAGCAGCAGCAGCAACGCGAGCACG
ATGCCACCGCCGCCGACGACACCCAAGTCCGCCGCCCGTCGGCCGAGGTC
TCAGTCTAAGACCCCCGCCAAGCGCGGGACGCCCCAGGACGTCAAGGTCA
TGCGCCAGGGGGGGGCCGGGAGCAGCAGCAGC
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