mRNA_L-elsbetiae_contig5233.13344.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5233.13344.1
Unique NamemRNA_L-elsbetiae_contig5233.13344.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5233.13344.1 vs. uniprot
Match: D7FQH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQH8_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 8.410e-22
Identity = 67/84 (79.76%), Postives = 72/84 (85.71%), Query Frame = 1 
Query:    1 GYHKGRNDLASLAAVEGRIAADDTGGLIGKXXXXXXXXXXXXXXXXXXXLRIGRDAKDTDVLKRFSSKLEDALGKNDETRRDRG 252
            GY +GR++LASLAA EGRI+ADDTGGL+GK XXXXXXXXXXX       LRIGRDA DTDVLKRFSSKLEDALGKNDETRR RG
Sbjct:  249 GYQQGRDELASLAAGEGRISADDTGGLLGKVXXXXXXXXXXXR------LRIGRDANDTDVLKRFSSKLEDALGKNDETRRHRG 326
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5233.13344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQH8_ECTSI8.410e-2279.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5233contigL-elsbetiae_contig5233:3596..5112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue1.1e-18
Seed eggNOG ortholog2880.D7FQH8
Preferred nameCWF19L2
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0071014,GO:0071704,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.Protein similar to CwfJ C-terminus 2
EggNOG OGsKOG2477@1,KOG2477@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size316
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816537.934583-CDS-L-elsbetiae_contig5233:3596..38211622816537.934583-CDS-L-elsbetiae_contig5233:3596..3821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5233 3597..3821 -
1691683631.639402-CDS-L-elsbetiae_contig5233:3596..38211691683631.639402-CDS-L-elsbetiae_contig5233:3596..3821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5233 3597..3821 -
1622816537.944435-CDS-L-elsbetiae_contig5233:5022..51121622816537.944435-CDS-L-elsbetiae_contig5233:5022..5112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5233 5023..5112 -
1691683631.655094-CDS-L-elsbetiae_contig5233:5022..51121691683631.655094-CDS-L-elsbetiae_contig5233:5022..5112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5233 5023..5112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5233.13344.1prot_L-elsbetiae_contig5233.13344.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5233 3597..5112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5233.13344.1

>prot_L-elsbetiae_contig5233.13344.1 ID=prot_L-elsbetiae_contig5233.13344.1|Name=mRNA_L-elsbetiae_contig5233.13344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
GYHKGRNDLASLAAVEGRIAADDTGGLIGKVGKDGGGGGGGSRGGRGGRL
RIGRDAKDTDVLKRFSSKLEDALGKNDETRRDRGGGGGRDGRDGRDRERD
SYRGA
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mRNA from alignment at L-elsbetiae_contig5233:3596..5112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5233.13344.1 ID=mRNA_L-elsbetiae_contig5233.13344.1|Name=mRNA_L-elsbetiae_contig5233.13344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1517bp|location=Sequence derived from alignment at L-elsbetiae_contig5233:3596..5112- (Laminarionema elsbetiae ELsaHSoW15)
GGCTACCACAAGGGGCGGAACGACCTGGCGTCGCTCGCCGCCGTCGAAGG
CAGGATAGCCGCCGACGACACCGGCGGGCTAATCGGAAAGGTGGCCCGGC
ATTGACTGTCTTGTTGTTGTTGTTGCTGTTGTTATTGTTGTTAATGCTGT
TGCTGTTGCTGTTGCTGTTATTGGTGTTGTTGTTAATGTTGTTGTTGTTG
TTGTTGCTGTTGTTGTTGTTGTTATTGTTAATGTTGTTATTGTTGTTAGT
GCTGTTGTTGTTGTTGTTGTTGTTGACAACCGTTCCGATCTCTCTACCCG
GCACCTCCATGGGTCCGTACTCATCAGATACTGACGCGGTCGATTCCCGT
GGTCACAGGACAACTTACCCTAAAAAGGGTAGAAGTATACTGAAGAAACG
AAAAGCAAATAACTTGTCCGGGGTAGGTACGTACGTTTTCATGTATTTAT
TTAGGCCGAAAGGCTTCGATTTGATCGACACATGTGGCTGCACCCTTTCT
CTCACGATATGTATATAATCTTAGGCAAGCACCGCAGAAGGGGGATGTGG
GGGGCCCCGGGGAGAGGAACCGTTCTGTTTTTTTTTTTTTTTTTTTTTTT
TCTCCCTTTTTTTGCATTTTTTTCCCCTCCCCCCCCTGCCCCCCCCCCCC
CCCCCCACCTACNNNNNNNNNNGGGGGGGGCCCGGGGGAGAGGGTCCGTT
CTGTTTTTTTTTTTTTTTTTTTTTTCCGCCCATCATTGGCATATTTTTCG
CCTGCCCCACTGGCCCCCATCCTCCGCCACGACTAGCTAGACGACCCAAC
CGGTGTGACCACGGATCGGTAGTACTCTTGGCAAAAGGTGCTTCGTGGCA
AGGAGCCTCCCTTAAGTGCTGGCAATGTATGCATGTAGAAGTGAAAATAA
AATATAAAAAATATAATAAAAATAAAAATAAAAATAAAAATAAAAATAAA
AATAAAAATAAATTGTGTCACTGCTGGTGAGCGGGCGGAGGGAGGGTTGG
TTGGTTGCACCGCGCGTGGCATGCCGTCTGATCATGTACTACATATTTAT
GTACATAAGTGTACGTCGGTCGTCAGTTCTATGATGGGCTGGTCGTCGCT
TCTGCATGGGTTGTTCGTTGCCCCCCGGTGGTGGTGCTAGTGCAGTGATT
GTAGTGCCGTGTTGGTAGCGTTGCCATTCGACACACGCATAAATAGCTTC
GACGAGTGATGACCCCGTGCATCCCTTCGCTGACGCCAAGAGAACGCTTC
CGCCGACCCCCCCCTCCCCCCGTCGATTGCCGCTATCATAGGTTGGAAAA
GACGGCGGCGGTGGCGGCGGCGGCAGCAGAGGCGGCCGGGGCGGTCGGCT
GAGGATCGGCCGCGACGCCAAGGATACAGACGTTCTCAAACGCTTCTCGA
GCAAGCTGGAGGACGCGCTCGGCAAGAACGACGAGACCCGCAGAGACCGC
GGCGGCGGCGGCGGCAGGGACGGCAGGGACGGCAGGGACAGAGAACGGGA
TAGCTACCGCGGCGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5233:3596..5112-

>mRNA_L-elsbetiae_contig5233.13344.1 ID=mRNA_L-elsbetiae_contig5233.13344.1|Name=mRNA_L-elsbetiae_contig5233.13344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig5233:3596..5112- (Laminarionema elsbetiae ELsaHSoW15)
GGCTACCACAAGGGGCGGAACGACCTGGCGTCGCTCGCCGCCGTCGAAGG
CAGGATAGCCGCCGACGACACCGGCGGGCTAATCGGAAAGGGCTACCACA
AGGGGCGGAACGACCTGGCGTCGCTCGCCGCCGTCGAAGGCAGGATAGCC
GCCGACGACACCGGCGGGCTAATCGGAAAGGTTGGAAAAGACGGCGGCGG
TGGCGGCGGCGGCAGCAGAGGCGGCCGGGGCGGTCGGCTGAGGATCGGCC
GCGACGCCAAGGATACAGACGTTCTCAAACGCTTCTCGAGCAAGCTGGAG
GACGCGCTCGGCAAGAACGACGAGACCCGCAGAGACCGCGGCGGCGGCGG
CGGCAGGGACGGCAGGGACGGCAGGGACAGAGAACGGGATAGCTACCGCG
GCGCAGTTGGAAAAGACGGCGGCGGTGGCGGCGGCGGCAGCAGAGGCGGC
CGGGGCGGTCGGCTGAGGATCGGCCGCGACGCCAAGGATACAGACGTTCT
CAAACGCTTCTCGAGCAAGCTGGAGGACGCGCTCGGCAAGAACGACGAGA
CCCGCAGAGACCGCGGCGGCGGCGGCGGCAGGGACGGCAGGGACGGCAGG
GACAGAGAACGGGATAGCTACCGCGGCGCA
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